NO01G01960, NO01G01960 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G01960 vs. NCBI_GenBank
Match: PTQ36169.1 (hypothetical protein MARPO_0066s0117 [Marchantia polymorpha]) HSP 1 Score: 170.6 bits (431), Expect = 4.500e-39 Identity = 79/135 (58.52%), Postives = 105/135 (77.78%), Query Frame = 0 Query: 53 EVGEARKAAARQMEEAADAGSPTIFDKIAKGEIHTDFIYEDDLCVAFKDLSPQGPVHFLVIPKEKQGLTRLSKATEGNKALLGHLLYVAQHVAKEQGLVPGGFRVVINDGVDGSQSVYHLHLHVIGGRQMRWPPG 188 E A +AAA+ + + A+AG PTIFDKI K EI +YED+ +AF+D++PQ P H ++IPK++ GLT+LSKA E +K +LGHL+YVA VAK+ GL GFR+VINDGV+G QSVYHLH+H++GGRQM+WPPG Sbjct: 61 EEENALRAAAQNLAKQAEAGVPTIFDKIVKKEIPCTSVYEDEKVLAFRDINPQAPTHIVIIPKDRDGLTQLSKAEERHKEILGHLMYVATVVAKDLGL-KDGFRIVINDGVNGCQSVYHLHIHLLGGRQMKWPPG 194
BLAST of NO01G01960 vs. NCBI_GenBank
Match: GBG23801.1 (Histidine triad nucleotide-binding protein 1 [Aurantiochytrium sp. FCC1311]) HSP 1 Score: 170.2 bits (430), Expect = 5.900e-39 Identity = 76/120 (63.33%), Postives = 95/120 (79.17%), Query Frame = 0 Query: 68 AADAGSPTIFDKIAKGEIHTDFIYEDDLCVAFKDLSPQGPVHFLVIPKEKQGLTRLSKATEGNKALLGHLLYVAQHVAKEQGLVPGGFRVVINDGVDGSQSVYHLHLHVIGGRQMRWPPG 188 +A G PTIFDKI K EI ++ED+LC+AF+D++PQ P H LVIPKE+ L++LSKA E +K++LGHLLY A VA ++GL G+RVVINDGV+G QSVYHLHLHVIGGRQ+ WPPG Sbjct: 65 SASEGGPTIFDKIIKREIPATVVFEDELCMAFRDVNPQAPTHLLVIPKERGNLSQLSKAQEDDKSMLGHLLYTANRVAAQEGLDKTGYRVVINDGVEGCQSVYHLHLHVIGGRQLTWPPG 184
BLAST of NO01G01960 vs. NCBI_GenBank
Match: PNH03049.1 (zinc-binding protein [Tetrabaena socialis]) HSP 1 Score: 169.9 bits (429), Expect = 7.700e-39 Identity = 88/168 (52.38%), Postives = 111/168 (66.07%), Query Frame = 0 Query: 20 LPLEAGAFITKAASSIIITRFLSSDGKYKQMVDEVGEARKAAARQMEEAADAGSPTIFDKIAKGEIHTDFIYEDDLCVAFKDLSPQGPVHFLVIPKEKQGLTRLSKATEGNKALLGHLLYVAQHVAKEQGLVPGGFRVVINDGVDGSQSVYHLHLHVIGGRQMRWPPG 188 + L + + AA+ + + + + V + +AAA+ AD PTIFDKI I + IYEDD +AF+D+ PQ PVHFLVIPK++ GLTRLSKATE +KALLGHLLYVAQ VA ++ L GFRV INDG +G QSVYHLHLHV+GGRQ+ WPPG Sbjct: 1 MALRSALGLRSAAAQLGLRSVPARAAGVRTRVRAMASVEEAAAKAAAHLADTEPPTIFDKIIDKTIPANIIYEDDEALAFRDIGPQAPVHFLVIPKKRSGLTRLSKATEEHKALLGHLLYVAQLVAMKENL-GEGFRVCINDGPNGCQSVYHLHLHVMGGRQLTWPPG 167
BLAST of NO01G01960 vs. NCBI_GenBank
Match: XP_003060821.1 (predicted protein [Micromonas pusilla CCMP1545] >EEH55590.1 predicted protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 167.9 bits (424), Expect = 2.900e-38 Identity = 79/118 (66.95%), Postives = 94/118 (79.66%), Query Frame = 0 Query: 70 DAGSPTIFDKIAKGEIHTDFIYEDDLCVAFKDLSPQGPVHFLVIPKEKQGLTRLSKATEGNKALLGHLLYVAQHVAKEQGLVPGGFRVVINDGVDGSQSVYHLHLHVIGGRQMRWPPG 188 ++G PTIFDKI EI IYED+LC+AF+D++PQ HFLVIPK + GLTRLS A E +KALLGHLL+ AQ VAK++GL GFRVVINDGV G QSVYHLHLHV+GG+Q+ WPPG Sbjct: 3 NSGEPTIFDKIVAKEIPATVIYEDNLCLAFRDVAPQAKTHFLVIPKIRAGLTRLSNAEEEHKALLGHLLFTAQRVAKDEGL-GEGFRVVINDGVQGCQSVYHLHLHVLGGQQLTWPPG 119
