NO01G00450, NO01G00450 (gene) Nannochloropsis oceanica

Overview
NameNO01G00450
Unique NameNO01G00450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length978
Alignment locationchr1:122838..123815 -

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Properties
Property NameValue
Description4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:122838..123815 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029062Class_I_gatase-like
IPR002818ThiJ/PfpI
Homology
[Close]
BLAST of NO01G00450 vs. NCBI_GenBank
Match: OHB66324.1 (dihydroxyacetone kinase [Planctomycetes bacterium RBG_13_62_9])

HSP 1 Score: 182.6 bits (462), Expect = 1.600e-42
Identity = 108/196 (55.10%), Postives = 130/196 (66.33%), Query Frame = 0 
Query:   58 VLVPVADGSEEIESVTIIDVLVRAGATVTVASVMPSSXXXXXXXSPVNKHQVTCSRGVKLVADKGIDDCLEQEWDLIACPGGLPGAEYLRDSSSLLTLLTKQEASKKYIAAICASPAMVLQTHGFLKGRSATCFPAERFTTTLEKYQGKDGGAVVVDGHVVTSRGPGTTMVFALKLVELLFGMDKAKEVAGGLLVT 254
            VLVP+ADGSEEIE+V IID L RAGA VTVA+V   +         +   QVT SRGVKLVAD  I DC  Q +D IA PGG+PGAE+LRDS+ L+ +L KQ+ + +   AICA+PA+ L+ HG L    ATCFP+ R       Y   D   VVVDG+ VTS+GP T + FALKLVELLFG  KAKEV   +LVT
Sbjct:    5 VLVPIADGSEEIEAVCIIDTLRRAGAEVTVATVETQN---------LASLQVTASRGVKLVADARIADCASQTYDCIALPGGMPGAEHLRDSAELIEMLKKQKQAGRLYGAICAAPAVALRPHGLLDKVRATCFPSLR-NKLDPAYVSTD--RVVVDGNCVTSQGPATAIDFALKLVELLFGPAKAKEVGSAMLVT 188
[Close]
BLAST of NO01G00450 vs. NCBI_GenBank
Match: PNV84867.1 (DJ-1 family protein [Desulfobacteraceae bacterium])

HSP 1 Score: 181.8 bits (460), Expect = 2.700e-42
Identity = 103/195 (52.82%), Postives = 133/195 (68.21%), Query Frame = 0 
Query:   58 VLVPVADGSEEIESVTIIDVLVRAGATVTVASVMPSSXXXXXXXSPVNKHQVTCSRGVKLVADKGIDDCLEQEWDLIACPGGLPGAEYLRDSSSLLTLLTKQEASKKYIAAICASPAMVLQTHGFLKGRSATCFPAERFTTTLEKYQGKDGGAVVVDGHVVTSRGPGTTMVFALKLVELLFGMDKAKEVAGGLLV 253
            +LVP+A+G+EEIE+V IIDVL RA ++VTVAS              V++ QV  SRGVKLVADK I DC+++ +DL+  PGG+PGAE+LRDS  L  +L +Q    K   AICA+PA+VLQ HG L  R ATC P+  F + LE     +   VVVDG  VTSRGPGT + FALKLVELL+G +KA+EVA  +++
Sbjct:    5 ILVPIANGTEEIEAVCIIDVLRRAESSVTVAS--------------VHELQVIASRGVKLVADKLIGDCVDETYDLVVLPGGMPGAEHLRDSKDLQRILKRQREEGKLYGAICAAPAVVLQHHGLLDQRKATCHPS--FVSHLENTDSVE-SRVVVDGTCVTSRGPGTALEFALKLVELLYGKEKAEEVAAPMIM 182
[Close]
BLAST of NO01G00450 vs. NCBI_GenBank
Match: OEU44596.1 (dihydroxyacetone kinase [Desulfobacterales bacterium S7086C20])

