NO01G00320, NO01G00320 (gene) Nannochloropsis oceanica

Overview
NameNO01G00320
Unique NameNO01G00320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2405
Alignment locationchr1:64480..66884 +

Link to JBrowse

Properties
Property NameValue
DescriptionATP-sensitive inward rectifier potassium channel 8
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:64480..66884 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0071805potassium ion transmembrane transport
GO:0034765regulation of ion transmembrane transport
GO:0034220ion transmembrane transport
GO:0006813potassium ion transport
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005242inward rectifier potassium channel activity
GO:0005244voltage-gated ion channel activity
GO:0005242inward rectifier potassium channel activity
Vocabulary: INTERPRO
TermDefinition
IPR014756Ig_E-set
IPR016449K_chnl_inward-rec_Kir
Homology
BLAST of NO01G00320 vs. NCBI_GenBank
Match: GAX25930.1 (potassium inwardly-rectifying channel subfamily J member 8 [Fistulifera solaris])

HSP 1 Score: 167.2 bits (422), Expect = 1.500e-37
Identity = 121/384 (31.51%), Postives = 184/384 (47.92%), Query Frame = 0
Query:  180 RSRLVERHATRTGQVKGSRWNMTRVGWGDGIQDSLESLLY---DSFNTLLMAPTGYTLAFLACAYLSLVMLFAGVYVVLSRQEECNMDIDSFLKGYLFSLETMATVGFGAKDMYFGECTAPTMIVTLQIFVSIFVDAVFIGLIFLRFSRPHKRAQALLFSEVAVIRPASPEESHALVLAAPSPPSLPLSLPPSPYIFSLRVAELTRYELISPRVRLYAIRHSSSPFSLPXXXXXXXXXXXXXXXXPTSRLFFQTYPLPLLLPSHPSXXXXXXXXXXXAVALLPSSPLVPPQ---------WEEGNE-----EQLAAFWKEVEMEVLVLIEGVDPLTSNSLQAKFSYKWEDVCYGSAFAPCLLM-RHHDGGCVLDVAKFHQTQRV 546
            R RL++RHA R  + + +R   T        +   +++L+   D F+TL    T   + +L   Y++LV+ FAG+Y  LSR   C MD+   ++   FSL T AT+G+G  D YFG C  P  +V +Q++ ++  DAV IGLIF R SR HKR + + FS VA IR    +                       +   +R+AE  R+ LI  +VR Y +RH                              F T P+   L SH               AL  +SPLVPP+         W   ++     E L  +W++ ++EV+VL+EG+D LT +  Q + SY  E++ + + F PC+    +++GGCV+D A+FH+TQ V
Sbjct:   40 RRRLLDRHAIRHVEREQARSTAT-ASTSTSFRHMRQTVLWWWNDWFHTLAYQKTTTLITYLFITYVTLVLTFAGLYYTLSRTIGCEMDLHVLMEALYFSLSTQATIGYGVSDYYFGGCWTPFGLVLVQVWTALLFDAVAIGLIFQRLSRGHKRGKTVWFSRVACIRRVQDQ-----------------------WYLYIRLAEGRRHPLIQTQVRGYCVRHE-------------RYRETASPNHTLQTTHFVTRPV-RWLESH----VWMRLPQVLVHALDATSPLVPPKDGWYDAQGHWRSTSDSTTFNESLQEYWQDRQLEVIVLLEGIDALTGSMSQTQHSYTLENIVWDAQFVPCVRPDTNNNGGCVVDFAQFHETQPV 381          
