NO01G02780, NO01G02780 (gene) Nannochloropsis oceanica

Overview
NameNO01G02780
Unique NameNO01G02780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3366
Alignment locationchr1:722152..725517 +

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Properties
Property NameValue
DescriptionHistone RNA hairpin-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:722152..725517 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003729mRNA binding
GO:0003723RNA binding
GO:0003729mRNA binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR026502SLBP1/SLBP2
IPR029344SLBP_RNA_bind
Homology
[Close]
BLAST of NO01G02780 vs. NCBI_GenBank
Match: XP_024395648.1 (uncharacterized protein LOC112291903 [Physcomitrella patens] >PNR40434.1 hypothetical protein PHYPA_017836 [Physcomitrella patens])

HSP 1 Score: 99.0 bits (245), Expect = 3.100e-17
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 0 
Query:   58 ALTVAVLGEETDPHRLRQRQKQVDYGKNTLGYDRYTQLVPKERRRRADPKTPDIHARISTKRFNGLVRAWRRRLHEFDP 137
            +++  V   E DPHRL QRQKQ+DYGKNTLGY+RY +LVP+ +R +A P+TPDI    S + ++G +R WRR LHE+DP
Sbjct:  418 SISAPVKQVELDPHRLCQRQKQIDYGKNTLGYERYIELVPRYQRTKAHPRTPDIRQVCSKRSWDGQIRKWRRLLHEYDP 496
[Close]
BLAST of NO01G02780 vs. NCBI_GenBank
Match: PTY25900.1 (hypothetical protein OFAS_OFAS015790 [Oncopeltus fasciatus])

HSP 1 Score: 99.0 bits (245), Expect = 3.100e-17
Identity = 48/94 (51.06%), Postives = 65/94 (69.15%), Query Frame = 0 
Query:   66 EETDPHRLRQRQKQVDYGKNTLGYDRYTQLVPKERRRRADPKTPDIHARISTKRFNGLVRAWRRRLHEFDPKETMIGTSHF--SFSSSPSSSND 158
            +ETDP  L +RQKQ+DYGKNT+GYDRY QLVPKE R +  PKTP +H + S + ++G+++AWR+RLH +DP     G      S  +S +SS D
Sbjct:  275 QETDPEVLARRQKQIDYGKNTIGYDRYRQLVPKEARSKMHPKTPPLHVKFSRRAWDGMIKAWRQRLHFWDPPSEGGGNPQCLESDETSETSSTD 368
[Close]
BLAST of NO01G02780 vs. NCBI_GenBank
Match: XP_014261051.1 (histone RNA hairpin-binding protein [Cimex lectularius])

HSP 1 Score: 98.6 bits (244), Expect = 4.000e-17
Identity = 58/139 (41.73%), Postives = 79/139 (56.83%), Query Frame = 0 
Query:   29 PSCLVGATPEINSSVLQARGNRHA--AGGTGALTVAVLGEETDPHRLRQRQKQVDYGKNTLGYDRYTQLVPKERRRRADPKTPDIHARISTKRFNGLVRAWRRRLHEFDPKETMIGTSH----FSFSSSPSSSNDLPQS 162
            PS +  +TP   SS  + +G +     GGT          ETDP  + +RQKQ+DYGKNT+GYDRYTQLVP++ R +  PKTP IH + S + ++GLV+ WR+RLH +DP     G         FS   S+   LP +
Sbjct:  177 PSKIPRSTP---SSTKRDKGRKRLRDLGGTPNSDKKKREAETDPEVIARRQKQIDYGKNTIGYDRYTQLVPRDARTKIHPKTPPIHLKFSRRAWDGLVKVWRQRLHFWDPPSEGGGNPDCLEISDFSDYSSTEGSLPST 312
[Close]
BLAST of NO01G02780 vs. NCBI_GenBank
Match: XP_024215919.1 (uncharacterized protein LOC106680224 isoform X2 [Halyomorpha halys])