HSP 1 Score: 179.5 bits (454), Expect = 1.300e-41
Identity = 102/197 (51.78%), Postives = 129/197 (65.48%), Query Frame = 0 
Query:   58 VLVPVADGSEEIESVTIIDVLVRAGATVTVASVMPSSXXXXXXXSPVNKHQVTCSRGVKLVADKGIDDCLEQEWDLIACPGGLPGAEYLRDSSSLLTLLTKQEASKKYIAAICASPAMVLQTHGFLKGRSATCFPAERFTTTLEKYQGKDGGAVVVDGHVVTSRGPGTTMVFALKLVELLFGMDKAKEVAGGLLVTY 255
            VLVP+A+G+EE+E+VTI+DVL RAGA VTVAS              V+  QVT SRGVKLVAD+ I DC    +DL+  PGG+PGAE LRDS  L  LL +Q+   +   AICASPA+VL+ HG L GR ATC+P   F T L+  +      VVVD   VTS+GPGT + F+L LVELLFG +KA E+A  ++  +
Sbjct:    5 VLVPIAEGTEELEAVTIVDVLRRAGAVVTVAS--------------VSGLQVTASRGVKLVADRLIADCATNVYDLVVLPGGMPGAENLRDSPELEILLRRQQKEGRLFGAICASPAVVLEHHGLLAGRRATCYPT--FATKLKSAEAAQ-SRVVVDDKCVTSQGPGTALDFSLTLVELLFGKEKAGEIAEAMVAAW 184
[Close]
BLAST of NO01G00450 vs. NCBI_GenBank
Match: OLP89380.1 (Protein DJ-1-like B [Symbiodinium microadriaticum])

HSP 1 Score: 179.1 bits (453), Expect = 1.800e-41
Identity = 103/197 (52.28%), Postives = 125/197 (63.45%), Query Frame = 0 
Query:   58 VLVPVADGSEEIESVTIIDVLVRAGATVTVASVMPSSXXXXXXXSPVNKHQVTCSRGVKLVADKGIDDCLEQEWDLIACPGGLPGAEYLRDSSSLLTLLTKQEASKKYIAAICASPAMVLQTHGFLKGRSATCFPAERFTTTLEKYQGKDGGAVVVDGHVVTSRGPGTTMVFALKLVELLFGMDKAKEVAGGLLVTY 255
            VLVPVADGSEEIE+  I D L R G  VTVASVMP             K QV  SRG+ +VAD  I+DC   EWD IA PGG+PGAE+LRD ++L  LL  Q    K  AA+CASPA+V  THG L  +S TC+P  +F   +    G      V+DGH++TS+GPGT++ FALK+ E L G DKA EVA G+LV Y
Sbjct:    4 VLVPVADGSEEIETTCITDTLTRCGCQVTVASVMP------------GKLQVKMSRGINVVADCAIEDCKGTEWDAIALPGGMPGAEHLRDCAALTELLKDQSGKGKVTAAVCASPAVVFGTHGLLPEKS-TCYP--KFKDVVG--AGWQDAQAVMDGHIITSQGPGTSIQFALKIGEKLCGKDKAVEVAKGMLVDY 183
[Close]
BLAST of NO01G00450 vs. NCBI_GenBank
Match: WP_096895354.1 (DJ-1 family protein [Candidatus Scalindua sp. husup-a2] >GAX61980.1 intracellular protease/amidase [Candidatus Scalindua sp. husup-a2])

HSP 1 Score: 178.3 bits (451), Expect = 3.000e-41
Identity = 101/195 (51.79%), Postives = 127/195 (65.13%), Query Frame = 0 
Query:   58 VLVPVADGSEEIESVTIIDVLVRAGATVTVASVMPSSXXXXXXXSPVNKHQVTCSRGVKLVADKGIDDCLEQEWDLIACPGGLPGAEYLRDSSSLLTLLTKQEASKKYIAAICASPAMVLQTHGFLKGRSATCFPAERFTTTLEKYQGKDGGAVVVDGHVVTSRGPGTTMVFALKLVELLFGMDKAKEVAGGLLV 253
            VLVP+ADGSE+IE+ +I+DVL RAGATVTVASV                 Q+T S G+KL+AD+ I +C+   +DLI  PGG+PGAE+LRDS  L+ +L +Q+   K  AAICASP +VL  HG L  R AT +P   F   LE     D   VVVD + +TSRGPGT + FALKLVE L+G  KAKE+A  +LV
Sbjct:    5 VLVPIADGSEDIETASIVDVLSRAGATVTVASVCAL--------------QITASNGLKLIADQLISECVNNSYDLIVLPGGMPGAEHLRDSKELVKMLKRQQEEGKLYAAICASPFVVLHHHGLLADRKATAYPG--FAEQLENSDSID-SRVVVDKNCITSRGPGTAVEFALKLVEELYGEQKAKEIAEAMLV 182
[Close]
BLAST of NO01G00450 vs. NCBI_GenBank
Match: WP_077539720.1 (hypothetical protein [Phycisphaerae bacterium L21-RPul-D3] >AQQ09196.1 Chaperone protein YajL [Phycisphaerae bacterium L21-RPul-D3])