BLAST of NO01G00320 vs. NCBI_GenBank
Match: EWM28949.1 (hypothetical protein Naga_100389g4, partial [Nannochloropsis gaditana])

HSP 1 Score: 160.6 bits (405), Expect = 1.400e-35
Identity = 121/249 (48.59%), Postives = 148/249 (59.44%), Query Frame = 0
Query:   45 SPHP-TGGLQMATRN-------------GGGGLGMPKKTQMEEEVDRQTPLLDESLNTHHHNDGMEETDEERGGVCSIHASTAATDAAANGAQAPIRGRSASSPPHLIPTTTSSFRARLLPSHLHGSSTSGREVGVENSARGSNRRRSGRSRLVERHATRTGQVKGSRWNMTRVGWGDGIQDSLESLLYDSFNTLLMAPTGYTLAFLACAYLSLVMLFAGVYVVLSRQEECNMDIDSFLKGYLFSLETM 280
            SP P +  LQM+ RN             GGGGL   K    E+E+DR TPLLD ++ +    D   E +E   G  ++   + A  A A+         S + P   +PT T   R+RLLPS  H SS         +S   SN      SRLV RHA R GQ KGSRWN+ RVG G+ + +S+ SLL DSFNTLLMAPT YTLAFLA AYL LV+LFAG+Y++L+ +EECNMDIDSFLKGYLFSLETM
Sbjct:    6 SPQPGSSVLQMSFRNYESCAEGSGGMDVGGGGLSQQKLE--EQELDRCTPLLD-AVESALDPDSTNE-EERHAGKFNLPLGSTARPANASRLHLDASTASLAQP---VPTPTGR-RSRLLPS-AHSSS---------SSLCSSNPASRQGSRLVVRHARRRGQAKGSRWNVVRVGKGEKLPESVGSLLTDSFNTLLMAPTAYTLAFLASAYLFLVVLFAGIYLLLALEEECNMDIDSFLKGYLFSLETM 236          
BLAST of NO01G00320 vs. NCBI_GenBank
Match: GAX28146.1 (potassium inwardly-rectifying channel subfamily J member 15 [Fistulifera solaris])

HSP 1 Score: 159.1 bits (401), Expect = 4.000e-35
Identity = 110/340 (32.35%), Postives = 163/340 (47.94%), Query Frame = 0
Query:  220 DSFNTLLMAPTGYTLAFLACAYLSLVMLFAGVYVVLSRQEECNMDIDSFLKGYLFSLETMATVGFGAKDMYFGECTAPTMIVTLQIFVSIFVDAVFIGLIFLRFSRPHKRAQALLFSEVAVIRPASPEESHALVLAAPSPPSLPLSLPPSPYIFSLRVAELTRYELISPRVRLYAIRHSSSPFSLPXXXXXXXXXXXXXXXXPTSRLFFQTYPLPLLLPSHPSXXXXXXXXXXXAVALLPSSPLVPPQ---------WEEGNE-----EQLAAFWKEVEMEVLVLIEGVDPLTSNSLQAKFSYKWEDVCYGSAFAPCLLMRHHDGGCVLDVAKFHQTQRV 546
            D F+TL    T   + +L   Y++LV+ FAG+Y  LSR   C MD+   ++   FSL T AT+G+G  D YFG C  P  +V +Q++ ++  DA+ IGLIF R SR HKR + + FS VA IR  +  + H                  S +   +R+ E  R+ LI  +VR Y +RH                              F T PL   L SH               AL  +SPLVPP+         W   N+     + L  +W++ + E++VL+EG+D LT +  Q + SY  E++ + + F PC +    +GGCV+D A+FH+T+ V
Sbjct:   93 DWFHTLAYQRTTTLITYLFVTYVTLVLTFAGLYYTLSRTIGCEMDLHVLMEALYFSLSTQATIGYGVSDYYFGGCWTPFGLVLVQVWTALLFDAIAIGLIFQRLSRGHKRGKTVWFSRVACIRRVT-TQGH------------------SQWYLYIRLGEGRRHPLIQTQVRGYCVRHE----------RYRETGNHHNSDNTLQTTHFVTRPL-RWLESH----VWMRLPQVLVHALDETSPLVPPKDGWYDAQGHWRSINDSSTFPQSLQEYWQDRQSELIVLLEGIDALTGSMSQTQHSYTMENIVWDAQFVPC-VRPDTNGGCVVDFAQFHETRPV 397          