HSP 1 Score: 98.6 bits (244), Expect = 4.000e-17
Identity = 41/70 (58.57%), Postives = 56/70 (80.00%), Query Frame = 0 
Query:   67 ETDPHRLRQRQKQVDYGKNTLGYDRYTQLVPKERRRRADPKTPDIHARISTKRFNGLVRAWRRRLHEFDP 137
            ETDP  L +RQKQ+DYGKNT+GYDRY QLVPKE R++  P+TP +H + S + ++GL++ WR+RLH +DP
Sbjct:  233 ETDPEVLARRQKQIDYGKNTIGYDRYRQLVPKEARKKMHPRTPPLHLKFSRRAWDGLIKVWRQRLHFWDP 302
[Close]
BLAST of NO01G02780 vs. NCBI_GenBank
Match: OUS42181.1 (histone mRNA stem-loop binding protein [Ostreococcus tauri])

HSP 1 Score: 98.2 bits (243), Expect = 5.200e-17
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 0 
Query:   67 ETDPHRLRQRQKQVDYGKNTLGYDRYTQLVPKERRRRADPKTPDIHARISTKRFNGLVRAWRRRLHEFDP 137
            ETD H+L+QRQ+Q+DYGKNTLGY RY +LV K  R+     TPDIHA +S + F+G+VR WRR LHE+DP
Sbjct:   45 ETDSHKLKQRQRQIDYGKNTLGYARYVELVKKSERKSCHAWTPDIHAALSKRAFDGVVRKWRRLLHEYDP 114
[Close]
BLAST of NO01G02780 vs. NCBI_GenBank
Match: XP_003075176.2 (Histone RNA stem-loop-binding protein SLBP1/SLBP2 [Ostreococcus tauri] >CEG01108.1 Histone RNA stem-loop-binding protein SLBP1/SLBP2 [Ostreococcus tauri])

HSP 1 Score: 98.2 bits (243), Expect = 5.200e-17
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 0 
Query:   67 ETDPHRLRQRQKQVDYGKNTLGYDRYTQLVPKERRRRADPKTPDIHARISTKRFNGLVRAWRRRLHEFDP 137
            ETD H+L+QRQ+Q+DYGKNTLGY RY +LV K  R+     TPDIHA +S + F+G+VR WRR LHE+DP
Sbjct:  121 ETDSHKLKQRQRQIDYGKNTLGYARYVELVKKSERKSCHAWTPDIHAALSKRAFDGVVRKWRRLLHEYDP 190
[Close]
BLAST of NO01G02780 vs. NCBI_GenBank
Match: XP_016607336.1 (hypothetical protein SPPG_05550 [Spizellomyces punctatus DAOM BR117] >KNC99296.1 hypothetical protein SPPG_05550 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 98.2 bits (243), Expect = 5.200e-17
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 0 
Query:   50 RHAAGGTGALTVAVLGEETDPHRLRQRQKQVDYGKNTLGYDRYTQLVPKERRRRADPKTPDIHARISTKRFNGLVRAWRRRLHEFDPKETM-IGTSHFSFS 150
            +H  GG  +L        ++  RL QRQKQ+DYGKNT+GY RY  +VPK +R+R DP+TP  HA+ S + ++GL+R WRR+LHE+DP E    G S   FS
Sbjct:  211 QHRLGGQASLRQQA-SMNSEERRLEQRQKQIDYGKNTVGYKRYIAMVPKHKRKRGDPETPKKHAKCSKRCWDGLIRHWRRKLHEWDPPEMKEQGLSDLEFS 310
[Close]
BLAST of NO01G02780 vs. NCBI_GenBank
Match: XP_009533726.1 (hypothetical protein PHYSODRAFT_519141 [Phytophthora sojae] >EGZ10981.1 hypothetical protein PHYSODRAFT_519141 [Phytophthora sojae])

HSP 1 Score: 97.8 bits (242), Expect = 6.800e-17
Identity = 50/94 (53.19%), Postives = 64/94 (68.09%), Query Frame = 0 
Query:   48 GNRHAAGGTGALTVAVLGE--ETDPHRLRQRQKQVDYGKNTLGYDRYTQLVPK-ERRRRADPKTPDIHARISTKRFNGLVRAWRRRLHEFDPKE 139
            G+ +A+ G    TV  L +  ETDPHRL QRQKQ+DYGKNT+GYDRY   VP+ +RR    P TPD   R+  K F+G+VR WR+ LH++DP E
Sbjct:   31 GSGNASTGAIGATVRTLADEKETDPHRLAQRQKQIDYGKNTIGYDRYCAQVPRLQRRPGKHPMTPDKTKRMGKKVFDGIVRKWRQALHKYDPPE 124
[Close]
BLAST of NO01G02780 vs. NCBI_GenBank
Match: XP_014275250.1 (uncharacterized protein LOC106680224 isoform X1 [Halyomorpha halys])

