NO01G02770.1, NO01G02770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02770.1
Unique NameNO01G02770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1615
Alignment locationchr1:719906..721951 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:719906..721951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02770.1 vs.
Match: EWM29171.1 (sec14 cytosolic factor [Nannochloropsis gaditana])

HSP 1 Score: 410.6 bits (1054), Expect = 4.500e-111
Identity = 188/288 (65.28%), Postives = 229/288 (79.51%), Query Frame = 0 
Query:   22 REKKQQLDQVQPATTQTHETPDPTLAIGNSPRFLGDRQPLPDELQLLEDFQLLLDEGQVALPRSFWEANYNESRCSLFWRFLVANEGHLAHAKEQLTKDIAWREDIKLYELQGRTREEIVGVDDAFFLEQYPCIFLGYEDEANNYAPVVYRSLTHLQTKALAAKGVTVEKMVKHELWQYETDCKLLFSHPESFPARQLKVIIDINGMTWGQCTKDLVSILSGFSSFSKLHHPERLQKLFIIGAPKPFLFIWNTIISHIIPVSTKNKITILHTFEGHLWLEAWMAKLPA 310
            RE+ QQ DQ            D T +I   P ++G RQPLP+ELQL+ +FQ +LD   V LPR+FWEANY+ESRCSLFWRFLVAN+GH+  AK QL +D+AWR++I+L +LQ   R+++VG++DAFF+  YPC+ LG+ED + NY+PVVYR LTHL TK LA KGVTVEKM+KHELWQYE DC+LLF HPESFP RQLKVIIDI+GMTW QCTKDL+SILSGFSSFSK+HHPERLQKL+IIGAPKPF F+WNTI+S IIP  T+NKI ILH+ +G+ WLE WM   P+
Sbjct:   18 RERGQQADQQSALV-------DATQSIDVVPSYVGGRQPLPEELQLMAEFQRVLDSANVILPRNFWEANYHESRCSLFWRFLVANDGHVIRAKNQLARDVAWRDEIRLKDLQNMARKDVVGIEDAFFIRHYPCLCLGFEDGSENYSPVVYRRLTHLNTKVLAEKGVTVEKMIKHELWQYEKDCRLLFEHPESFPPRQLKVIIDISGMTWAQCTKDLISILSGFSSFSKVHHPERLQKLYIIGAPKPFSFVWNTIVSRIIPERTRNKIMILHSIQGNTWLEKWMKMCPS 298
The following BLAST results are available for this feature:
BLAST of NO01G02770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29171.14.500e-11165.28sec14 cytosolic factor [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02770NO01G02770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02770.1NO01G02770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02770.1.cds1NO01G02770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02770.1.cds2NO01G02770.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02770.1 ID=NO01G02770.1|Name=NO01G02770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1615bp
AACAGGGTCAGGATTAAGATGGAAGGTAGAGAAGCAGGAAGAAGCTCCCA
GCTTGAGTCAACAACGGCGCCACCATCCCAAAGAGAAAAAAAGCAACAGC
TGGACCAGGTGCAGCCTGCAACGACGCAGACGCATGAGACCCCTGACCCC
ACGCTGGCCATAGGGAACTCGCCCCGCTTTTTGGGTGACCGACAGCCCCT
TCCCGACGAGCTCCAGCTCCTAGAAGATTTTCAGCTCCTGCTTGACGAGG
GCCAAGTTGCGTTGCCGCGCAGCTTTTGGGAGGCCAATTACAATGAGTCG
CGATGCAGTCTCTTTTGGCGCTTCCTCGTCGCCAACGAAGGCCACCTTGC
GCACGCAAAAGAGCAGCTGACCAAGGACATAGCCTGGAGGGAGGATATAA
AGCTCTATGAGCTGCAGGGCCGAACACGCGAAGAAATAGTTGGCGTGGAT
GATGCTTTTTTCTTGGAGCAGTACCCGTGCATTTTCCTAGGCTACGAAGA
TGAAGCTAACAACTATGCTCCTGTAGTGTATAGGAGTTTAACGCACTTGC
AGACCAAGGCTTTGGCAGCAAAGGGCGTGACAGTCGAGAAAATGGTCAAG