BLAST of NO01G00320 vs. NCBI_GenBank
Match: GAX95255.1 (Hypothetical protein PINS_003147 [Pythium insidiosum])

HSP 1 Score: 131.3 bits (329), Expect = 8.900e-27
Identity = 102/416 (24.52%), Postives = 166/416 (39.90%), Query Frame = 0
Query:  198 RWNMTRVGWGDGIQDSLESLLYDSFNTLLMAPTGYTLAFLACAYLSLVMLFAGVYVVLSRQEECNMDIDSFLKGYLFSLETMATVGFGAK--DMYFGECTAPTMIVTLQIFVSIFVDAVFIGLIFLRFSRPHKRAQALLFSEVAVIRPASPEESHALVLAAPSPPSLPLSLPPSPYIFSLRVAELTRYELISPRVRLYAIRHSSSPFSLPXXXXXXXXXXXXXXXXPTSRLFFQTYPLPLLLPSHPSXXXXXXXXXXXAVALL-PSSPLVPPQ-----------------------------------------------------------------WEEGNEEQLAAFWKEVEMEVLVLIEGVDPLTSNSLQAKFSYKWEDVCYGSAFAPCLLMRHHDGGCVLDVAKFHQTQRV 546
            RWN+ R    D ++   +  L D F+TL+       LA L   YL+ + +FAG+Y+ +   EEC   I +F   + FS+    T+GFG    D++FGEC     I+T++  VS+F++AV +G+ F R +R   RA  ++ S  AV+R                              F  +V E+ +++L+   VR+YA+RH                             +FQ+YP+ +  P                V  + P SPL+ P+                                                                   E   + +  FW E ++E++VL+EG+D +TS ++Q + SYK ED+ +   F  C+ +    GG V+D  +FHQT+ V
Sbjct:   76 RWNIRR----DKVEHYWKLYLQDPFHTLVHMRLAKVLAVLLALYLAALFIFAGLYLTVP-TEECRTSIQTFHDSFSFSVSVFFTIGFGTNGGDVFFGECAWMQTIITMESLVSVFLEAVALGITFQRIARAQSRANTVVLSHTAVVRRIR-----------------------GHLYFMFQVCEMRKHQLVEGHVRMYAVRHD---------------------VEXGQHYYFQSYPMRIQHPDDELGGMLLLALPSVVVHRIDPWSPLLRPKSALSCGLHHNAATSYMFPDVQVRGIDLDNGDRDRSIPVDTTVNRICNRCRCTEPDAAAAAASEEPTHESQIQDIINFWNESQLEIVVLLEGIDAVTSATIQVRHSYKIEDILFDHRFENCVDVDPATGGAVVDXKRFHQTRPV 442          
BLAST of NO01G00320 vs. NCBI_GenBank
Match: CCI43367.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 129.8 bits (325), Expect = 2.600e-26
Identity = 105/398 (26.38%), Postives = 176/398 (44.22%), Query Frame = 0
Query:  177 RSGRSRLVERHATRTGQVKGS--RWNMTRVG--WGDGIQDSLESLLYDSFNTLLMAPTGYTLAFLACAYLSLVMLFAGVYVVLSRQE-ECNMDIDSFLKGYLFSLETMATVGFGA--KDMYFGECTAPTMIVTLQIFVSIFVDAVFIGLIFLRFSRPHKRAQALLFSEVAVIRPASPEESHALVLAAPSPPSLPLSLPPSPYIFSLRVAELTRYELISPRVRLYAIRHSSSPFSLPXXXXXXXXXXXXXXXXPTSRLFFQTYPLPLL------LPSHPSXXXXXXXXXXXAVALL-PSSPLVPPQWEEGNEE----------------QLAAFWKEVEMEVLVLIEGVDPLTSNSLQAKFSYKWEDVCYGSAFAPCLLMRHHDGGCVLDVAKFHQTQR 545