HSP 1 Score: 97.4 bits (241), Expect = 8.900e-17
Identity = 47/96 (48.96%), Postives = 65/96 (67.71%), Query Frame = 0 
Query:   67 ETDPHRLRQRQKQVDYGKNTLGYDRYTQLVPKERRRRADPKTPDIHARISTKRFNGLVRAWRRRLHEFDPKE-------TMIGTSHFSFSSSPSSS 156
            ETDP  L +RQKQ+DYGKNT+GYDRY QLVPKE R++  P+TP +H + S + ++GL++ WR+RLH +DP          + G+S  S +SS   S
Sbjct:  233 ETDPEVLARRQKQIDYGKNTIGYDRYRQLVPKEARKKMHPRTPPLHLKFSRRAWDGLIKVWRQRLHFWDPPSEGGGNPACLEGSSDISDTSSTEGS 328
[Close]
BLAST of NO01G02780 vs. NCBI_GenBank
Match: XP_024386815.1 (uncharacterized protein LOC112287720 isoform X1 [Physcomitrella patens] >XP_024386816.1 uncharacterized protein LOC112287720 isoform X1 [Physcomitrella patens] >XP_024386817.1 uncharacterized protein LOC112287720 isoform X1 [Physcomitrella patens] >PNR46160.1 hypothetical protein PHYPA_013279 [Physcomitrella patens])