BLAST of NO01G01960 vs. NCBI_GenBank
Match: XP_024369124.1 (14 kDa zinc-binding protein-like [Physcomitrella patens] >XP_024369125.1 14 kDa zinc-binding protein-like [Physcomitrella patens] >XP_024369126.1 14 kDa zinc-binding protein-like [Physcomitrella patens] >PNR60280.1 hypothetical protein PHYPA_003073 [Physcomitrella patens]) HSP 1 Score: 167.2 bits (422), Expect = 5.000e-38 Identity = 78/138 (56.52%), Postives = 104/138 (75.36%), Query Frame = 0 Query: 50 MVDEVGEARKAAARQMEEAADAGSPTIFDKIAKGEIHTDFIYEDDLCVAFKDLSPQGPVHFLVIPKEKQGLTRLSKATEGNKALLGHLLYVAQHVAKEQGLVPGGFRVVINDGVDGSQSVYHLHLHVIGGRQMRWPPG 188 M DE AR AAA ++ A+AG TIFDKI EI + +YEDD +AF+D+SPQGPVH ++IPK++ GLT+LSKA + ++ +LGHL+ A VA+++ L GFR+V+NDG DG QSVYH+HLH+IGGRQM+WPPG Sbjct: 1 MADEEAAARAAAAHHAKQKAEAGELTIFDKIISKEIPSKIVYEDDDVLAFRDVSPQGPVHIILIPKDRDGLTQLSKAEDRHEKILGHLMVTAAKVARQEKL-DKGFRLVVNDGPDGCQSVYHIHLHLIGGRQMKWPPG 137
BLAST of NO01G01960 vs. NCBI_GenBank
Match: EJK53025.1 (hypothetical protein THAOC_27610 [Thalassiosira oceanica]) HSP 1 Score: 166.8 bits (421), Expect = 6.600e-38 Identity = 91/174 (52.30%), Postives = 114/174 (65.52%), Query Frame = 0 Query: 18 STLPLEAGAF---ITKAASSIIITRFLSSDGKYKQMVDEVGEARKAAARQMEEAAD-AGSPTIFDKIAKGEIHTDFIYEDDLCVAFKDLSPQGPVHFLVIPKEKQGLTRLSKATEGNKALLGHLLYVAQHVAKEQGLVPGGFRVVINDGVDGSQSVYHLHLHVIGGRQMRWPPG 188 ST A AF I A++ I R +SS M EV +A+ AAA AD AG T FD I G+ +D +YEDD +AF+D++PQ PVH LVIPK + GLT+LS A E +ALLGHL+YVAQ V K++ P GFR+VINDG G+QSVYHLH+HV+GGRQ+ WPPG Sbjct: 57 STARFSASAFSSPICNASALIHKARLVSSSDTKLAMSSEVDKAKDAAAAYKSSDADGAGPATAFDNILSGKWPSDKVYEDDTALAFRDINPQAPVHVLVIPKIRDGLTKLSCAREDQEALLGHLVYVAQSVGKKE--CPEGFRLVINDGEHGAQSVYHLHIHVLGGRQLGWPPG 228
BLAST of NO01G01960 vs. NCBI_GenBank
Match: XP_002286249.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED95890.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 166.4 bits (420), Expect = 8.600e-38 Identity = 80/139 (57.55%), Postives = 103/139 (74.10%), Query Frame = 0 Query: 50 MVDEVGEARKAA-ARQMEEAADAGSPTIFDKIAKGEIHTDFIYEDDLCVAFKDLSPQGPVHFLVIPKEKQGLTRLSKATEGNKALLGHLLYVAQHVAKEQGLVPGGFRVVINDGVDGSQSVYHLHLHVIGGRQMRWPPG 188 M DEV A++AA A + + AG T+FDKI GE ++ ++EDDL +AF+D+SPQ PVH +VIPK + GLT+LS A E K +LGHL+YVAQ V K++ P GFR+VINDG G+QSVYHLH+HV+GGRQM WPPG Sbjct: 1 MSDEVAAAKEAAQAYKSSDGDGAGPATVFDKILSGEWSSNKVHEDDLALAFRDISPQAPVHVIVIPKHRDGLTKLSNAREDQKDILGHLMYVAQMVGKKE--CPEGFRIVINDGEHGAQSVYHLHIHVLGGRQMGWPPG 137
BLAST of NO01G01960 vs. NCBI_GenBank
