NO01G02280, NO01G02280 (gene) Nannochloropsis oceanica

Overview
NameNO01G02280
Unique NameNO01G02280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1923
Alignment locationchr1:594696..596618 -

Link to JBrowse

Properties
Property NameValue
DescriptionRubisco expression protein
Mutants
The following records are associated with this feature:
TitleMethodAccession dateLast modified date
Rubisco activaseOverexpression2019-05-102019-05-10
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:594696..596618 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR003959ATPase_AAA_core
IPR000470CbxX_CfqX_mono
IPR000641CbxX_CfqX
Homology
BLAST of NO01G02280 vs. NCBI_GenBank
Match: XP_001712367.1 (cbbx [Hemiselmis andersenii] >ABW98042.1 cbbx [Hemiselmis andersenii])

HSP 1 Score: 360.9 bits (925), Expect = 5.300e-96
Identity = 191/353 (54.11%), Postives = 254/353 (71.95%), Query Frame = 0
Query:   62 NSGNYRKLSDAMIRAEKEAKRNEEXXXXXXMAEELARQARAKKVAKLNSVMSTPKQTVGSADEFSWDGGVQGALDKLETELIGLKPVKSRVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIFKAMGYCRSGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYYLYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPGMQSRVNLHIDFPDMEPDDLVEVGKLMFNNMEYKLSPDAEPALREYVTLRKDKLFFSNARSVRNAVDLARMSAANRVYEIATAPGATGVITLDDLTEIKKEDFDGLLDLVRNASD 415
            NS N  KL+DA+  A+ EA++  EXXXXXX                 N++    +   G+ +EF +  GV+  L+KL+T+L+GL PVKSRVRE+A++LVVDK+R+++GLD  +   LHMCFTGAPGTGKTTVA RMG I + MGY RSGH+V+ATRD LVGQYVGHT PKTKEVIK+AMGG+L IDEAYYLYNA NDRDYG ESIEILL VME+   D++++ AGYKDRMD+FFS+IPGM SRV  HI+FP+ EP++L+ + K+M  ++EY++S DAEP   EY+  R    +FSNAR+VRNAVD ARM AA R++  A    + G+++  +L  ++K DF  + +L+    +
Sbjct:   38 NSDN-SKLTDALKEADIEARKIREXXXXXXXXXXXXXXXXXXXXXXXNAIPEDAE--AGTVEEFMYKDGVKEILEKLDTDLVGLIPVKSRVREIAALLVVDKLRRNLGLDTSV-PSLHMCFTGAPGTGKTTVAMRMGQILQRMGYSRSGHLVVATRDDLVGQYVGHTAPKTKEVIKKAMGGVLLIDEAYYLYNASNDRDYGQESIEILLNVMEENREDIVIVLAGYKDRMDKFFSFIPGMSSRVGNHIEFPNYEPEELLSIAKVMCRDLEYEMSVDAEPIFFEYIKKRMTMPYFSNARTVRNAVDRARMRAAIRLFSKAFDQSSDGMVSKTELMTLEKNDFVSVEELIERGEN 386          
BLAST of NO01G02280 vs. NCBI_GenBank
Match: XP_002176682.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51145.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 359.8 bits (922), Expect = 1.200e-95
Identity = 190/346 (54.91%), Postives = 243/346 (70.23%), Query Frame = 0