            RS R+R V+R     G  + S  R+N+ R+G  W     D       D F+T++   T   +  +   Y  +++LFA  Y+ +SR E  C++ + + ++ Y+FSLET+ T+G+GA   D+++G C    ++++L+ +  IF+D++ IG+ F RF+R +KRA  ++F+   +IR                            Y F  +  E  +++L+   VRLYAIR       +                           P  ++       P  P            A A   P   LV    E GN +                Q+    K  E+E++V++EG+D  TS ++QA+ SY   D+ + S+F PC + R  +G  V+D  KFH  +R
Sbjct:   19 RSSRARFVDRQ----GHFRQSLGRFNIQRIGGDWRKRYYD-------DPFHTVVNTSTSRIVIGIFALYTLIILLFAFAYLCISRIEANCHVGLQTVMEAYIFSLETIMTIGYGAPTNDIFYGGCKTMAILLSLEAYAGIFLDSICIGMFFTRFARANKRANTIMFTNYGIIREIR-----------------------GHYYFMCQTCERRKHQLVEAHVRLYAIRREFDERGICENMFQSQVMRIQQPDDDLGATLLMALPQTIIHRIDPWSPLFPPECLPKEFCPMMAPAYPDPCQRLV--DMENGNRDGVVPGKSIPYQLPSRFQIEQHLKRSELEIVVILEGIDGSTSATMQARHSYIDSDIAWDSSFEPC-VYRSSEGKIVIDFDKFHSIRR 379          
BLAST of NO01G00320 vs. NCBI_GenBank
Match: XP_009841723.1 (hypothetical protein H257_15338 [Aphanomyces astaci] >ETV68769.1 hypothetical protein H257_15338 [Aphanomyces astaci])

HSP 1 Score: 128.6 bits (322), Expect = 5.800e-26
Identity = 95/356 (26.69%), Postives = 170/356 (47.75%), Query Frame = 0
Query:  199 WNMTRVG--WGDGIQDSLESLLYDSFNTLLMAPTGYTLAFLACAYLSLVMLFAGVYVVLSR-QEECNMDIDSFLKGYLFSLETMATVGFGA--KDMYFGECTAPTMIVTLQIFVSIFVDAVFIGLIFLRFSRPHKRAQALLFSEVAVIRPASPEESHALVLAAPSPPSLPLSLPPSPYIFSLRVAELTRYELISPRVRLYAI--RHSSSPFSLPXXXXXXXXXXXXXXXXPTSRLFFQTYPLPLLLPSHPSXXXXXXXXXXXAVALL-PSSPLVPPQWEEGNEE------QLAAFWKEVEMEVLVLIEGVDPLTSNSLQAKFSYKWEDVCYGSAFAPCLLMRHHDGGCVLDVAKFH 541
            +N++RVG  W     D       D F+T++   T   L+ +   Y ++V  FA +Y  +S+  E+C++ I + ++ Y+FS+ET+ T+G+GA   D+++G C++  +++T++    IF+D++  G+ F+RFSR  +RA +++FS+ AV++    E                       Y    +V E  R++L+   VR Y +  RHS +P                          FQT P+ +  P                V  + PSSPL PP     +        ++A    + ++E++V++EG D  + N++QA++SY  +D+ +   FAPC+       G V+D   FH
Sbjct:   50 YNISRVGGNWRQIYWD-------DLFHTVIHTNTIRMLSGIFLTYTAVVFFFATLYYSVSQHDEQCHVGISTLMEAYIFSVETIMTIGYGAPTNDIFYGGCSSMALLLTVESVSGIFLDSLCFGVFFVRFSRATRRATSVVFSKHAVVQQIHGE-----------------------YCVLFQVCERRRHQLVEAHVRCYGVAKRHSDAP--------------------------FQTLPMRIQSPDDNLGAFVLLALPQLIVHRIDPSSPLFPPPASSTSSTSSVTQCEIAHHMAQSDLELVVVLEGTDATSGNTMQARYSYTADDIKWHHTFAPCVSRDPVTHGAVVDFDLFH 349          
BLAST of NO01G00320 vs. NCBI_GenBank
Match: XP_012194295.1 (hypothetical protein SPRG_00682 [Saprolegnia parasitica CBS 223.65] >KDO34619.1 hypothetical protein SPRG_00682 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 128.6 bits (322), Expect = 5.800e-26
Identity = 105/409 (25.67%), Postives = 171/409 (41.81%), Query Frame = 0
