NO01G00450.1, NO01G00450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00450.1
Unique NameNO01G00450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length889
Alignment locationchr1:122838..123815 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:122838..123815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G00450.1 vs.
Match: EWM28975.1 (4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis [Nannochloropsis gaditana])

HSP 1 Score: 290.4 bits (742), Expect = 5.400e-75
Identity = 165/255 (64.71%), Postives = 199/255 (78.04%), Query Frame = 0
Query:    6 FSALFITMLCLSTFLPRTTTAFLLRSSS--SSSLRPTFHRRFSSSSTPAATQKKVLVPVADGSEEIESVTIIDVLVRAGATVTVASVMPSSASPSSSSSPVNKHQVTCSRGVKLVADKGIDDCLEQEWDLIACPGGLPGAEYLRDSSSLLTLLTKQEASKKYIAAICASPAMVLQTHGFLKGRSATCFPAERFTTTLEKYQGKDGGAVVVDGHVVTSRGPGTTMVFALKLVELLFGMDKAKEVAGGLLVTYPEEG 259
            FS   I +LC+ + +  T++AFLLR+    S +   T+ R F SSS+  A  KKVLVPVADGSEEIESVTIIDVLVRAGA VTVASVMPS+++ +  SS     QVTCSRGVKLVADKGIDDCL +EWDLIACPGGLPGAE+LRDS +LLTLL +Q+ +++ +AAICASPA+VL THGFL G+ ATCFPAERF ++L +Y+  + G VV DGHVVTSRGPGTT+ FAL LV+ L G  KA+EVA GLLV YP +G
Sbjct:   37 FSTTAIAILCMYSIILPTSSAFLLRARPFPSPAATSTWSRCFLSSSSTPAAPKKVLVPVADGSEEIESVTIIDVLVRAGAAVTVASVMPSASTATLPSS----WQVTCSRGVKLVADKGIDDCLGEEWDLIACPGGLPGAEHLRDSPALLTLLQRQDKAQRLVAAICASPAVVLHTHGFLTGKRATCFPAERFVSSLARYEDGEEG-VVEDGHVVTSRGPGTTLRFALTLVDRLCGRAKAEEVAKGLLVDYPGKG 286          
The following BLAST results are available for this feature:
BLAST of NO01G00450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28975.15.400e-7564.714-methyl-5(b-hydroxyethyl)-thiazole monophosphate ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00450NO01G00450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00450.1NO01G00450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00450.1.cds1NO01G00450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00450.1 ID=NO01G00450.1|Name=NO01G00450.1|organism=Nannochloropsis oceanica|type=mRNA|length=889bp
AGGCAGACCAGCTGTAAGTGCACGTATTATTCGCAGAGCTTGGAATGGCA
GCAGTTTTCTTCTCCATTCCAACCACTGATACATGACGACATTTTGCTTC
TCTGCCCTCTTCATCACCATGCTCTGTCTCTCCACCTTTCTTCCACGTAC
CACCACTGCCTTTCTCCTTCGTTCCTCCTCCTCGTCATCCCTCCGCCCGA
CCTTTCACCGCCGCTTCTCCTCCTCTTCAACCCCTGCAGCAACCCAGAAG
AAAGTGCTCGTCCCCGTTGCGGACGGCTCGGAAGAGATCGAATCTGTGAC
CATCATCGATGTTCTCGTGCGCGCTGGCGCGACCGTCACCGTCGCCTCCG
TCATGCCCTCTTCCGCGTCCCCTTCCTCCTCCTCCTCCCCTGTCAACAAG
CACCAGGTGACCTGCTCCCGCGGTGTAAAGCTCGTGGCCGACAAGGGCAT
CGACGACTGCCTTGAGCAGGAGTGGGACCTCATTGCTTGCCCCGGCGGGC
TTCCGGGTGCGGAATATCTGCGTGATTCTTCCTCTCTCCTCACCCTCCTG
ACGAAGCAAGAGGCTTCCAAAAAATACATCGCTGCTATATGTGCTTCGCC
TGCCATGGTCTTACAGACCCACGGGTTCTTAAAAGGCAGGTCCGCCACGT
GTTTCCCCGCGGAGCGCTTCACGACGACGCTGGAGAAGTACCAAGGGAAG
GACGGAGGGGCGGTGGTGGTCGATGGGCATGTGGTGACAAGTCGGGGCCC
GGGGACGACGATGGTCTTTGCCTTAAAGTTGGTCGAGCTTTTGTTTGGCA
TGGATAAGGCAAAGGAGGTGGCAGGGGGGCTGCTGGTTACCTACCCGGAG
GAAGGGTAGAGAGGGAGGGGGGAAGGAGGGAGGGAGGGA
back to top

protein sequence of NO01G00450.1

>NO01G00450.1-protein ID=NO01G00450.1-protein|Name=NO01G00450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MTTFCFSALFITMLCLSTFLPRTTTAFLLRSSSSSSLRPTFHRRFSSSST
PAATQKKVLVPVADGSEEIESVTIIDVLVRAGATVTVASVMPSSASPSSS
SSPVNKHQVTCSRGVKLVADKGIDDCLEQEWDLIACPGGLPGAEYLRDSS
SLLTLLTKQEASKKYIAAICASPAMVLQTHGFLKGRSATCFPAERFTTTL
EKYQGKDGGAVVVDGHVVTSRGPGTTMVFALKLVELLFGMDKAKEVAGGL
LVTYPEEG*
back to top