Query:   68 KLSDAMIRAEKEAKRNEEXXXXXXMAEELARQARAKKVAKLNSVMSTPKQTVGSADEFSWDGGVQGALDKLETELIGLKPVKSRVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIFKAMGYCRSGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYYLYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPGMQSRVNLHIDFPDMEPDDLVEVGKLMFNNMEYKLSPDAEPALREYVTLRKDKLFFSNARSVRNAVDLARMSAANRVYEIATAPGAT-GVITLDDLTEIKKEDFDGLLDLVRNA 413
            +L D +   + E ++N  XXXXXX       + R KK+  +N++  +  Q  G+ +EF +  GVQ  LDKL+ EL+GL PVK RV+E+AS+LV+DKMR+ +G +  +   LHMCFTGAPGTGKTTVA RMG I   MGY R GHVVLATRD LVGQYVGHT PKTKE+IK+AMGG+L +DEAYYLYNA NDRDYG ESIEILL VME +  DL+V  AGYKDRMD+FFSYIPGM SR+  HIDFP+   D+LV++  +M   +EY +  +A P  + Y+  R    FFSNAR+VRNA+D ARM++A R +E     G   G+ T+ DL +I+ +DF  LLD + NA
Sbjct:  155 RLRDRLNEVDTERRKNXXXXXXXXXXXXXXXEERQKKIDYMNNMPDS--QPAGTVEEFMFKEGVQDQLDKLDRELVGLVPVKKRVKEIASLLVLDKMRRKLGFETAV-PSLHMCFTGAPGTGKTTVAVRMGQILAKMGYSRKGHVVLATRDDLVGQYVGHTAPKTKEMIKKAMGGVLLVDEAYYLYNAANDRDYGQESIEILLNVMENQQEDLVVALAGYKDRMDKFFSYIPGMMSRIGNHIDFPNYSADELVQIASVMARELEYDIDDNAYPVFKAYIEKRMTLPFFSNARTVRNAMDRARMNSAIRTFERFAINGENGGICTVSDLKKIQADDFQVLLDDINNA 497          
BLAST of NO01G02280 vs. NCBI_GenBank
Match: CBN77355.1 (cbbX protein [Ectocarpus siliculosus])

HSP 1 Score: 358.2 bits (918), Expect = 3.400e-95
Identity = 194/361 (53.74%), Postives = 250/361 (69.25%), Query Frame = 0
Query:   19 SGFQVPAPCAP----GRRLPVCMAEGEAPSKHG-GLTYNKEKAMAGDINSGNYRKLSDAMIRAEKEAKRNEEXXXXXXMAEELARQARAKKVAKLNSVMSTPKQT-VGSADEFSWDGGVQGALDKLETELIGLKPVKSRVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIFKAMGYCRSGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYYLYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPGMQSRVNLHIDFPDMEPDDLVEVGKLMFNNMEYKLSPDAEPALREYVTLRKDKLFFSNARSVRNAVDLARMSAA 374
            + FQ+P    P      R  + MA+    +  G  L YN EK    + N+GNYRKLS+A+  A+ EA+  EE       A E+ R+AR   +AK+  +   P  T VG+ +EF +  GV+  L+KL+++L+GL PVK RVR++A++LV+DKMR  +G D  +   LHMCFTGAPGTGKTTVA RMG I + MGYCR GHVV+ATRD LVGQYVGHT PKTKE+IK+A GGIL +DEAYYLYNA ND+DYG ESIEILL VME++  DLIV  AGYKDRMD+FFSYIPGM SR+  HIDFP+   D+LVE+  +M  +++Y +   A    +EY+  R    FFSNAR+VRNA+D ARM++A
Sbjct:   18 AAFQIPVFTRPATGASSRSALSMAQPTVGTGTGKSLEYNPEK-YGDEKNAGNYRKLSEALEAADVEARLAEEAADQRARAGEIRREAR---MAKIKFMEDMPDNTEVGTVEEFMFKEGVRDILEKLDSDLVGLIPVKLRVRQIAALLVLDKMRGKLGFDTSV-PSLHMCFTGAPGTGKTTVALRMGQILQRMGYCRQGHVVVATRDDLVGQYVGHTAPKTKEMIKKAFGGILLVDEAYYLYNAANDKDYGQESIEILLNVMEEQKDDLIVTLAGYKDRMDRFFSYIPGMSSRIGNHIDFPNYLVDELVEIAMVMARDLQYFMDDAALAVFKEYIETRMKFPFFSNARTVRNAMDRARMNSA 373          
