NO01G02280.1, NO01G02280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02280.1
Unique NameNO01G02280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1667
Alignment locationchr1:594696..596618 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:594696..596618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02280.1 vs.
Match: EWM29164.1 (rubisco expression protein [Nannochloropsis gaditana]; EWM29165.1 rubisco expression protein [Nannochloropsis gaditana])

HSP 1 Score: 734.6 bits (1895), Expect = 1.800e-208
Identity = 373/419 (89.02%), Postives = 399/419 (95.23%), Query Frame = 0 
Query:    1 MVVTAWKATLIGSCLFLASGFQVPAPCAPGRRLPVCMAEGEAPSKHGGLTYNKEKAMAGDINSGNYRKLSDAMIRAEKEAKRNEEEKKQREMAEELARQARAKKVAKLNSVMSTPKQTVGSADEFSWDGGVQGALDKLETELIGLKPVKSRVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIFKAMGYCRSGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYYLYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPGMQSRVNLHIDFPDMEPDDLVEVGKLMFNNMEYKLSPDAEPALREYVTLRKDKLFFSNARSVRNAVDLARMSAANRVYEIATAPGATGVITLDDLTEIKKEDFDGLLDLVRNASDDAILA 420
            MV T  KATL+G CLFLASGFQ+PAP A GR LP+ MAE E  SKHGGL Y++EKA++GD N+GN+RKLSDAM+RAEKEAKRNEEE++QREMAEELARQARAKKVAKLN VMSTPKQ VGSADEFSWD GVQ ALD+L+ ELIGLKPVKSRVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIFKAMGYCR+GHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYYLYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPGMQSRVNLHIDFPDMEPDDLV+VGKLMFNNMEYKL+PDAEPALREYVTLRK+KLFFSNARSVRNAVDLARM+AANRVYE+ATAPGA+G+ITLD+LT++KKEDFDGLLDLVRNA + AILA
Sbjct:    1 MVTTMLKATLMGGCLFLASGFQMPAPRAMGRGLPIRMAE-EGGSKHGGLVYDREKALSGDANAGNFRKLSDAMVRAEKEAKRNEEERRQREMAEELARQARAKKVAKLNEVMSTPKQAVGSADEFSWDSGVQTALDRLDNELIGLKPVKSRVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDIFKAMGYCRAGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAYYLYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPGMQSRVNLHIDFPDMEPDDLVDVGKLMFNNMEYKLAPDAEPALREYVTLRKEKLFFSNARSVRNAVDLARMAAANRVYELATAPGASGLITLDELTQVKKEDFDGLLDLVRNAPEGAILA 418
The following BLAST results are available for this feature:
BLAST of NO01G02280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29164.11.800e-20889.02rubisco expression protein [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02280NO01G02280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02280.1NO01G02280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02280.1.cds1NO01G02280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02280.1.cds2NO01G02280.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02280.1 ID=NO01G02280.1|Name=NO01G02280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1667bp
AGTTTTAACACGCAAACGACAACTCCGCAATGGTGGTGACAGCATGGAAG
GCGACTCTTATTGGGAGCTGTCTCTTCTTGGCCAGTGGCTTCCAGGTGCC
TGCGCCCTGCGCTCCGGGCCGTCGCCTGCCAGTGTGCATGGCGGAGGGAG
AGGCGCCCTCCAAGCACGGTGGCCTGACGTACAACAAGGAGAAGGCCATG
GCGGGGGACATCAACTCGGGCAACTACCGCAAGCTGAGTGATGCCATGAT
CCGCGCAGAGAAGGAGGCCAAGCGCAACGAGGAAGAGAAAAAGCAGCGAG
AAATGGCTGAGGAACTCGCACGCCAGGCCCGAGCCAAGAAGGTGGCGAAG
TTGAACTCCGTCATGTCCACGCCCAAGCAGACTGTGGGCTCTGCGGACGA
GTTCAGCTGGGATGGCGGCGTGCAGGGTGCGCTTGACAAGCTGGAGACAG
AGCTGATTGGTTTGAAGCCTGTCAAGTCCCGTGTGCGGGAGCTGGCCAGT
ATGTTGGTGGTGGACAAGATGCGACAGTCTATCGGGCTTGACCCCTTCAT
CTCCGACGGCCTGCACATGTGCTTCACCGGTGCACCCGGCACAGGAAAGA
CGACGGTGGCATTCCGCATGGGTGATATCTTCAAGGCAATGGGCTACTGT
CGGTCGGGACACGTGGTGCTGGCCACGCGCGACACGCTGGTAGGCCAGTA
TGTCGGGCACACGGGCCCCAAGACAAAGGAGGTGATCAAGCAGGCGATGG
GCGGCATCCTGTTTATTGATGAGGCCTACTATCTGTACAACGCTGGCAAC
GACCGGGACTACGGCGTAGAGTCCATCGAGATCCTACTTAAGGTCATGGA
GCAGCGCTCGTCCGACCTTATCGTCATCTTCGCCGGCTATAAGGACCGCA
TGGACCAATTCTTTTCCTACATCCCGGGCATGCAGTCACGTGTAAACCTG
CATATTGACTTTCCCGACATGGAACCCGACGATTTGGTGGAGGTGGGGAA
GCTCATGTTCAATAACATGGAGTACAAGCTTTCTCCTGATGCTGAGCCTG
CTTTGCGTGAGTATGTAACGCTGCGCAAGGACAAACTCTTCTTTTCCAAC
GCCCGCTCAGTCCGTAATGCCGTGGACTTAGCGCGCATGTCGGCAGCAAA
CCGCGTGTACGAGATCGCGACGGCGCCAGGGGCGACTGGGGTCATCACCC
TTGATGACCTGACGGAGATCAAGAAGGAGGACTTCGATGGCTTGTTAGAT
CTGGTCAGGAACGCCTCAGACGATGCTATCCTTGCCTAAGAGATGAAGAA
AGTGGGAGCACAATCCTTGGGTTGCATGCGTGTGTCGGAGTGGCCATCAC
CCCGCCGTCCCTTCAGAAATTAAAGCCTGTATAGGTTGCGCTATGTTTCC
CCTTTCGGTTCTGGCATCATAGCCAATCTGAGAAAACTTCATTCGTCAGG
ATCGTGGTCAGGGAGAGATCTCAGGAGCAAGAGATAATGAGGCACGAATT
TGTGAAATCCGTACGTTCATCTTATTAAATCCTGTTTTGTGCTGTTTGAG
TGGTTAAAGCTCTTATGAGTATAGTTGTACGCATTGTAAGCGGGGGGAAG
AAAGAGAAGGAAAATGATATCGCAGACAGATGAGAATGTGGCCACTGCAA
AAGAATCACATGCGATG
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protein sequence of NO01G02280.1