CACGAGCTCTGGCAGTATGAGACGGATTGCAAGCTCTTGTTCTCGCATCC
CGAAAGCTTCCCAGCTCGGCAACTTAAAGTTATCATTGACATTAATGGTA
TGACCTGGGGGCAATGCACCAAAGACTTGGTGAGCATCCTCTCTGGATTT
TCATCTTTCAGCAAGCTCCATCACCCTGAACGCCTGCAGAAGCTCTTCAT
TATTGGTGCGCCCAAACCATTTCTCTTTATATGGAATACTATCATTTCAC
ACATCATTCCGGTGAGTACCAAGAATAAGATCACGATTCTACACACATTT
GAAGGGCATCTGTGGCTGGAGGCATGGATGGCGAAGCTCCCGGCAGCCTT
GGAGGACGCAAAAGCCAAGGCAGCATCAGCACCGACGGGGCCAAAATAAC
TTGTGTGTGTGCGCAGAGAAATATGATAAGGACATGAACATGTAAATATT
GAAGTATTGAAGAAACCTCTCTGTTGTGGGTCAACTTGTGAAGATCGCGG
AGTCCATCCCACTAACTCGGGACACGCTGTCTCTGGTGTCTTGGCTGCCT
ACCTTTTTTTTAACCATACAAAAGCACAATCAAATTCCAGGAAACTGATC
ACAATAGCTAGAGTAGAGGTGGACTTGTCACTTTTATCGAGTCACATCTG
GAATTGGTTGTTGCTGACCAGTATGGGGTGAAAATCACCGTGAGATTTCT
TGGCACGATGTTCCTCGTGATGCGGACGACGAGCTCTTGCCGCTTTATGT
CAATGCTCATGTATCATAACCAATATCAAACGCAAACGAAAAATATGACA
CTACAGAAAAAGGCGTGCAGTTACTTGCATGATACGTGTTAAGATGGAGA
GCTTAGAACCTTTGCTGTACAGTTTAAAAAAAAAAACTTAAAAAAAAAAC
TTAAAACTTAAAATGACTGACAAAAACATGTTGAAAGCCGCTCATCGCAG
CTCCCTTCTTCATGTGTCCCCCAGAAATTCAGCGCAACCGAACAGTAGTA
GATGATGAATCCCTG
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protein sequence of NO01G02770.1

>NO01G02770.1-protein ID=NO01G02770.1-protein|Name=NO01G02770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MEGREAGRSSQLESTTAPPSQREKKQQLDQVQPATTQTHETPDPTLAIGN
SPRFLGDRQPLPDELQLLEDFQLLLDEGQVALPRSFWEANYNESRCSLFW
RFLVANEGHLAHAKEQLTKDIAWREDIKLYELQGRTREEIVGVDDAFFLE
QYPCIFLGYEDEANNYAPVVYRSLTHLQTKALAAKGVTVEKMVKHELWQY
ETDCKLLFSHPESFPARQLKVIIDINGMTWGQCTKDLVSILSGFSSFSKL
HHPERLQKLFIIGAPKPFLFIWNTIISHIIPVSTKNKITILHTFEGHLWL
EAWMAKLPAALEDAKAKAASAPTGPK*
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mRNA from alignment at chr1:719906..721951-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02770.1 ID=NO01G02770.1|Name=NO01G02770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2046bp|location=Sequence derived from alignment at chr1:719906..721951- (Nannochloropsis oceanica)
AACAGGGTCAGGATTAAGATGGAAGGTAGAGAAGCAGGAAGAAGCTCCCA
GCTTGAGTCAACAACGGCGCCACCATCCCAAAGAGAAAAAAAGCAACAGC
TGGACCAGGTGCAGCCTGCAACGACGCAGACGCATGAGACCCCTGACCCC
ACGCTGGCCATAGGGAACTCGCCCCGCTTTTTGGGTGACCGACAGCCCCT
TCCCGACGAGCTCCAGCTCCTAGAAGATTTTCAGCTCCTGCTTGACGAGG
GCCAAGTTGCGTTGCCGCGCAGGTACGTACGTGTTAGGACTTTTTGTGTC
AATCCCTGCTGTGATCTTGCTTACTTCTGATGGAGTTCCTTGTGGGGAAT
CTCTTCTCAGCACACGTGCACTTACCACGATTTGGGCGTGGTGCATCTCC
GTCTCCTTCATTTCGACCTCCCTTGGTGTGCGTGGCCCATGCCGATATCT
AGAAAGTGCACTTCGATGGGAGAACGCTCAAAAATGTATTGTTTTGTTGT
TGTTGAAAATATCAAATGCGCCCCATTATGAATTATTGGATTTGAACGAA
GAGGGTGCATGTTCGTGGAAGCTCCGCGATTTCAAAAGGTAACAGCGGAG
ACCGATTTAGTCACCACAAGAGTACATTGGAAGGTGGGCACACTCCTCAA
TCTTCTCCTCAGCCCACGGTTTCATTTATTCTTTCACGCATAATAACACA
CAGCTTTTGGGAGGCCAATTACAATGAGTCGCGATGCAGTCTCTTTTGGC