BLAST of NO01G02280 vs. NCBI_GenBank
Match: GAX10130.1 (hypothetical protein FisN_3Lh322 [Fistulifera solaris])

HSP 1 Score: 356.7 bits (914), Expect = 1.000e-94
Identity = 184/349 (52.72%), Postives = 239/349 (68.48%), Query Frame = 0
Query:   68 KLSDAMIRAEKEAKRNEEXXXXXXMAEELARQARAKKVAKLNSVMSTPKQTVGSADEFSWDGGVQGALDKLETELIGLKPVKSRVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIFKAMGYCRSGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYYLYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPGMQSRVNLHIDFPDMEPDDLVEVGKLMFNNMEYKLSPDAEPALREYVTLRKDKLFFSNARSVRNAVDLARMSAANRVYEIATAPGAT-GVITLDDLTEIKKEDFDGLLDLVRNASDD 416
            +L + +  A+ E ++ EE       A E+ R+ R +K+A +  +     Q  G+ +EF +  GVQ  LDKL+ EL+GL PVK RV+E+A++LV+DKMR+ +G +  +   LHMCFTGAPGTGKTTVA RMG I   MGY R GHVVLATRD LVGQYVGHT PKTKE+IK+AMGG+L +DEAYYLYNA NDRDYG ESIEILL VME +  DL+V  AGYKDRMD+FFSYIPGM SR+  HIDFP+   ++LV++  +M   +EY +  +A     +Y+  R +  +FSNAR+VRNA+D ARM++A R ++     G   GV T+ DL  I  EDF  LLD +  A  D
Sbjct:   61 RLRERLNEADTERRKAEEEALQRERAAEIRREERMRKIAYMQQM--PDNQPAGTVEEFMFKEGVQDQLDKLDRELVGLLPVKKRVKEIAALLVLDKMRRKLGFETSV-PSLHMCFTGAPGTGKTTVAVRMGQILAKMGYSRQGHVVLATRDDLVGQYVGHTAPKTKEMIKKAMGGVLLVDEAYYLYNAANDRDYGQESIEILLNVMETQQDDLVVALAGYKDRMDKFFSYIPGMMSRIGNHIDFPNYSAEELVQIASVMAGQLEYDIDNNAYNTFYQYIQKRMELPYFSNARTVRNAMDRARMNSAIRTFDRFAIRGENGGVCTVQDLKSITSEDFQVLLDDILYADAD 406          
BLAST of NO01G02280 vs. NCBI_GenBank
Match: GAX16197.1 (hypothetical protein FisN_3Hh322 [Fistulifera solaris])

HSP 1 Score: 355.9 bits (912), Expect = 1.700e-94
Identity = 184/349 (52.72%), Postives = 238/349 (68.19%), Query Frame = 0
Query:   68 KLSDAMIRAEKEAKRNEEXXXXXXMAEELARQARAKKVAKLNSVMSTPKQTVGSADEFSWDGGVQGALDKLETELIGLKPVKSRVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIFKAMGYCRSGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYYLYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPGMQSRVNLHIDFPDMEPDDLVEVGKLMFNNMEYKLSPDAEPALREYVTLRKDKLFFSNARSVRNAVDLARMSAANRVYEIATAPGAT-GVITLDDLTEIKKEDFDGLLDLVRNASDD 416
            +L + +  A+ E ++ EE       A E+ R+ R +K+A +  +     Q  G+ +EF +  GVQ  LDKL+ EL+GL PVK RV+E+A++LV+DKMR+ +G +  +   LHMCFTGAPGTGKTTVA RMG I   MGY R GHVVLATRD LVGQYVGHT PKTKE+IK+AMGG+L +DEAYYLYNA NDRDYG ESIEILL VME +  DL+V  AGYKDRMD+FFSYIPGM SR+  HIDFP+   ++LV++  +M   +EY +  +A      Y+  R +  +FSNAR+VRNA+D ARM++A R ++     G   GV T+ DL  I  EDF  LLD +  A  D
