NO01G00790, NO01G00790 (gene) Nannochloropsis oceanica

Overview
NameNO01G00790
Unique NameNO01G00790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1233
Alignment locationchr1:197951..199183 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:197951..199183 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
Homology
The following BLAST results are available for this feature:
BLAST of NO01G00790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00790.1NO01G00790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00790.1NO01G00790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00790 ID=NO01G00790|Name=NO01G00790|organism=Nannochloropsis oceanica|type=gene|length=1233bp
ATGCCATTATCTTCCTCGTCGGTAGTAGAACCAGATATTCTACCAGGAGC
TGAGGCACCAGCAGAAAAAGCAGCACCAGCACCAGCAGACGTAGCAGCAG
TCACATATGTGGCCCCGGCAGCCGCGGTCATGAATCCCTCCCTTTCTCCA
GCCCCCTCCCCCGCCCTCGGCGACTTCGTGGACACTGAGAGCTGGCGGGC
ATCATTCGCCGACGACGATGGCACCAGCACTAACAACAACAACAGCAGCA
ACAGCAATACAACCACCACCACCACCACCAAACGCGGTATCCTCGCCTTC
CTCCGCCCAACTCCTCCCCCCCTCCGCTGCCCCGCCCTCCCTCTTCCCAT
CCCTCCCCCACATCCCCCCCGCCTGCGTCACTGGCGGCAATTTTTTACCC
ACTTTCAAACCAACACTCAACGGTCACGTACCCGTTTCGCTATCCGCACT
CTCCTCACACACCGCCTCCGCCCCTTCTCCACCACTCTCCCCCCCTCCCT
CCCTCACCCGCACCCTCGTTCCATCACGGGCCTGGCTGAAGGGCGAACGA
GCACCAGTGTCACCGACCCGCCGTCGGTCCTCCGTTTCGATGCCGTTGGG
GCGTTGCTGGCCGTTGGGACCACTCACGGCGTTGTCCGCATTTTTGACTT
CGATGAATTCCTCTCTGTGATTGCCACCCGCCCTGCCCACCCTCCTTCCC
TTCCTCCTTGCTTCCCTGACCTTCAACACTTGCCCCGGCAGCGTCAACAG
CAGCTGCTACAAGAGCAGCAGTATCAACGGCAGCAGCAGCAGCACCCTCC
CTTGCTCACGCTGGAGCCACGCAAGGCCGTTTCGGCTGTGGAATGGAACG
CGGAGCAAGATACTCACCTGGCAGTCGCCTTCTGGCACTGGCCCGAGGTT
TATCTCTACGATCTCGCCTCCTTCTCCTCCCTCCCTACCTCCATCTTCAA
AGTCGGCCACCGGGTCAAGGGCGCGGCGGGAGGGAATCACTCCCTGGTGT
GTTTCTCGTCCGGGGGAAAAGGCGGGATAGAGGGACGGAGGACCACCACG
TTGATTGCGGGCAGTGCGTACGGAGTGCTGAGGGGATGGAGAGTAGGGTC
ACCGGCGAGTGTGTGCTGGGAAGTTAAGACGAGGGGAAACATGGCTCTAT
CAGCGCTGTGCGTGACGGGGTCTCTAGTGGTGGGGGCAGGGGGGGGGGAG
GAAGGGAAGGAGGGGGGGCGGAGGTGGAGGTGA
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protein sequence of NO01G00790.1

>NO01G00790.1-protein ID=NO01G00790.1-protein|Name=NO01G00790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MPLSSSSVVEPDILPGAEAPAEKAAPAPADVAAVTYVAPAAAVMNPSLSP
APSPALGDFVDTESWRASFADDDGTSTNNNNSSNSNTTTTTTTKRGILAF
LRPTPPPLRCPALPLPIPPPHPPRLRHWRQFFTHFQTNTQRSRTRFAIRT
LLTHRLRPFSTTLPPSLPHPHPRSITGLAEGRTSTSVTDPPSVLRFDAVG
ALLAVGTTHGVVRIFDFDEFLSVIATRPAHPPSLPPCFPDLQHLPRQRQQ
QLLQEQQYQRQQQQHPPLLTLEPRKAVSAVEWNAEQDTHLAVAFWHWPEV
YLYDLASFSSLPTSIFKVGHRVKGAAGGNHSLVCFSSGGKGGIEGRRTTT
LIAGSAYGVLRGWRVGSPASVCWEVKTRGNMALSALCVTGSLVVGAGGGE
EGKEGGRRWR*
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Synonyms
Publications