GCTTCCTCGTCGCCAACGAAGGCCACCTTGCGCACGCAAAAGAGCAGCTG
ACCAAGGACATAGCCTGGAGGGAGGATATAAAGCTCTATGAGCTGCAGGG
CCGAACACGCGAAGAAATAGTTGGCGTGGATGATGCTTTTTTCTTGGAGC
AGTACCCGTGCATTTTCCTAGGCTACGAAGATGAAGCTAACAACTATGCT
CCTGTAGTGTATAGGAGTTTAACGCACTTGCAGACCAAGGCTTTGGCAGC
AAAGGGCGTGACAGTCGAGAAAATGGTCAAGCACGAGCTCTGGCAGTATG
AGACGGATTGCAAGCTCTTGTTCTCGCATCCCGAAAGCTTCCCAGCTCGG
CAACTTAAAGTTATCATTGACATTAATGGTATGACCTGGGGGCAATGCAC
CAAAGACTTGGTGAGCATCCTCTCTGGATTTTCATCTTTCAGCAAGCTCC
ATCACCCTGAACGCCTGCAGAAGCTCTTCATTATTGGTGCGCCCAAACCA
TTTCTCTTTATATGGAATACTATCATTTCACACATCATTCCGGTGAGTAC
CAAGAATAAGATCACGATTCTACACACATTTGAAGGGCATCTGTGGCTGG
AGGCATGGATGGCGAAGCTCCCGGCAGCCTTGGAGGACGCAAAAGCCAAG
GCAGCATCAGCACCGACGGGGCCAAAATAACTTGTGTGTGTGCGCAGAGA
AATATGATAAGGACATGAACATGTAAATATTGAAGTATTGAAGAAACCTC
TCTGTTGTGGGTCAACTTGTGAAGATCGCGGAGTCCATCCCACTAACTCG
GGACACGCTGTCTCTGGTGTCTTGGCTGCCTACCTTTTTTTTAACCATAC
AAAAGCACAATCAAATTCCAGGAAACTGATCACAATAGCTAGAGTAGAGG
TGGACTTGTCACTTTTATCGAGTCACATCTGGAATTGGTTGTTGCTGACC
AGTATGGGGTGAAAATCACCGTGAGATTTCTTGGCACGATGTTCCTCGTG
ATGCGGACGACGAGCTCTTGCCGCTTTATGTCAATGCTCATGTATCATAA
CCAATATCAAACGCAAACGAAAAATATGACACTACAGAAAAAGGCGTGCA
GTTACTTGCATGATACGTGTTAAGATGGAGAGCTTAGAACCTTTGCTGTA
CAGTTTAAAAAAAAAAACTTAAAAAAAAAACTTAAAACTTAAAATGACTG
ACAAAAACATGTTGAAAGCCGCTCATCGCAGCTCCCTTCTTCATGTGTCC
CCCAGAAATTCAGCGCAACCGAACAGTAGTAGATGATGAATCCCTG
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Coding sequence (CDS) from alignment at chr1:719906..721951-

>NO01G02770.1 ID=NO01G02770.1|Name=NO01G02770.1|organism=Nannochloropsis oceanica|type=CDS|length=981bp|location=Sequence derived from alignment at chr1:719906..721951- (Nannochloropsis oceanica)
ATGGAAGGTAGAGAAGCAGGAAGAAGCTCCCAGCTTGAGTCAACAACGGC
GCCACCATCCCAAAGAGAAAAAAAGCAACAGCTGGACCAGGTGCAGCCTG
CAACGACGCAGACGCATGAGACCCCTGACCCCACGCTGGCCATAGGGAAC
TCGCCCCGCTTTTTGGGTGACCGACAGCCCCTTCCCGACGAGCTCCAGCT
CCTAGAAGATTTTCAGCTCCTGCTTGACGAGGGCCAAGTTGCGTTGCCGC
GCAGCTTTTGGGAGGCCAATTACAATGAGTCGCGATGCAGTCTCTTTTGG
CGCTTCCTCGTCGCCAACGAAGGCCACCTTGCGCACGCAAAAGAGCAGCT
GACCAAGGACATAGCCTGGAGGGAGGATATAAAGCTCTATGAGCTGCAGG
GCCGAACACGCGAAGAAATAGTTGGCGTGGATGATGCTTTTTTCTTGGAG
CAGTACCCGTGCATTTTCCTAGGCTACGAAGATGAAGCTAACAACTATGC
TCCTGTAGTGTATAGGAGTTTAACGCACTTGCAGACCAAGGCTTTGGCAG
CAAAGGGCGTGACAGTCGAGAAAATGGTCAAGCACGAGCTCTGGCAGTAT
GAGACGGATTGCAAGCTCTTGTTCTCGCATCCCGAAAGCTTCCCAGCTCG
GCAACTTAAAGTTATCATTGACATTAATGGTATGACCTGGGGGCAATGCA
CCAAAGACTTGGTGAGCATCCTCTCTGGATTTTCATCTTTCAGCAAGCTC
CATCACCCTGAACGCCTGCAGAAGCTCTTCATTATTGGTGCGCCCAAACC
ATTTCTCTTTATATGGAATACTATCATTTCACACATCATTCCGGTGAGTA
CCAAGAATAAGATCACGATTCTACACACATTTGAAGGGCATCTGTGGCTG
GAGGCATGGATGGCGAAGCTCCCGGCAGCCTTGGAGGACGCAAAAGCCAA
GGCAGCATCAGCACCGACGGGGCCAAAATAA
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Synonyms
Publications