Sbjct:   61 RLRERLNEADTERRKAEEEALQRERAAEIRREERMRKIAYMQQM--PDNQPAGTVEEFMFKEGVQDQLDKLDRELVGLLPVKKRVKEIAALLVLDKMRRKLGFETSV-PSLHMCFTGAPGTGKTTVAVRMGQILAKMGYSRQGHVVLATRDDLVGQYVGHTAPKTKEMIKKAMGGVLLVDEAYYLYNAANDRDYGQESIEILLNVMETQQDDLVVALAGYKDRMDKFFSYIPGMMSRIGNHIDFPNYSAEELVQIASVMAGQLEYDIDNNAYNTFYHYIQKRMELPYFSNARTVRNAMDRARMNSAIRTFDRFAIRGENGGVCTVQDLKSITSEDFQVLLDDILYADAD 406          
BLAST of NO01G02280 vs. NCBI_GenBank
Match: OEU18637.1 (P-loop containing nucleoside triphosphate hydrolase protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 353.2 bits (905), Expect = 1.100e-93
Identity = 173/300 (57.67%), Postives = 222/300 (74.00%), Query Frame = 0
Query:  115 PKQT-VGSADEFSWDGGVQGALDKLETELIGLKPVKSRVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIFKAMGYCRSGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYYLYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPGMQSRVNLHIDFPDMEPDDLVEVGKLMFNNMEYKLSPDAEPALREYVTLRKDKLFFSNARSVRNAVDLARMSAANRVYEIATAPGAT-GVITLDDLTEIKKEDFDGLLDLVRNA 413
            P +T  G+ +EF +  GVQ  LDKL+ EL+GL+PVK RV+E+A++LV+DKMR+ +G +  +   LHMCFTGAPGTGKTTVA RMG +   MGY R GHVVLATRD LVGQYVGHT PKTKE++K+AMGGIL +DEAYYLYNA NDRDYG ESIEILL VME +  DL+V  AGYKDRMD+FF+YIPGM SR+  H+DFP+ + D+LV++  +M + +EY +   A P  +EY+  R +  +FSNAR+VRNA+D ARM++A R +E     G   G+ T+ DL +I   DF  LLD + NA
Sbjct:    5 PDETPAGTVEEFMFKEGVQDQLDKLDQELVGLRPVKKRVKEIAALLVLDKMRRKLGFETAV-PSLHMCFTGAPGTGKTTVAVRMGQVLAKMGYSRQGHVVLATRDDLVGQYVGHTAPKTKEMVKKAMGGILLVDEAYYLYNAANDRDYGQESIEILLNVMENQQDDLVVALAGYKDRMDRFFTYIPGMMSRIGNHVDFPNYDADELVQIAAVMAHQLEYDIDDTAYPVFKEYIAKRMELPYFSNARTVRNAMDRARMNSAIRTFERFAINGENGGLCTVQDLKDITASDFQVLLDDIVNA 303          
BLAST of NO01G02280 vs. NCBI_GenBank
Match: EJK74161.1 (hypothetical protein THAOC_04179 [Thalassiosira oceanica])

HSP 1 Score: 348.6 bits (893), Expect = 2.700e-92
Identity = 200/406 (49.26%), Postives = 254/406 (62.56%), Query Frame = 0
Query:   13 SCLFLASGFQVPAPCAPGRRLPVCMAEGEAPSKHGGLTYNKEKAMAG--DINSGNYRKLSDAMIRAEKEAKRNEEXXXXXXMAEELARQARAKKVAKLNSVMSTPKQTVGSADEFSWDGGVQGALDKLETELIGLKPVKSRVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIFKAMGYCRSGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYYLYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPGMQSRVNLHIDFPDMEPDDLVEVGKLMFNNMEYKLSPDAEPALREYVTLRKDKLFFSNARSVRNAVDLARMSAANRVYEIATAPGAT-GVITLDDLTEIKKEDFDGLLDLVRNASDD 416
