NO01G02770, NO01G02770 (gene) Nannochloropsis oceanica

Overview
NameNO01G02770
Unique NameNO01G02770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2046
Alignment locationchr1:719906..721951 -

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Properties
Property NameValue
DescriptionSec14 cytosolic factor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:719906..721951 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036865CRAL-TRIO_dom_sf
IPR001251CRAL-TRIO_dom
Homology
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BLAST of NO01G02770 vs. NCBI_GenBank
Match: GAX11648.1 (hypothetical protein FisN_7Lh007 [Fistulifera solaris])

HSP 1 Score: 65.9 bits (159), Expect = 2.700e-7
Identity = 50/195 (25.64%), Postives = 84/195 (43.08%), Query Frame = 0 
Query:  101 RFLVANEGHLAHAKEQLTKDIAWREDIKLYELQGRTREEIVGVDDAFFLEQYPCIFLGYEDEANNYAPVVYRSLTHLQTKALAAKGVTVEKMVKHELWQYETDCKLLFSHPESFPARQLKVIIDINGMTWGQCTKDLVSILSGFSSFSKLHHPERLQKLFIIGAPKPFLFIWNTIISHIIPVSTKNKITILHTFE 296
            RFL A +G++     +    + WR+++ +  +  R          A   + Y   F        N  P  Y        KAL   GV+VE +++H     E   +++    E   + +   IID++G+ +G    D++  +   S+F   H+PER   ++II  P  F  IW+ +   + PV T  KI IL   E
Sbjct:  184 RFLRAGKGNVEEGWRRYRATLQWRKEMGIDTILRRPNPRF-----ALIKQHYLHYF---HMRGKNNEPCFYEIPAKTNLKALREGGVSVEDLLQHYAMIVEYQWQIV----ERSDSAKSLYIIDLHGIRFGDFMGDVMDFVKRASAFCNQHYPERAGTVYIINVPSWFKMIWSVVKPWVDPV-TLEKIHILRGAE 365
[Close]
BLAST of NO01G02770 vs. NCBI_GenBank
Match: XP_008610759.1 (hypothetical protein SDRG_06737 [Saprolegnia diclina VS20] >EQC35997.1 hypothetical protein SDRG_06737 [Saprolegnia diclina VS20])