Query:  177 RSGRSRLVERHATRTGQVKGSRWNMTRVGWGDGIQDSLESLLYDS-FNTLLMAPTGYTLAFLACAYLSLVMLFAGVYVVLS-RQEECNMDIDSFLKGYLFSLETMATVGFGA--KDMYFGECTAPTMIVTLQIFVSIFVDAVFIGLIFLRFSRPHKRAQALLFSEVAVIRPASPEESHALVLAAPSPPSLPLSLPPSPYIFSLRVAELTRYELISPRVRLYAIRHSSSPFSLPXXXXXXXXXXXXXXXXPTSRLFFQTYPLPLLLPSHPSXXXXXXXXXXXAVALLPS-SPLVPPQ-----------------------WEEGN--------------EEQLAAFWKEVEMEVLVLIEGVDPLTSNSLQAKFSYKWEDVCYGSAFAPCLLMRHHDGGCVLDVAKFHQTQ 544
            R G   + E      GQ+   ++N+ RVG       S   + +D  ++T++   T   +  +   Y  ++  FA  Y  +S +  EC++ I S  + Y+FS+ET+ T+G+GA   D+++G C +   ++T++ F  IF+D++ IG+ F+RFSR   R+ +++FS+ AVIR                            Y    +V E  +++L+   VR Y IRH  +P                     T    FQT+ + L  P                V  +   SPL P +                        E GN              EEQ+       E+EVLV++EG D  TSN++QA++SY   D+ +   F  C+      GG  +D  KFH  +
Sbjct:   28 RGGNHAIPESQYGLLGQMSFGKYNIQRVG------GSWRKIYWDDLYHTVINTRTARLVTAVFVVYACVIFFFAIAYQTVSLKDPECHVGISSLTEAYIFSVETIMTIGYGAPSDDIFYGGCGSMAFLLTMESFAGIFLDSILIGMFFVRFSRADTRSLSIVFSKDAVIRKIR-----------------------GGYYLMFQVCERRKHQLVEAHVRCYGIRHEIAP-------------------DGTEEALFQTHHMRLQQPDDDIGAYLLMALPQLVVHRIDQWSPLFPRECLPTDYYASTCPGFPDPCQRAIDHENGNRDYERGAAEPVAPTEEQIRRHLATSELEVLVILEGEDSTTSNTMQARYSYTLHDLQWHCVFDTCVSRNVSSGGVTIDFDKFHHVR 388          
BLAST of NO01G00320 vs. NCBI_GenBank
Match: CCA20392.1 (animal inward rectifier K channel (IRKC) family protein putative [Albugo laibachii Nc14])

HSP 1 Score: 127.9 bits (320), Expect = 9.800e-26
Identity = 103/393 (26.21%), Postives = 177/393 (45.04%), Query Frame = 0
Query:  178 SGRSRLVERHATRTGQVKGS--RWNMTRVG--WGDGIQDSLESLLYDSFNTLLMAPTGYTLAFLACAYLSLVMLFAGVYVVLSRQE-ECNMDIDSFLKGYLFSLETMATVGFGA--KDMYFGECTAPTMIVTLQIFVSIFVDAVFIGLIFLRFSRPHKRAQALLFSEVAVIRPASPEESHALVLAAPSPPSLPLSLPPSPYIFSLRVAELTRYELISPRVRLYAI-------------------RHSSSPFSLPXXXXXXXXXXXXXXXXPTSRLF----FQTYPLPLLLPSHPSXXXXXXXXXXXAVALLPSSPLVPPQWEEGNEEQLAAFWKEVEMEVLVLIEGVDPLTSNSLQAKFSYKWEDVCYGSAFAPCLLMRHHDGGCVLDVAKFH 541
            S R R V+R     G  + S  R+N+ R+G  W     D       D F+T++   T   +  +   Y  +++LFA  Y+ +SR E  C++ +++ ++ Y+FSLET+ T+G+GA   D+++G C    ++++L+ +  IF+D++ IG+ F RF+R +KRA  ++F+   +IR                            Y F  +  E  +++L+   VRLYAI                   R       L                 P S LF           ++ P++P            +     S   VP  ++  +  Q+    K  E+E++V++EG+D  TS ++QA+ SY   D+ + S+F PC + R +DG  V+D  KFH