HSP 1 Score: 177.6 bits (449), Expect = 5.100e-41
Identity = 98/194 (50.52%), Postives = 126/194 (64.95%), Query Frame = 0 
Query:   59 LVPVADGSEEIESVTIIDVLVRAGATVTVASVMPSSXXXXXXXSPVNKHQVTCSRGVKLVADKGIDDCLEQEWDLIACPGGLPGAEYLRDSSSLLTLLTKQEASKKYIAAICASPAMVLQTHGFLKGRSATCFPAERFTTTLEKYQGKDGGAVVVDGHVVTSRGPGTTMVFALKLVELLFGMDKAKEVAGGLLV 253
            L+P+ADGSEE+E+VTIIDVL RAG  +T+ASV   S              VT SRG KLVAD  I+ C   E+DLI  PGG+PGAE+LRDS  L  +L  Q  +++  AAICASPA+VL +HG + G+  TC+P    +      +G+D   VV DG+ +TSRGPGT M FALKL ELL G + A++ A G+LV
Sbjct:    6 LLPIADGSEELEAVTIIDVLRRAGTELTIASVADIS--------------VTMSRGTKLVADAPIEVCSGNEYDLIVLPGGMPGAEHLRDSRILTEMLKTQAEARRLYAAICASPAIVLASHGLMAGKKGTCYPGLEHSLADSYLEGED---VVADGNCITSRGPGTAMAFALKLAELLEGKENAEKTAQGMLV 182
[Close]
BLAST of NO01G00450 vs. NCBI_GenBank
Match: WP_018276483.1 (DJ-1 family protein [Teredinibacter turnerae])

HSP 1 Score: 176.8 bits (447), Expect = 8.700e-41
Identity = 105/201 (52.24%), Postives = 134/201 (66.67%), Query Frame = 0 
Query:   58 VLVPVADGSEEIESVTIIDVLVRAGATVTVASVMPSSXXXXXXXSPVNKHQVTCSRGVKLVADKGIDDCLEQEWDLIACPGGLPGAEYLRDSSSLLTLLTKQEASKKYIAAICASPAMVLQTHGFLKGRSATCFP-------AERFTTTLEKYQGKDGGAVVVDGHVVTSRGPGTTMVFALKLVELLFGMDKAKEVAGGLL 252
            VLVP+ADGSEEIE+VTIIDVLVRAGA VTVASVM              +  +T SRGVKL A+  I+ C  Q+WDLIA PGGLPGA++L  S+ L+ L+  Q A ++ +AAICA+PA+VL  HG L  R ATC+P       ++  T ++E+        VV DG+++TS+GPGT M F+L LV  LFGM+KA  VA GLL
Sbjct:    4 VLVPIADGSEEIEAVTIIDVLVRAGAEVTVASVM-------------ERTGITASRGVKLDANCLIESC-GQDWDLIALPGGLPGADHLAQSAPLMALVRHQLAEQRLLAAICAAPAVVLGRHGLLADRVATCYPGFQEELASQARTVSVER--------VVEDGNLITSQGPGTAMEFSLALVTRLFGMEKATAVANGLL 182
[Close]
BLAST of NO01G00450 vs. NCBI_GenBank
Match: OHB60628.1 (dihydroxyacetone kinase, partial [Planctomycetes bacterium RBG_13_50_24])