HSP 1 Score: 96.7 bits (239), Expect = 1.500e-16
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 0 
Query:   67 ETDPHRLRQRQKQVDYGKNTLGYDRYTQLVPKERRRRADPKTPDIHARISTKRFNGLVRAWRRRLHEFDP 137
            E DPHRL QRQKQ+DYGKNTLGY+RY ++VP+ +R ++ P+TPDI    S + ++G +R WRR LHE+DP
Sbjct:  427 EMDPHRLCQRQKQIDYGKNTLGYERYIEMVPRYKRTKSHPRTPDIRQVCSKRSWDGQIRKWRRLLHEYDP 496
The following BLAST results are available for this feature:
BLAST of NO01G02780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_024395648.13.100e-1755.70uncharacterized protein LOC112291903 [Physcomitrel... [more]
PTY25900.13.100e-1751.06hypothetical protein OFAS_OFAS015790 [Oncopeltus f... [more]
XP_014261051.14.000e-1741.73histone RNA hairpin-binding protein [Cimex lectula... [more]
XP_024215919.14.000e-1758.57uncharacterized protein LOC106680224 isoform X2 [H... [more]
OUS42181.15.200e-1761.43histone mRNA stem-loop binding protein [Ostreococc... [more]
XP_003075176.25.200e-1761.43Histone RNA stem-loop-binding protein SLBP1/SLBP2 ... [more]
XP_016607336.15.200e-1748.51hypothetical protein SPPG_05550 [Spizellomyces pun... [more]
XP_009533726.16.800e-1753.19hypothetical protein PHYSODRAFT_519141 [Phytophtho... [more]
XP_014275250.18.900e-1748.96uncharacterized protein LOC106680224 isoform X1 [H... [more]
XP_024386815.11.500e-1658.57uncharacterized protein LOC112287720 isoform X1 [P... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008050NSK008050Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02780.1NO01G02780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|537332gene_271Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100007g112gene1419Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02780.1NO01G02780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02780 ID=NO01G02780|Name=NO01G02780|organism=Nannochloropsis oceanica|type=gene|length=3366bp
ACAGGATAAAAAGACAAGGCATCCACCTATAGCCCCAGCCAAAGCCAACG
TCAGCCTCCACCCCATGGACACGGAACTCCCGGCGgtaagtccccgcctt
ttttttaccctctccacctgctacctccctcctcaccttcttccctccct
tccgtccccccgtcccaaaagCGCTTGGCAAGCAAGCGCGTGCGTGCCGA
AGTCGAGGAGGGCCAAGCGCCCAAGCCCCGCCTACCCAGTTGCCTTGTTG
GCGCCACCCCTGAGATAAATAGCAGTGTCCTCCAAGCCCGCGGCAATAGG
CATGCGGCAGGAGGGACGGGAGCGCTGACCGTGGCGGTGCTGGGGGAAGA
AACGGACCCGCACCGACTCCGGCAGCGCCAAAAGCAGGTGGACTACGGCA
AAAATACGTTGGGCTATGACCGGTACACGCAGCTGGTGCCAAAGGAACGT
CGGCGTCGCGCCGACCCAAAGACACCCGACATCCACGCTCGTATCAGCAC
CAAGCGGTTTAATGGCCTGGTCCGGGCCTGGCGCCGGCGACTCCATGAAT
TCGACCCAAAAGAAACCATGATTGGTACTTCCCACTTCTCATTCTCCTCT
TCTCCCTCTAGTAGCAATGATCTTCCACAATCTGGCGGCCCTTCCTACGC
TGCGGTGGTCAAGACGCCCGGGTCATCCTCCCGCCCTCACAGTCACAGCC
ACGACACTCCCAACCGTGGTGATAGCGGTGGCGGCATGCATGTGGCGGAA
GTCCACGACGACGACAGCAGCGATGGGCTTGACGGACAGGAGATTATCAT
TACACAGGAGGGCGGACCGGGCAGTACCGGTGGCAAGGGCCGCGACAAAA
AGAAGTCCCGGATGAGTCCCTTTGATCGGCCGGACGCAGGCTCGGCGACA
GAGGAGGAGGTGGCTGGTGGTTGTGTGGGGAGCGACTTTCCTGCACTTGT
GTCCGGCGCAGCTGTAGCTAGTGACGGAGATCAGGTAGCAAGGAGATGGG
ATGATGGGGAGGAGGGAGGGGAGGCTGACTTTTACAAGATCAAACGCTCT
ATGGCCATGGGCGCTGGACTAGGTGGCGATTACAACAGTGGCAGCTTCAA