Sbjct:   20 SSRVRFVDRQ----GHFRQSLGRFNIKRIGGDWRKRYYD-------DPFHTVVNTSTSRIVIGIFALYTLIILLFAFAYLFVSRVESNCHVGLNTVMEAYIFSLETIMTIGYGAPTNDIFYGGCKTMAILLSLEAYAGIFLDSICIGMFFTRFARANKRANTIMFTNYGIIREIR-----------------------GHYYFMCQTCERRKHQLVEAHVRLYAIHREFDERGICENMFQSHVMRIQQPDDDLGSTLLMALPQTIIHRIDPWSPLFPPECLPNEYCSMMAPAYPDPCQRLVDMENGSRDGFASEKTVP--YQLPSRSQIEKHLKRSELEIVVILEGIDGSTSATMQARHSYIDSDIAWDSSFEPC-VYRSNDGKIVIDFDKFH 375          
BLAST of NO01G00320 vs. NCBI_GenBank
Match: OQS04533.1 (inward rectifier K channel (IRK-C) family protein [Thraustotheca clavata])

HSP 1 Score: 125.6 bits (314), Expect = 4.900e-25
Identity = 107/407 (26.29%), Postives = 178/407 (43.73%), Query Frame = 0
Query:  177 RSGRSRLVERHATRTGQVKGSRWNMTRVG--WGDGIQDSLESLLYDSFNTLLMAPTGYTLAFLACAYLSLVMLFAGVYVVLSRQE-ECNMDIDSFLKGYLFSLETMATVGFGA--KDMYFGECTAPTMIVTLQIFVSIFVDAVFIGLIFLRFSRPHKRAQALLFSEVAVIRPASPEESHALVLAAPSPPSLPLSLPPSPYIFSLRVAELTRYELISPRVRLYAIRHSSSPFSLPXXXXXXXXXXXXXXXXPTSRLFFQTYPLPLLLPSHPSXXXXXXXXXXXAVALLPS-SPL-----VPPQW------------------EEGN--------------EEQLAAFWKEVEMEVLVLIEGVDPLTSNSLQAKFSYKWEDVCYGSAFAPCLLMRHHDGGCVLDVAKFH 541
            R G+  +        G++    +N+ RVG  W     D       D F+T++   T   +  +   Y  ++  FA  Y  +S ++ EC++ I S  + Y+FS+ET+ T+G+GA   D+++G C++   ++T++ F  IF+D++ IG+ F+RFSR   RA +++FS+ AVIR                            Y F  +V E  +++L+   VR Y IR+  S                         LFFQT+ + L  P                +  + + SPL     +PP +                  + GN              EEQ+    ++ E+EVLV++EG D  TSN++QA++SY   D+ +   F  C + R+   G V+D  KFH
Sbjct:   25 RGGKHTIPVSEYGLIGRMSFGIYNIQRVGGAWRKIYWD-------DMFHTVINTRTSRLVTAVFVVYALVIFFFAIAYQTISEKDPECHVGIKSLTEAYIFSVETIMTIGYGAPSDDIFYGGCSSMAFLLTMESFSGIFLDSILIGMFFVRFSRADTRAYSIVFSKDAVIRKIR-----------------------GHYYFMFQVCERRKHQLVEAHVRCYGIRNEVS-------------------ADGDEGLFFQTHHMRLQQPDDDIGAYLLMALPQIVIHRIDAWSPLFPRECLPPDYYASTCPAFPDPMQRAIDHDNGNRDYDPDAVVPTGPTEEQIRRHIEKSELEVLVILEGEDSTTSNTMQARYSYTLHDIAWNCTFEKC-VYRNPTDGIVVDFDKFH 381          
BLAST of NO01G00320 vs. NCBI_GenBank
Match: XP_004997248.1 (hypothetical protein PTSG_01277 [Salpingoeca rosetta] >EGD80687.1 hypothetical protein PTSG_01277 [Salpingoeca rosetta])

HSP 1 Score: 125.2 bits (313), Expect = 6.400e-25
Identity = 111/401 (27.68%), Postives = 181/401 (45.14%), Query Frame = 0