HSP 1 Score: 176.4 bits (446), Expect = 1.100e-40
Identity = 102/190 (53.68%), Postives = 126/190 (66.32%), Query Frame = 0 
Query:   58 VLVPVADGSEEIESVTIIDVLVRAGATVTVASVMPSSXXXXXXXSPVNKHQVTCSRGVKLVADKGIDDCLEQEWDLIACPGGLPGAEYLRDSSSLLTLLTKQEASKKYIAAICASPAMVLQTHGFLKGRSATCFPAERFTTTLEKYQGKDGGAVVVDGHVVTSRGPGTTMVFALKLVELLFGMDKAKEVA 248
            VLV +ADG+EE+E+VTIIDVL RA A VTVAS              V+  QVT SRGVKLVAD  I DC  + +DLIA PGG+PGAE+LRD S L  +L  Q AS +  AAICASPA+ L+ HG LK + ATC+P     + L +    +   VVVDG+ +TS+GP T + FALKLVELLF   K++EVA
Sbjct:    5 VLVVIADGTEELEAVTIIDVLRRAKADVTVAS--------------VDDKQVTASRGVKLVADAVISDCAGKVYDLIALPGGMPGAEHLRDCSRLTDMLKAQAASGRLYAAICASPAVALKPHGLLKNKKATCYP-----SLLSELDIAEQANVVVDGNCITSQGPATALEFALKLVELLFDKQKSREVA 175
[Close]
BLAST of NO01G00450 vs. NCBI_GenBank
Match: OHB49588.1 (dihydroxyacetone kinase [Planctomycetes bacterium GWF2_41_51])

HSP 1 Score: 176.0 bits (445), Expect = 1.500e-40
Identity = 97/197 (49.24%), Postives = 134/197 (68.02%), Query Frame = 0 
Query:   58 VLVPVADGSEEIESVTIIDVLVRAGATVTVASVMPSSXXXXXXXSPVNKHQVTCSRGVKLVADKGIDDCLEQEWDLIACPGGLPGAEYLRDSSSLLTLLTKQEASKKYIAAICASPAMVLQTHGFLKGRSATCFPAERFTTTLEKYQGKD--GGAVVVDGHVVTSRGPGTTMVFALKLVELLFGMDKAKEVAGGLLV 253
            VLVPVADG+EE+E++ IID L R GA VT+AS              V K Q+  SR VK+ AD  + DC    +DLIA PGG+PGAE+LRD + L+ +L KQ+ + ++ AAICASPA+VL+ HG L G+ ATC+PA       +K + K+  G  VVVDG+ +TS+G GT M F+LKLVE+L+G++K+KE+A  ++V
Sbjct:    5 VLVPVADGTEELEAIAIIDCLRRMGADVTIAS--------------VQKLQIITSRKVKITADCLLSDCKADTYDLIALPGGMPGAEHLRDCADLVEMLKKQKEAGRFYAAICASPAVVLEHHGLLAGKKATCYPA-----MSDKLKNKEAAGQRVVVDGNCITSQGAGTAMEFSLKLVEVLYGVEKSKELAKTMVV 182
[Close]
BLAST of NO01G00450 vs. NCBI_GenBank
Match: OLQ07259.1 (Protein DJ-1-like B [Symbiodinium microadriaticum])