            S LFL S     AP A     P  +  G  PS  G      E    G  D ++G   +L D +  A+ E ++ +E  XXXX             +A +N +     Q  G+ DEF +  GVQ  LDKL+ +L+GL  VK RV+E+A++LV+DKMR+ +G +  +   LHM FTGAPGTGKTTVA RMG I   MGY R GHVVLATRD LVGQYVGHT PKTKE+IK+AMGG+L +DEAYYLYNA NDRDYG ESIEILL VME    DL+V  AGYKDRMD FFSYIPGM SR+  HIDFP+   D+LV++  +M  ++EY + P A    ++Y+  R +  +FSNAR+VRNA+D ARM++A R ++     G   G  T+ DL  I  EDF  LLD + N+  D
Sbjct:    8 SLLFLGSAAAF-APAARNSASPTALFNGADPSSFG----QGESLQFGGKDTSTGGAGRLRDKLNDADVERRKIQEEAXXXXXXXXXXXXXXXXXIAYMNEM--PDDQPAGTVDEFMFKEGVQDQLDKLDRDLVGLVAVKKRVKEIAALLVLDKMRRKLGFETSV-PSLHMSFTGAPGTGKTTVAVRMGQILAKMGYARRGHVVLATRDDLVGQYVGHTAPKTKEMIKKAMGGVLLVDEAYYLYNAANDRDYGQESIEILLNVMENNQDDLVVAVAGYKDRMDAFFSYIPGMMSRIGNHIDFPNYSADELVQISDVMSRDLEYDIEPAAYEVFKKYIEARMELPYFSNARTVRNAMDRARMNSAIRTFDRFAIEGENGGECTVADLKNIAPEDFQILLDDILNSDSD 405          
BLAST of NO01G02280 vs. NCBI_GenBank
Match: XP_005539202.1 (presumed transcriptional regulator for RuBisCO operon [Cyanidioschyzon merolae strain 10D] >BAM83166.1 presumed transcriptional regulator for RuBisCO operon [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 348.2 bits (892), Expect = 3.500e-92
Identity = 185/352 (52.56%), Postives = 243/352 (69.03%), Query Frame = 0
Query:   58 AGDINSGNYRKLSDAMIRAEKEAKRNEEXXXXXXMAEELARQARAKKVAKLNSVMSTPKQTVGSADEFSWDGGVQGALDKLETELIGLKPVKSRVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIFKAMGYCRSGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYYLYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPGMQSRVNLHIDFPDMEPDDLVEVGKLMFNNMEYKLSPDAEPALREYVTLRKDKLFFSNARSVRNAVDLARMSAANRVYEIATAPGATGVITLDDLTEIKKEDFDGLLDLV 410
            + D      R+LSDA+   + EA+   E  XXXX                L S+     +  G+ DEF    GV   L KL+ +L+GLKPVK RVRE+A++LVVDK+R  +GL    +  LHM FTG+PGTGKTTVA RMG I KAMGY RSGH+++ATRD LVGQYVGHT PKTKEVIK+A GG+LFIDEAYYLYNA NDRDYGVE+IEILL VME++  DL+VIFAGY+DRM++F+SYIPG+ SR+  HI FPD   ++LV++ K+M  +MEY+++ DA PA R Y+  R    +FSNAR+VRN ++ ARM +A R++  A  P A G+++ D+L  +  EDF  + +L+
Sbjct:   44 SSDYEQPTERRLSDALKERDVEARLAREEAXXXXXXXXXXXXXXXXXXXXLMSI--PDDKEAGTIDEFLQKEGVLDILQKLDHDLVGLKPVKDRVREIAALLVVDKLRSRLGLTG-TTPSLHMAFTGSPGTGKTTVAMRMGQILKAMGYSRSGHLIVATRDDLVGQYVGHTAPKTKEVIKRAFGGVLFIDEAYYLYNAANDRDYGVEAIEILLNVMEEQREDLVVIFAGYEDRMNKFYSYIPGISSRIGNHISFPDYTLEELVDIAKVMVRDMEYRIADDAIPACRAYIEKRMQMPYFSNARTVRNLINRARMRSAIRIFNKAMDPNADGLVSRDELMTLITEDFPTVQELL 392          
BLAST of NO01G02280 vs. NCBI_GenBank
Match: XP_005779815.1 (hypothetical protein EMIHUDRAFT_468866 [Emiliania huxleyi CCMP1516] >EOD27386.1 hypothetical protein EMIHUDRAFT_468866 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 347.8 bits (891), Expect = 4.600e-92