Query:  186 RHATRTGQVKGSR--WNMTRVGWGDGIQDSLESLLY--DSFNTLLMAPTGYTLAFLACAYLSLVMLFAGVYVVLSRQEECNMDIDSFLKGYLFSLETMATVGFGAKDMYFGECTAPTMIVTLQIFVSIFVDAVFIGLIFLRFSRPHKRAQALLFSEVAVIRPASPEESHALVLAAPSPPSLPLSLPPSPYIFSLRVAELTRYELISPRVRLYAIRH---SSSPFSLP-XXXXXXXXXXXXXXXXPTSRLFFQTYPLPLLLPSHPSXXXXXXXXXXXAVALLPS-SPLVPPQWEEGNE-------------------------------------EQLAAFWKEVEMEVLVLIEGVDPLTSNSLQAKFSYKWEDVCYGSAFAPCLLMRHHDGGCVLDVAKFH 541
            R   R G  K SR  +NM R+     I  +  + L+  D F+TLL   +      L   Y+S V+L+AG+Y ++S  E C++ + +F   ++ S+ET+ T+G+G    YF  C A   +V  Q    +F+DA+ IGLIF R SR ++R+  ++FS  A+IR                          + + F  +V +L +Y L+   VR+YAIRH   SS   ++P                   + ++FQ++ + L  P+               +  + + SPL+P    +G+E                                     EQ+   +K   +EVL L+EG+D  TS ++QA+ SY  +DV +   FAPC + +   G CVLD+++FH
Sbjct:   85 RFLDRRGLFKQSRGSFNMRRI-----IPRAAVASLHMRDWFHTLLTMSSLKIGLVLLVIYVSAVLLWAGLYHLIS--EPCDLQLHTFEDAFMLSIETLTTIGYGVPSPYFNGCLAGPFVVLSQSAAGLFIDALCIGLIFARISRGNRRSFTIVFSNNAIIRQIG-----------------------NNWYFLFQVCDLKKYALVEAHVRMYAIRHRTVSSGGRAVPRSSGPARTISSSSSPPLDPTHVWFQSHAMRLTHPNDELGGMLLLSLPDQVLHRIDAWSPLMPTP-HDGSEHDPSTSFQFPEPLMRVVDVENGGREPKSKRAPAVTTKEQIIEKFKRDNIEVLCLVEGIDAATSYTVQARHSYTIDDVVFEQQFAPC-VQQDATGECVLDLSRFH 453          
The following BLAST results are available for this feature:
BLAST of NO01G00320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
GAX25930.11.500e-3731.51potassium inwardly-rectifying channel subfamily J ... [more]
EWM28949.11.400e-3548.59hypothetical protein Naga_100389g4, partial [Nanno... [more]
GAX28146.14.000e-3532.35potassium inwardly-rectifying channel subfamily J ... [more]
GAX95255.18.900e-2724.52Hypothetical protein PINS_003147 [Pythium insidios... [more]
CCI43367.12.600e-2626.38unnamed protein product [Albugo candida][more]
XP_009841723.15.800e-2626.69hypothetical protein H257_15338 [Aphanomyces astac... [more]
XP_012194295.15.800e-2625.67hypothetical protein SPRG_00682 [Saprolegnia paras... [more]
CCA20392.19.800e-2626.21animal inward rectifier K channel (IRKC) family pr... [more]
OQS04533.14.900e-2526.29inward rectifier K channel (IRK-C) family protein ... [more]
XP_004997248.16.400e-2527.68hypothetical protein PTSG_01277 [Salpingoeca roset... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00320.1NO01G00320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668130gene_4Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100389g4gene1660Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00320.1NO01G00320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00320 ID=NO01G00320|Name=NO01G00320|organism=Nannochloropsis oceanica|type=gene|length=2405bp