HSP 1 Score: 176.0 bits (445), Expect = 1.500e-40
Identity = 98/194 (50.52%), Postives = 131/194 (67.53%), Query Frame = 0 
Query:   58 VLVPVADGSEEIESVTIIDVLVRAGATVTVASVMPSSXXXXXXXSPVNKHQVTCSRGVKLVADKGIDDCLEQEWDLIACPGGLPGAEYLRDSSSLLTLLTKQEASKKYIAAICASPAMVLQTHGFLKGRSATCFPAERFTTTLEKYQGKDGGAVVVDGHVVTSRGPGTTMVFALKLVELLFGMDKAKEVAGGLL 252
            VLVP+A+ SEEIE+  I DVL RAGA VTVASV  +              QV  SRG+K+VAD  I++C +Q WD+IA PGG+PGAE+LRDS  L+ LL  Q+ S +  AA+CASPA+V   HG +K  +ATC+PA +F   +    G      VVDG+V+TS+GPGT++ FALK+VE L+G DKA+E+A  ++
Sbjct:   72 VLVPIAEDSEEIETACITDVLTRAGADVTVASVSGAL-------------QVRMSRGLKVVADTSIEECADQPWDVIALPGGMPGAEHLRDSQVLVDLLKAQKESGRVTAAVCASPAVVFAHHGIVKD-AATCYPAPQFKELVG--AGWKDAKAVVDGNVITSQGPGTSLQFALKIVEQLYGKDKAEELAAQMV 249
The following BLAST results are available for this feature:
BLAST of NO01G00450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OHB66324.11.600e-4255.10dihydroxyacetone kinase [Planctomycetes bacterium ... [more]
PNV84867.12.700e-4252.82DJ-1 family protein [Desulfobacteraceae bacterium][more]
OEU44596.11.300e-4151.78dihydroxyacetone kinase [Desulfobacterales bacteri... [more]
OLP89380.11.800e-4152.28Protein DJ-1-like B [Symbiodinium microadriaticum][more]
WP_096895354.13.000e-4151.79DJ-1 family protein [Candidatus Scalindua sp. husu... [more]
WP_077539720.15.100e-4150.52hypothetical protein [Phycisphaerae bacterium L21-... [more]
WP_018276483.18.700e-4152.24DJ-1 family protein [Teredinibacter turnerae][more]
OHB60628.11.100e-4053.68dihydroxyacetone kinase, partial [Planctomycetes b... [more]
OHB49588.11.500e-4049.24dihydroxyacetone kinase [Planctomycetes bacterium ... [more]
OLQ07259.11.500e-4050.52Protein DJ-1-like B [Symbiodinium microadriaticum][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL006nonsL006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008342NSK008342Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00450.1NO01G00450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575933gene_22Nannochloropsis oceanica (N. oceanica CCMP1779)gene
thiJgene1640Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00450.1NO01G00450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00450 ID=NO01G00450|Name=NO01G00450|organism=Nannochloropsis oceanica|type=gene|length=978bp
AGGCAGACCAGCTGTAAGTGCACGTATTATTCGCAGAGCTTGGAATGGCA
GCAGgtaaggtcaacctcctcaccccacataacgctttcccccggtcgct
ccctcacttcctttgcttccctttcccgcacgctctcattcagTTTTCTT
CTCCATTCCAACCACTGATACATGACGACATTTTGCTTCTCTGCCCTCTT
CATCACCATGCTCTGTCTCTCCACCTTTCTTCCACGTACCACCACTGCCT
TTCTCCTTCGTTCCTCCTCCTCGTCATCCCTCCGCCCGACCTTTCACCGC
CGCTTCTCCTCCTCTTCAACCCCTGCAGCAACCCAGAAGAAAGTGCTCGT
CCCCGTTGCGGACGGCTCGGAAGAGATCGAATCTGTGACCATCATCGATG
TTCTCGTGCGCGCTGGCGCGACCGTCACCGTCGCCTCCGTCATGCCCTCT
TCCGCGTCCCCTTCCTCCTCCTCCTCCCCTGTCAACAAGCACCAGGTGAC
CTGCTCCCGCGGTGTAAAGCTCGTGGCCGACAAGGGCATCGACGACTGCC
TTGAGCAGGAGTGGGACCTCATTGCTTGCCCCGGCGGGCTTCCGGGTGCG
GAATATCTGCGTGATTCTTCCTCTCTCCTCACCCTCCTGACGAAGCAAGA
GGCTTCCAAAAAATACATCGCTGCTATATGTGCTTCGCCTGCCATGGTCT
TACAGACCCACGGGTTCTTAAAAGGCAGGTCCGCCACGTGTTTCCCCGCG
GAGCGCTTCACGACGACGCTGGAGAAGTACCAAGGGAAGGACGGAGGGGC
GGTGGTGGTCGATGGGCATGTGGTGACAAGTCGGGGCCCGGGGACGACGA
TGGTCTTTGCCTTAAAGTTGGTCGAGCTTTTGTTTGGCATGGATAAGGCA
AAGGAGGTGGCAGGGGGGCTGCTGGTTACCTACCCGGAGGAAGGGTAGAG
AGGGAGGGGGGAAGGAGGGAGGGAGGGA
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protein sequence of NO01G00450.1

>NO01G00450.1-protein ID=NO01G00450.1-protein|Name=NO01G00450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MTTFCFSALFITMLCLSTFLPRTTTAFLLRSSSSSSLRPTFHRRFSSSST
PAATQKKVLVPVADGSEEIESVTIIDVLVRAGATVTVASVMPSSASPSSS
SSPVNKHQVTCSRGVKLVADKGIDDCLEQEWDLIACPGGLPGAEYLRDSS
SLLTLLTKQEASKKYIAAICASPAMVLQTHGFLKGRSATCFPAERFTTTL
EKYQGKDGGAVVVDGHVVTSRGPGTTMVFALKLVELLFGMDKAKEVAGGL
LVTYPEEG*
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Synonyms
Publications