>NO01G02280.1-protein ID=NO01G02280.1-protein|Name=NO01G02280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=420bp
MVVTAWKATLIGSCLFLASGFQVPAPCAPGRRLPVCMAEGEAPSKHGGLT
YNKEKAMAGDINSGNYRKLSDAMIRAEKEAKRNEEEKKQREMAEELARQA
RAKKVAKLNSVMSTPKQTVGSADEFSWDGGVQGALDKLETELIGLKPVKS
RVRELASMLVVDKMRQSIGLDPFISDGLHMCFTGAPGTGKTTVAFRMGDI
FKAMGYCRSGHVVLATRDTLVGQYVGHTGPKTKEVIKQAMGGILFIDEAY
YLYNAGNDRDYGVESIEILLKVMEQRSSDLIVIFAGYKDRMDQFFSYIPG
MQSRVNLHIDFPDMEPDDLVEVGKLMFNNMEYKLSPDAEPALREYVTLRK
DKLFFSNARSVRNAVDLARMSAANRVYEIATAPGATGVITLDDLTEIKKE
DFDGLLDLVRNASDDAILA*
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mRNA from alignment at chr1:594696..596618-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02280.1 ID=NO01G02280.1|Name=NO01G02280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1923bp|location=Sequence derived from alignment at chr1:594696..596618- (Nannochloropsis oceanica)
AGTTTTAACACGCAAACGACAACTCCGCAATGGTGGTGACAGCATGGAAG
GCGACTCTTATTGGGAGCTGTCTCTTCTTGGCCAGTGGCTTCCAGGTATG
GCGGAGGGATGGTGAAATGTTTTGTGTTTGCAAATTCATCATGACGGGGG
GGGCCAAGTGTGCTTGCTTTCATGTGGCCACGGACCTATGTCGTGATCAT
GCACATGCACTGGGTCCCAGGCTTATTGAGAGAAGTCATCTGTCTGTCTA
GTTATGCTTCGACGTGACCCTTTATGTACACCCGCCGTCGCATGGACCAC
TGCTTTTTTGCTAGCTTATTTTCTCGCCCTTTGCCTCACTCCCACGAAAA
GGTGCCTGCGCCCTGCGCTCCGGGCCGTCGCCTGCCAGTGTGCATGGCGG
AGGGAGAGGCGCCCTCCAAGCACGGTGGCCTGACGTACAACAAGGAGAAG
GCCATGGCGGGGGACATCAACTCGGGCAACTACCGCAAGCTGAGTGATGC
CATGATCCGCGCAGAGAAGGAGGCCAAGCGCAACGAGGAAGAGAAAAAGC
AGCGAGAAATGGCTGAGGAACTCGCACGCCAGGCCCGAGCCAAGAAGGTG
GCGAAGTTGAACTCCGTCATGTCCACGCCCAAGCAGACTGTGGGCTCTGC
GGACGAGTTCAGCTGGGATGGCGGCGTGCAGGGTGCGCTTGACAAGCTGG
AGACAGAGCTGATTGGTTTGAAGCCTGTCAAGTCCCGTGTGCGGGAGCTG
GCCAGTATGTTGGTGGTGGACAAGATGCGACAGTCTATCGGGCTTGACCC
CTTCATCTCCGACGGCCTGCACATGTGCTTCACCGGTGCACCCGGCACAG
GAAAGACGACGGTGGCATTCCGCATGGGTGATATCTTCAAGGCAATGGGC
TACTGTCGGTCGGGACACGTGGTGCTGGCCACGCGCGACACGCTGGTAGG
CCAGTATGTCGGGCACACGGGCCCCAAGACAAAGGAGGTGATCAAGCAGG
CGATGGGCGGCATCCTGTTTATTGATGAGGCCTACTATCTGTACAACGCT
GGCAACGACCGGGACTACGGCGTAGAGTCCATCGAGATCCTACTTAAGGT
CATGGAGCAGCGCTCGTCCGACCTTATCGTCATCTTCGCCGGCTATAAGG
ACCGCATGGACCAATTCTTTTCCTACATCCCGGGCATGCAGTCACGTGTA
AACCTGCATATTGACTTTCCCGACATGGAACCCGACGATTTGGTGGAGGT
GGGGAAGCTCATGTTCAATAACATGGAGTACAAGCTTTCTCCTGATGCTG
AGCCTGCTTTGCGTGAGTATGTAACGCTGCGCAAGGACAAACTCTTCTTT