HSP 1 Score: 65.1 bits (157), Expect = 4.700e-7
Identity = 54/194 (27.84%), Postives = 86/194 (44.33%), Query Frame = 0 
Query:  101 RFLVANEGHLAHAKEQLTKDIAWRE----DIKLYELQGRTREEIVGVDDAFFLEQYPCIFLGYEDEANNYAPVVYRSLTHLQTKALAAKGVTVEKMVKHELWQYETDCKLLFSHPESFPARQLKVIIDINGMTWGQCTKDLVSILSGFSSFSKLHHPERLQKLFIIGAPKPFLFIWNTIISHIIPVSTKNKITI 291
            RFL A +G  A  + +    + WR     D  LYE+Q                + YP  F G     N    V Y  L  +  K L + G++++++++H  + Y T+   L   P S   R + V +D  G+ +   T +++  +    +F   H+PER  ++FI+  P  F  IW  I   + PV TK KI I
Sbjct:  477 RFLAAEKGDEAKGRARYEATLQWRRENHVDGILYEVQPHFH---------LIKQCYPQYFHGRSKNGN---CVYYEKLGKIDLKRLKSAGLSLDQLLRH--YMYITEYLWLILEP-SDTGRTISV-LDAEGVGFYDLTGEVMEFVRRAMAFVSAHYPERSAQIFIVNVPTWFNVIWKGISPLVDPV-TKEKIRI 653
The following BLAST results are available for this feature:
BLAST of NO01G02770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 12
Match NameE-valueIdentityDescription
GAX11648.12.700e-725.64hypothetical protein FisN_7Lh007 [Fistulifera sola... [more]
XP_008610759.14.700e-727.84hypothetical protein SDRG_06737 [Saprolegnia dicli... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008051NSK008051Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02770.1NO01G02770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576772gene_270Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100007g111gene1420Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02770.1NO01G02770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02770 ID=NO01G02770|Name=NO01G02770|organism=Nannochloropsis oceanica|type=gene|length=2046bp
AACAGGGTCAGGATTAAGATGGAAGGTAGAGAAGCAGGAAGAAGCTCCCA
GCTTGAGTCAACAACGGCGCCACCATCCCAAAGAGAAAAAAAGCAACAGC
TGGACCAGGTGCAGCCTGCAACGACGCAGACGCATGAGACCCCTGACCCC
ACGCTGGCCATAGGGAACTCGCCCCGCTTTTTGGGTGACCGACAGCCCCT
TCCCGACGAGCTCCAGCTCCTAGAAGATTTTCAGCTCCTGCTTGACGAGG
GCCAAGTTGCGTTGCCGCGCAGgtacgtacgtgttaggactttttgtgtc
aatccctgctgtgatcttgcttacttctgatggagttccttgtggggaat
ctcttctcagcacacgtgcacttaccacgatttgggcgtggtgcatctcc
gtctccttcatttcgacctcccttggtgtgcgtggcccatgccgatatct
agaaagtgcacttcgatgggagaacgctcaaaaatgtattgttttgttgt
tgttgaaaatatcaaatgcgccccattatgaattattggatttgaacgaa
gagggtgcatgttcgtggaagctccgcgatttcaaaaggtaacagcggag
accgatttagtcaccacaagagtacattggaaggtgggcacactcctcaa
tcttctcctcagcccacggtttcatttattctttcacgcataataacaca
cagCTTTTGGGAGGCCAATTACAATGAGTCGCGATGCAGTCTCTTTTGGC
GCTTCCTCGTCGCCAACGAAGGCCACCTTGCGCACGCAAAAGAGCAGCTG
ACCAAGGACATAGCCTGGAGGGAGGATATAAAGCTCTATGAGCTGCAGGG
CCGAACACGCGAAGAAATAGTTGGCGTGGATGATGCTTTTTTCTTGGAGC
AGTACCCGTGCATTTTCCTAGGCTACGAAGATGAAGCTAACAACTATGCT
CCTGTAGTGTATAGGAGTTTAACGCACTTGCAGACCAAGGCTTTGGCAGC
AAAGGGCGTGACAGTCGAGAAAATGGTCAAGCACGAGCTCTGGCAGTATG
AGACGGATTGCAAGCTCTTGTTCTCGCATCCCGAAAGCTTCCCAGCTCGG
CAACTTAAAGTTATCATTGACATTAATGGTATGACCTGGGGGCAATGCAC
CAAAGACTTGGTGAGCATCCTCTCTGGATTTTCATCTTTCAGCAAGCTCC
ATCACCCTGAACGCCTGCAGAAGCTCTTCATTATTGGTGCGCCCAAACCA
TTTCTCTTTATATGGAATACTATCATTTCACACATCATTCCGGTGAGTAC
CAAGAATAAGATCACGATTCTACACACATTTGAAGGGCATCTGTGGCTGG
AGGCATGGATGGCGAAGCTCCCGGCAGCCTTGGAGGACGCAAAAGCCAAG
GCAGCATCAGCACCGACGGGGCCAAAATAACTTGTGTGTGTGCGCAGAGA
AATATGATAAGGACATGAACATGTAAATATTGAAGTATTGAAGAAACCTC
TCTGTTGTGGGTCAACTTGTGAAGATCGCGGAGTCCATCCCACTAACTCG
GGACACGCTGTCTCTGGTGTCTTGGCTGCCTACCTTTTTTTTAACCATAC
AAAAGCACAATCAAATTCCAGGAAACTGATCACAATAGCTAGAGTAGAGG
TGGACTTGTCACTTTTATCGAGTCACATCTGGAATTGGTTGTTGCTGACC
AGTATGGGGTGAAAATCACCGTGAGATTTCTTGGCACGATGTTCCTCGTG
ATGCGGACGACGAGCTCTTGCCGCTTTATGTCAATGCTCATGTATCATAA
CCAATATCAAACGCAAACGAAAAATATGACACTACAGAAAAAGGCGTGCA
GTTACTTGCATGATACGTGTTAAGATGGAGAGCTTAGAACCTTTGCTGTA
CAGTTTAAAAAAAAAAACTTAAAAAAAAAACTTAAAACTTAAAATGACTG
ACAAAAACATGTTGAAAGCCGCTCATCGCAGCTCCCTTCTTCATGTGTCC
CCCAGAAATTCAGCGCAACCGAACAGTAGTAGATGATGAATCCCTG
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protein sequence of NO01G02770.1

>NO01G02770.1-protein ID=NO01G02770.1-protein|Name=NO01G02770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MEGREAGRSSQLESTTAPPSQREKKQQLDQVQPATTQTHETPDPTLAIGN
SPRFLGDRQPLPDELQLLEDFQLLLDEGQVALPRSFWEANYNESRCSLFW
RFLVANEGHLAHAKEQLTKDIAWREDIKLYELQGRTREEIVGVDDAFFLE
QYPCIFLGYEDEANNYAPVVYRSLTHLQTKALAAKGVTVEKMVKHELWQY
ETDCKLLFSHPESFPARQLKVIIDINGMTWGQCTKDLVSILSGFSSFSKL
HHPERLQKLFIIGAPKPFLFIWNTIISHIIPVSTKNKITILHTFEGHLWL
EAWMAKLPAALEDAKAKAASAPTGPK*
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Synonyms
Publications