GAATGCTGAATATTGGGGTGACGCCCAGCGGTTGGGAGATGATGAGGAGC
TGTGCTACAGTGACGATGACCTTCTCTAAGCTGCAGGAGGAAAGGGAGGT
AAGGAGGGATGGAGGGAAGATTTTTTTTTCAATTCCAGTTGTTCTGGTCA
TTGATTGACGAGCAAGCGTCCGTACGTGTGGACTGTACCGAGCGAACAGG
AGAGAAGGACGGAAAGGCAAAGGCATTTTGACGGGCCATAGGAGGAAGGG
AAACGAATATCAAGGGCTGAAAAATTCGTGAAGCTGCGACAACTACAGCA
AGGAGAAAGAACTGCCAAACCTCTTCCTTTCTCTTCTACCGCCACCGCGT
CGTGTTGAACAATTTGATATAACGTGGTAAGGGACAGAAAGTACTCTTGT
GTGTGGAGAGGTGGAAGAGAGAAAGAAAAAACTAAGAAACTAAGTATATA
CAATTCTCGTTGTGAGAGACGTCACGAACCGCTTAGGGCAAGGAGTATGG
CATGTGAGAAGATGAAACGCAAGCAAAATGGAGAAAAGAAGAGAAAATTG
AACATGAAAAATAAGGGAGTGCAACCACTGAACAACACATGCTATTCCCC
ACCCCTGACTTTTTTACTCACAAAACATGTTTCAGGCCTAAGCTGACCCG
CAAGTTGTCGGTTTCCAGCAGATTGCCAAAATCGAAAAAAAAAACAATCC
CTGCCCGCACGTCGTAACATTTCATCTTTCGGTTGAACACATCCGTCGCT
GTACATGTCTACCTTTCTGCCTTTTATCTTTATTTCTATGCCTCCTCCTC
TTCCTGCGCTACTTCTTTCTCGCCACTTCGGTGGTCCGTTGCTCCTCTAA
AAAGGCAACTAACAACATCTCGGCCGCCGATCGTGGCGTCAAGGTACCAT
CCGCCAGCTCCTCCTCCATCCTTACCGCCTTCCGTTCCACCGCCCCCGAC
CCCCTCACCTTCCTCACGAGCAAATCTTCCAAACTACTCCACATCCAATG
CCTTCCTTGATCTCTCCTCTTCAACCTCAAAAACCCTGTCTTGTCCAACA
CGTCACTGCACCGACTAACCTCCTCCCAGACCTTCGCAATCTTCTCCCTT
CTTAAAGCTGAACACATTGTCACAGTCGGCGTCCACGGCTCCCATTTCCG
TCGCTGAAAACACAAGGCATGTTTATACTCAGCAGCTGTGTGCTGCGCAG
CTGTGAGTAAGTGGCCATCAGCCTTATTGACCACCACCACGTCGGCCACC
TCCATAATGCCCTTTTTAACGCCCTGCAGCTCATCCCCCCTCCGGGCGGC
ACCAGCAGCAACAGCATATCCGAGGTCTGGTCGATCATGATCTCCGATTG
TCCCAGCCCCACCGTCTCGATGAATACAACATCAAAAGCAGCCGCCTGGC
ATAGCAGCACGACGTCATTCGTATAGCGTGCCACCCCCCCAAGCACCCCA
CTGGTCGGGCAGGCACGTACGAATGCCCGAGGGTCCTTAGACAGCTCGTA
CATCCGTGTCTTGTCCCCCAAGATTGAACCACCGCTGCGAGACGAAGAGG
GATCGACCGCGATGACGGCTACGCGCTGTGCGTGGTCATAGGGGTAGAAG
AAATGAGAGAAGTGAGGCGAATGTGGTACATTTTACTCTCCTCTACTGCA
TCCAGATTTATTGTCTTTCCCCCTCATCCGTAGACGCACCAGTCCCTTGC
TATCCAGCAAATACATGCCCAGGGACTCAATAAAAGTGGACTTGCCGGCA
CCTGGGGGGCCGGCGATGCCAATCCGCAGGGGGCGAGTGCCCTTTCGGAG
GCTGCCGCTGGTGCTGCCGCTGCTGCTGCTGCTGCTTCTGCTGTCGCTGC
TAGATGCCATAGCAGTATTCGAATTCGGCCGCCGATATGTTTTGACCTTT
CGACTGCGCTCGCGGACGACGTGGTCCAATAATGCCTCAGCCTCTTGTCT
ATGGCTTTCCTTGGAGGACTCAATCAGCGTTATGGCCCGGCTCAACGAGA
GACGGTCGCCCTTGAGCACGCCTTCGGCCAGGCCAAGGACCCGCGGGCTT
ATGGCAGAGGTGGAAAATGTACAGGCTGGACTGATGATCCAACCTCGCAT
CGACAAGGATAGTCGCTTGATGGGAGTACTTGCGGCAGTAGCAGCAGCAG
CGCAGCATAGCTGCCGCCGCATGATTAGGTCGATGACAATGTAGGGAGTT
GACAAATCCCACACCTAAAGTTTCGGCGGCGCCAATTTTCCTGTCGAAAA
GTTGAATTTGATTTAA
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protein sequence of NO01G02780.1

>NO01G02780.1-protein ID=NO01G02780.1-protein|Name=NO01G02780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MDTELPARLASKRVRAEVEEGQAPKPRLPSCLVGATPEINSSVLQARGNR
HAAGGTGALTVAVLGEETDPHRLRQRQKQVDYGKNTLGYDRYTQLVPKER
RRRADPKTPDIHARISTKRFNGLVRAWRRRLHEFDPKETMIGTSHFSFSS
SPSSSNDLPQSGGPSYAAVVKTPGSSSRPHSHSHDTPNRGDSGGGMHVAE
VHDDDSSDGLDGQEIIITQEGGPGSTGGKGRDKKKSRMSPFDRPDAGSAT
EEEVAGGCVGSDFPALVSGAAVASDGDQVARRWDDGEEGGEADFYKIKRS
MAMGAGLGGDYNSGSFKNAEYWGDAQRLGDDEELCYSDDDLL*
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Synonyms
Publications