Identity = 204/401 (50.87%), Postives = 259/401 (64.59%), Query Frame = 0
Query:   23 VPAPCAPGRRLPVCMAEGEAPSKHGGLTYNKEKAMAGDINSGNYR--KLSDAMIRAEKEAKRNEEXXXXXXMAEELARQARAKKVAKLNSVMSTPKQTVGSADEFSWDGGVQGALDKLETELIGLKPVKSRVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIFKAMGYCRSGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYYLYNAGNDRDYG-------VESIEILLKVMEQRSSDLIVIFAGYKDRMDQF-----FSYIPGMQSRVNLHIDFPDMEPDDLVEVGKLMFNNMEYKLSPDAEPALREYVTLRKDKLFFSNARSVRNAVDLARMSAANRVYEIATAPGATGVITLDDLTEIKKEDF----DGL 406
            +PAP A   R  VCM  G      GG +        G  N  N++  KLSD +  A+ E +   E       A + AR+ RA+KVA L  +    K   G+ D+F +  GV+  L+KL+ +LIGL PVK RVRE+AS+LVVDKMR  +GL+  +   LHM FTGAPGTGKTTVA RMG I + MGYCR+GHVV+ATRD LVGQYVGHT PKTKE++K+AMGGIL +DEAYYLYNA NDRDYG        ESIEILL VME    DLIV+ AGYKD+MD+       S + GM SR+  HI+FPD E D+LVE+GK+     E      AEPAL++Y++ RK   FF+NAR+VRNA+DLARM +A RV+    +P + G+++ D+L  I  +DF    DGL
Sbjct:   21 LPAPAA--GRAAVCMQGGXXXXGIGG-SGGPGLQWGGVENDPNFKTAKLSDKLKEADIERRLESEAIAAREEAVQRAREERARKVALLTQIPDDVK--AGTVDDFMYKEGVKDILEKLDYDLIGLTPVKQRVREIASLLVVDKMRLKLGLETSV-PSLHMGFTGAPGTGKTTVALRMGQILQRMGYCRTGHVVVATRDDLVGQYVGHTAPKTKEMVKKAMGGILLVDEAYYLYNAANDRDYGQESVECRQESIEILLNVMENNKEDLIVVLAGYKDKMDKLPPARACSALAGMASRIGNHIEFPDYEDDELVEIGKVSPGAAE-----SAEPALKDYLSKRKRMPFFANARTVRNAIDLARMGSAIRVFNEKMSPSSNGMVSEDELMTIMPDDFPAPEDGL 410          
BLAST of NO01G02280 vs. NCBI_GenBank
Match: XP_002289188.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED92725.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 347.4 bits (890), Expect = 6.100e-92
Identity = 191/357 (53.50%), Postives = 238/357 (66.67%), Query Frame = 0
Query:   60 DINSGNYRKLSDAMIRAEKEAKRNEEXXXXXXMAEELARQARAKKVAKLNSVMSTPKQTVGSADEFSWDGGVQGALDKLETELIGLKPVKSRVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIFKAMGYCRSGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYYLYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPGMQSRVNLHIDFPDMEPDDLVEVGKLMFNNMEYKLSPDAEPALREYVTLRKDKLFFSNARSVRNAVDLARMSAANRVYEIATAPGAT-GVITLDDLTEIKKEDFDGLLDLVRNASDD 416
            D N+ NY KLS+ +  A+ E +    XXXXXX                   +     Q  G+ DEF +  GVQ  LDKL+ +L+GL  VK RV+E+A++LV+DKMR+ +G +  +   LHM FTGAPGTGKTTVA RMG I   MGY R GHVVLATRD LVGQYVGHT PKTKE+IK+AMGG+L +DEAYYLYNA NDRDYG ESIEILL VME    DL+V  AGYKDRMD+FFSYIPGM SR+  HIDFP+   D+LV++  +M  ++EY ++P+A    + Y+  R +  FFSNAR+VRNA+D ARM++A R +E     G   G  T+DDL  I  EDF  LLD + NA  D