TCCAACGCCCGCTCAGTCCGTAATGCCGTGGACTTAGCGCGCATGTCGGC
AGCAAACCGCGTGTACGAGATCGCGACGGCGCCAGGGGCGACTGGGGTCA
TCACCCTTGATGACCTGACGGAGATCAAGAAGGAGGACTTCGATGGCTTG
TTAGATCTGGTCAGGAACGCCTCAGACGATGCTATCCTTGCCTAAGAGAT
GAAGAAAGTGGGAGCACAATCCTTGGGTTGCATGCGTGTGTCGGAGTGGC
CATCACCCCGCCGTCCCTTCAGAAATTAAAGCCTGTATAGGTTGCGCTAT
GTTTCCCCTTTCGGTTCTGGCATCATAGCCAATCTGAGAAAACTTCATTC
GTCAGGATCGTGGTCAGGGAGAGATCTCAGGAGCAAGAGATAATGAGGCA
CGAATTTGTGAAATCCGTACGTTCATCTTATTAAATCCTGTTTTGTGCTG
TTTGAGTGGTTAAAGCTCTTATGAGTATAGTTGTACGCATTGTAAGCGGG
GGGAAGAAAGAGAAGGAAAATGATATCGCAGACAGATGAGAATGTGGCCA
CTGCAAAAGAATCACATGCGATG
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Coding sequence (CDS) from alignment at chr1:594696..596618-

>NO01G02280.1 ID=NO01G02280.1|Name=NO01G02280.1|organism=Nannochloropsis oceanica|type=CDS|length=1260bp|location=Sequence derived from alignment at chr1:594696..596618- (Nannochloropsis oceanica)
ATGGTGGTGACAGCATGGAAGGCGACTCTTATTGGGAGCTGTCTCTTCTT
GGCCAGTGGCTTCCAGGTGCCTGCGCCCTGCGCTCCGGGCCGTCGCCTGC
CAGTGTGCATGGCGGAGGGAGAGGCGCCCTCCAAGCACGGTGGCCTGACG
TACAACAAGGAGAAGGCCATGGCGGGGGACATCAACTCGGGCAACTACCG
CAAGCTGAGTGATGCCATGATCCGCGCAGAGAAGGAGGCCAAGCGCAACG
AGGAAGAGAAAAAGCAGCGAGAAATGGCTGAGGAACTCGCACGCCAGGCC
CGAGCCAAGAAGGTGGCGAAGTTGAACTCCGTCATGTCCACGCCCAAGCA
GACTGTGGGCTCTGCGGACGAGTTCAGCTGGGATGGCGGCGTGCAGGGTG
CGCTTGACAAGCTGGAGACAGAGCTGATTGGTTTGAAGCCTGTCAAGTCC
CGTGTGCGGGAGCTGGCCAGTATGTTGGTGGTGGACAAGATGCGACAGTC
TATCGGGCTTGACCCCTTCATCTCCGACGGCCTGCACATGTGCTTCACCG
GTGCACCCGGCACAGGAAAGACGACGGTGGCATTCCGCATGGGTGATATC
TTCAAGGCAATGGGCTACTGTCGGTCGGGACACGTGGTGCTGGCCACGCG
CGACACGCTGGTAGGCCAGTATGTCGGGCACACGGGCCCCAAGACAAAGG
AGGTGATCAAGCAGGCGATGGGCGGCATCCTGTTTATTGATGAGGCCTAC
TATCTGTACAACGCTGGCAACGACCGGGACTACGGCGTAGAGTCCATCGA
GATCCTACTTAAGGTCATGGAGCAGCGCTCGTCCGACCTTATCGTCATCT
TCGCCGGCTATAAGGACCGCATGGACCAATTCTTTTCCTACATCCCGGGC
ATGCAGTCACGTGTAAACCTGCATATTGACTTTCCCGACATGGAACCCGA
CGATTTGGTGGAGGTGGGGAAGCTCATGTTCAATAACATGGAGTACAAGC
TTTCTCCTGATGCTGAGCCTGCTTTGCGTGAGTATGTAACGCTGCGCAAG
GACAAACTCTTCTTTTCCAACGCCCGCTCAGTCCGTAATGCCGTGGACTT
AGCGCGCATGTCGGCAGCAAACCGCGTGTACGAGATCGCGACGGCGCCAG
GGGCGACTGGGGTCATCACCCTTGATGACCTGACGGAGATCAAGAAGGAG
GACTTCGATGGCTTGTTAGATCTGGTCAGGAACGCCTCAGACGATGCTAT
CCTTGCCTAA
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Synonyms
Publications