Match: XP_013759280.1 (ZB14 zinc-binding protein [Thecamonas trahens ATCC 50062] >KNC47802.1 ZB14 zinc-binding protein [Thecamonas trahens ATCC 50062]) HSP 1 Score: 166.0 bits (419), Expect = 1.100e-37 Identity = 74/118 (62.71%), Postives = 93/118 (78.81%), Query Frame = 0 Query: 70 DAGSPTIFDKIAKGEIHTDFIYEDDLCVAFKDLSPQGPVHFLVIPKEKQGLTRLSKATEGNKALLGHLLYVAQHVAKEQGLVPGGFRVVINDGVDGSQSVYHLHLHVIGGRQMRWPPG 188 D PTIFDKI G+I + ++EDD C+AF D++PQ P HFLVIPK + +++LSKA E +KALLGHL+Y AQ VA+EQG+ GFRVVINDG +G QSVYH+HLHVIGG+Q+ WPPG Sbjct: 11 DMSKPTIFDKIISGDIPANVLFEDDQCMAFSDVNPQAPTHFLVIPKRR--ISQLSKAEEDDKALLGHLMYTAQAVAREQGIADDGFRVVINDGPNGCQSVYHIHLHVIGGKQLSWPPG 126
BLAST of NO01G01960 vs. NCBI_GenBank
Match: XP_011400956.1 (14 kDa zinc-binding protein [Auxenochlorella protothecoides] >KFM27949.1 14 kDa zinc-binding protein [Auxenochlorella protothecoides]) HSP 1 Score: 165.2 bits (417), Expect = 1.900e-37 Identity = 81/132 (61.36%), Postives = 93/132 (70.45%), Query Frame = 0 Query: 56 EARKAAARQMEEAADAGSPTIFDKIAKGEIHTDFIYEDDLCVAFKDLSPQGPVHFLVIPKEKQGLTRLSKATEGNKALLGHLLYVAQHVAKEQGLVPGGFRVVINDGVDGSQSVYHLHLHVIGGRQMRWPPG 188 E AA AA + PTIFDKI EI IYEDD +AF+D+SPQ P+HFLVIPK GL++LSKA E KALLGHL +VA V ++ PGGFRVV+NDG DG QSVYHLHLHVIGGRQ+ WPPG Sbjct: 4 ETEAAARAAASGAATSAQPTIFDKIVAKEIPAKIIYEDDQALAFRDVSPQAPIHFLVIPKVVDGLSQLSKAREDQKALLGHLFWVAGQVGTKE--CPGGFRVVVNDGKDGCQSVYHLHLHVIGGRQLAWPPG 133
BLAST of NO01G01960 vs. NCBI_GenBank
Match: XP_011310653.1 (PREDICTED: histidine triad nucleotide-binding protein 1 [Fopius arisanus]) HSP 1 Score: 165.2 bits (417), Expect = 1.900e-37 Identity = 85/163 (52.15%), Postives = 117/163 (71.78%), Query Frame = 0 Query: 28 ITKAASSIIITRFLSSDGK---YKQMVDEVGEARKAAARQMEEAADAGSPTIFDKIAKGEIHTDFIYEDDLCVAFKDLSPQGPVHFLVIPKEKQGLTRLSKATEGNKALLGHLLYVAQHVAKEQGLVPGGFRVVINDGVDGSQSVYHLHLHVIGGRQMRWPPG 188 + + +S I+ +R + G+ +++M EV +A ++A AG TIF KI + EI +FIYED+ CVAF D++PQ PVHFLVIP++ + +LSKA +G++ +LGHL+ VA+ VAKEQGL GFRVVINDG DG+QSVYHLH+HV+GGRQM+WPPG Sbjct: 9 LVQNSSKIVTSRPIGFRGQLFPFRKMASEVEKA---------QSATAGGDTIFGKILRKEIPCNFIYEDNQCVAFNDVNPQSPVHFLVIPRKP--IPQLSKAEDGDELILGHLMNVARKVAKEQGL-DKGFRVVINDGADGAQSVYHLHIHVLGGRQMKWPPG 159 The following BLAST results are available for this feature:
BLAST of NO01G01960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G01960 ID=NO01G01960|Name=NO01G01960|organism=Nannochloropsis oceanica|type=gene|length=2807bpback to top protein sequence of NO01G01960.2 >NO01G01960.2-protein ID=NO01G01960.2-protein|Name=NO01G01960.2|organism=Nannochloropsis oceanica|type=polypeptide|length=186bpback to top protein sequence of NO01G01960.1 >NO01G01960.1-protein ID=NO01G01960.1-protein|Name=NO01G01960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=188bpback to top Synonyms
Publications
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