Sbjct:   53 DANNKNYSKLSEKLNEADIERRXXXXXXXXXXXXXXXXXXXXXXXXXXXKDM--PENQPAGTVDEFMFKEGVQDQLDKLDNDLVGLLAVKRRVKEIAALLVLDKMRRKLGFETSV-PSLHMSFTGAPGTGKTTVAVRMGQILAKMGYARRGHVVLATRDDLVGQYVGHTAPKTKEMIKKAMGGVLLVDEAYYLYNAANDRDYGQESIEILLNVMENNQDDLVVAVAGYKDRMDKFFSYIPGMMSRIGNHIDFPNYSSDELVQIAAVMARDLEYDITPEAYTTFQRYIEARMELPFFSNARTVRNAMDRARMNSAIRTFEKYAIQGYNGGECTVDDLKNISAEDFQILLDDILNADVD 406          
The following BLAST results are available for this feature:
BLAST of NO01G02280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_001712367.15.300e-9654.11cbbx [Hemiselmis andersenii] >ABW98042.1 cbbx [Hem... [more]
XP_002176682.11.200e-9554.91predicted protein [Phaeodactylum tricornutum CCAP ... [more]
CBN77355.13.400e-9553.74cbbX protein [Ectocarpus siliculosus][more]
GAX10130.11.000e-9452.72hypothetical protein FisN_3Lh322 [Fistulifera sola... [more]
GAX16197.11.700e-9452.72hypothetical protein FisN_3Hh322 [Fistulifera sola... [more]
OEU18637.11.100e-9357.67P-loop containing nucleoside triphosphate hydrolas... [more]
EJK74161.12.700e-9249.26hypothetical protein THAOC_04179 [Thalassiosira oc... [more]
XP_005539202.13.500e-9252.56presumed transcriptional regulator for RuBisCO ope... [more]
XP_005779815.14.600e-9250.87hypothetical protein EMIHUDRAFT_468866 [Emiliania ... [more]
XP_002289188.16.100e-9253.50predicted protein [Thalassiosira pseudonana CCMP13... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008107NSK008107Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02280.1NO01G02280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|624747gene_216Nannochloropsis oceanica (N. oceanica CCMP1779)gene
cbbXgene1463Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02280.1NO01G02280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02280 ID=NO01G02280|Name=NO01G02280|organism=Nannochloropsis oceanica|type=gene|length=1923bp
AGTTTTAACACGCAAACGACAACTCCGCAATGGTGGTGACAGCATGGAAG
GCGACTCTTATTGGGAGCTGTCTCTTCTTGGCCAGTGGCTTCCAGgtatg
gcggagggatggtgaaatgttttgtgtttgcaaattcatcatgacggggg
gggccaagtgtgcttgctttcatgtggccacggacctatgtcgtgatcat
gcacatgcactgggtcccaggcttattgagagaagtcatctgtctgtcta
gttatgcttcgacgtgaccctttatgtacacccgccgtcgcatggaccac
tgcttttttgctagcttattttctcgccctttgcctcactcccacgaaaa
gGTGCCTGCGCCCTGCGCTCCGGGCCGTCGCCTGCCAGTGTGCATGGCGG
AGGGAGAGGCGCCCTCCAAGCACGGTGGCCTGACGTACAACAAGGAGAAG
GCCATGGCGGGGGACATCAACTCGGGCAACTACCGCAAGCTGAGTGATGC