mRNA from alignment at chr1:122838..123815-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00450.1 ID=NO01G00450.1|Name=NO01G00450.1|organism=Nannochloropsis oceanica|type=mRNA|length=978bp|location=Sequence derived from alignment at chr1:122838..123815- (Nannochloropsis oceanica)
AGGCAGACCAGCTGTAAGTGCACGTATTATTCGCAGAGCTTGGAATGGCA GCAGGTAAGGTCAACCTCCTCACCCCACATAACGCTTTCCCCCGGTCGCT CCCTCACTTCCTTTGCTTCCCTTTCCCGCACGCTCTCATTCAGTTTTCTT CTCCATTCCAACCACTGATACATGACGACATTTTGCTTCTCTGCCCTCTT CATCACCATGCTCTGTCTCTCCACCTTTCTTCCACGTACCACCACTGCCT TTCTCCTTCGTTCCTCCTCCTCGTCATCCCTCCGCCCGACCTTTCACCGC CGCTTCTCCTCCTCTTCAACCCCTGCAGCAACCCAGAAGAAAGTGCTCGT CCCCGTTGCGGACGGCTCGGAAGAGATCGAATCTGTGACCATCATCGATG TTCTCGTGCGCGCTGGCGCGACCGTCACCGTCGCCTCCGTCATGCCCTCT TCCGCGTCCCCTTCCTCCTCCTCCTCCCCTGTCAACAAGCACCAGGTGAC CTGCTCCCGCGGTGTAAAGCTCGTGGCCGACAAGGGCATCGACGACTGCC TTGAGCAGGAGTGGGACCTCATTGCTTGCCCCGGCGGGCTTCCGGGTGCG GAATATCTGCGTGATTCTTCCTCTCTCCTCACCCTCCTGACGAAGCAAGA GGCTTCCAAAAAATACATCGCTGCTATATGTGCTTCGCCTGCCATGGTCT TACAGACCCACGGGTTCTTAAAAGGCAGGTCCGCCACGTGTTTCCCCGCG GAGCGCTTCACGACGACGCTGGAGAAGTACCAAGGGAAGGACGGAGGGGC GGTGGTGGTCGATGGGCATGTGGTGACAAGTCGGGGCCCGGGGACGACGA TGGTCTTTGCCTTAAAGTTGGTCGAGCTTTTGTTTGGCATGGATAAGGCA AAGGAGGTGGCAGGGGGGCTGCTGGTTACCTACCCGGAGGAAGGGTAGAG AGGGAGGGGGGAAGGAGGGAGGGAGGGA
back to top

Coding sequence (CDS) from alignment at chr1:122838..123815-

>NO01G00450.1 ID=NO01G00450.1|Name=NO01G00450.1|organism=Nannochloropsis oceanica|type=CDS|length=777bp|location=Sequence derived from alignment at chr1:122838..123815- (Nannochloropsis oceanica)
ATGACGACATTTTGCTTCTCTGCCCTCTTCATCACCATGCTCTGTCTCTC
CACCTTTCTTCCACGTACCACCACTGCCTTTCTCCTTCGTTCCTCCTCCT
CGTCATCCCTCCGCCCGACCTTTCACCGCCGCTTCTCCTCCTCTTCAACC
CCTGCAGCAACCCAGAAGAAAGTGCTCGTCCCCGTTGCGGACGGCTCGGA
AGAGATCGAATCTGTGACCATCATCGATGTTCTCGTGCGCGCTGGCGCGA
CCGTCACCGTCGCCTCCGTCATGCCCTCTTCCGCGTCCCCTTCCTCCTCC
TCCTCCCCTGTCAACAAGCACCAGGTGACCTGCTCCCGCGGTGTAAAGCT
CGTGGCCGACAAGGGCATCGACGACTGCCTTGAGCAGGAGTGGGACCTCA
TTGCTTGCCCCGGCGGGCTTCCGGGTGCGGAATATCTGCGTGATTCTTCC
TCTCTCCTCACCCTCCTGACGAAGCAAGAGGCTTCCAAAAAATACATCGC
TGCTATATGTGCTTCGCCTGCCATGGTCTTACAGACCCACGGGTTCTTAA
AAGGCAGGTCCGCCACGTGTTTCCCCGCGGAGCGCTTCACGACGACGCTG
GAGAAGTACCAAGGGAAGGACGGAGGGGCGGTGGTGGTCGATGGGCATGT
GGTGACAAGTCGGGGCCCGGGGACGACGATGGTCTTTGCCTTAAAGTTGG
TCGAGCTTTTGTTTGGCATGGATAAGGCAAAGGAGGTGGCAGGGGGGCTG
CTGGTTACCTACCCGGAGGAAGGGTAG
back to top
Synonyms
Publications