CATGATCCGCGCAGAGAAGGAGGCCAAGCGCAACGAGGAAGAGAAAAAGC
AGCGAGAAATGGCTGAGGAACTCGCACGCCAGGCCCGAGCCAAGAAGGTG
GCGAAGTTGAACTCCGTCATGTCCACGCCCAAGCAGACTGTGGGCTCTGC
GGACGAGTTCAGCTGGGATGGCGGCGTGCAGGGTGCGCTTGACAAGCTGG
AGACAGAGCTGATTGGTTTGAAGCCTGTCAAGTCCCGTGTGCGGGAGCTG
GCCAGTATGTTGGTGGTGGACAAGATGCGACAGTCTATCGGGCTTGACCC
CTTCATCTCCGACGGCCTGCACATGTGCTTCACCGGTGCACCCGGCACAG
GAAAGACGACGGTGGCATTCCGCATGGGTGATATCTTCAAGGCAATGGGC
TACTGTCGGTCGGGACACGTGGTGCTGGCCACGCGCGACACGCTGGTAGG
CCAGTATGTCGGGCACACGGGCCCCAAGACAAAGGAGGTGATCAAGCAGG
CGATGGGCGGCATCCTGTTTATTGATGAGGCCTACTATCTGTACAACGCT
GGCAACGACCGGGACTACGGCGTAGAGTCCATCGAGATCCTACTTAAGGT
CATGGAGCAGCGCTCGTCCGACCTTATCGTCATCTTCGCCGGCTATAAGG
ACCGCATGGACCAATTCTTTTCCTACATCCCGGGCATGCAGTCACGTGTA
AACCTGCATATTGACTTTCCCGACATGGAACCCGACGATTTGGTGGAGGT
GGGGAAGCTCATGTTCAATAACATGGAGTACAAGCTTTCTCCTGATGCTG
AGCCTGCTTTGCGTGAGTATGTAACGCTGCGCAAGGACAAACTCTTCTTT
TCCAACGCCCGCTCAGTCCGTAATGCCGTGGACTTAGCGCGCATGTCGGC
AGCAAACCGCGTGTACGAGATCGCGACGGCGCCAGGGGCGACTGGGGTCA
TCACCCTTGATGACCTGACGGAGATCAAGAAGGAGGACTTCGATGGCTTG
TTAGATCTGGTCAGGAACGCCTCAGACGATGCTATCCTTGCCTAAGAGAT
GAAGAAAGTGGGAGCACAATCCTTGGGTTGCATGCGTGTGTCGGAGTGGC
CATCACCCCGCCGTCCCTTCAGAAATTAAAGCCTGTATAGGTTGCGCTAT
GTTTCCCCTTTCGGTTCTGGCATCATAGCCAATCTGAGAAAACTTCATTC
GTCAGGATCGTGGTCAGGGAGAGATCTCAGGAGCAAGAGATAATGAGGCA
CGAATTTGTGAAATCCGTACGTTCATCTTATTAAATCCTGTTTTGTGCTG
TTTGAGTGGTTAAAGCTCTTATGAGTATAGTTGTACGCATTGTAAGCGGG
GGGAAGAAAGAGAAGGAAAATGATATCGCAGACAGATGAGAATGTGGCCA
CTGCAAAAGAATCACATGCGATG
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protein sequence of NO01G02280.1

>NO01G02280.1-protein ID=NO01G02280.1-protein|Name=NO01G02280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=420bp
MVVTAWKATLIGSCLFLASGFQVPAPCAPGRRLPVCMAEGEAPSKHGGLT
YNKEKAMAGDINSGNYRKLSDAMIRAEKEAKRNEEEKKQREMAEELARQA
RAKKVAKLNSVMSTPKQTVGSADEFSWDGGVQGALDKLETELIGLKPVKS
RVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDI
FKAMGYCRSGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAY
YLYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPG
MQSRVNLHIDFPDMEPDDLVEVGKLMFNNMEYKLSPDAEPALREYVTLRK
DKLFFSNARSVRNAVDLARMSAANRVYEIATAPGATGVITLDDLTEIKKE
DFDGLLDLVRNASDDAILA*
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Synonyms
Publications
YearPublication
2017Li Wei, Qintao Wang, Yi Xin, Yandu Lu, Jian Xu. Enhancing photosynthetic biomass productivity of industrial oleaginous microalgae by overexpression of RuBisCO activase. Algal Research, 2017; 27:366-375.