AAAAACACAAGATCCTGAGGGCAGCAAGAACAGCCCGGCATGAGCGCCTA
CCGTCCTTTGCGAGAGgtgagtgtgttcatccaatcagcaattacagacc
ccatccctgtcaatgtcaatccttgcttcttttatgctcgtagcactcac
caagcctcctcctcccactcaaaacgacagCCTCAGTTCTCCACCAGTAG
CAGTATTAATAGTCTAGGCGAACAAAACCGGGTGCCTTGTCCCTCTCGAC
ACCACACCGAGGAACGGCCTTCCTCTCCTCCCCACTCTCCCCATCCAACG
GGCGGGCTTCAGATGGCCACCCGCAATGGTGGAGGAGGACTGGGCATGCC
AAAAAAGACGCAAATGGAAGAGGAAGTAGACCGACAGACTCCTCTCCTAG
ATGAATCGCTCAATACCCATCACCACAATGACGGCATGGAGGAGACAGAC
GAGGAGAGAGGCGGGGTATGCAGCATCCACGCATCAACTGCCGCCACCGA
TGCAGCTGCTAATGGTGCTCAAGCTCCTATAAGGGGCAGATCCGCGTCGT
CTCCACCACATCTCATCCCTACCACCACGTCCTCCTTCCGGGCCCGTCTC
TTGCCTTCGCATTTACATGGTTCTTCCACCTCAGGAAGAGAAGTAGGAGT
AGAAAATAGTGCCAGAGGCAGCAACAGAAGGAGGAGCGGTAGAAGCCGAC
TCGTAGAAAGACACGCCACGCGGACGGGACAAGTCAAGGGGAGTCGGTGG
AACATGACTCGAGTGGGGTGGGGCGACGGGATCCAGGACTCCCTCGAGAG
TCTGCTTTACGACTCGTTCAACACGCTGCTGATGGCGCCCACCGGGTATA
CGCTGGCATTCCTCGCCTGTGCGTACCTGAGCCTGGTGATGCTTTTTGCA
GGGGTCTATGTGGTGCTGAGCAGGCAGGAGGAGTGCAACATGGACATTGA
TAGCTTTCTGAAGGGGTATCTCTTCAGTCTCGAGACAATGgtaaggcgag
gatgggaagggaaggagggagggaaggaaggaggaagggagggagggagg
gagggagcaagtgagcaagggagcaaggaaggcaagaaggaaaggaggga
aagtggaaccctacactgacgaacaggtcatccgcacgctgagaactaac
cacccttccctcctttcgtccctccctccagGCCACTGTCGGTTTTGGCG
CGAAAGACATGTATTTTGGGGAATGCACGGCCCCGACCATGATAGTGACG
CTGCAGATCTTCGTCTCCATATTCGTCGACGCAGTCTTCATCGGACTCAT
TTTCCTTCGCTTCTCCCGGCCGCATAAACGGGCCCAAGCGCTCTTATTTT
CCGAGgtgggtaaggagggagggagggagggaaggagggaaggagggagg
ggggacgggcgggtgggtgggatagcgctgacggaaatacctctccacgt
ccatcgagtcaagtcaacggcaaactgagagcctccgccgtccgtacctc
accctcctcaccacccatcccccctctccaaccgcaaagGTGGCTGTCAT
CCGCCCCGCGTCCCCAGAGGAATCTCATGCCCTGGTTCTCGCAGCTCCAA
GCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCGCCCTACATCTTCTCC
CTCCGCGTTGCCGAGCTGACCCGCTACGAGCTCATCAGCCCTCGCGTCCG
CCTCTACGCCATTCGGCACTCCTCCTCCCCTTTCTCCCTCCCGCCCTCCT
CCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCCCAAGACCCACTTCC
CGCCTCTTTTTCCAAACCTACCCCCTCCCCCTCCTCCTCCCCTCCCACCC
TTCCTCCCTCCTTTTCATGACCCTCCCCGCTACTGTTGCTGTGGCCCTCC
TCCCGTCCTCCCCTCTCGTGCCGCCGCAGTGGGAGGAAGGGAACGAGGAG
CAGCTGGCGGCGTTCTGGAAAGAGGTGGAGATGGAGGTACTGGTGTTGAT
TGAAGgtgagggatggagggagaaagggaaggaaggagggaaggaaggga
gtgtacagaagcggtcgacgtggctggtctgcgttgcctcctccctgatt
cccagggcactgcacccgcgcacttccaagccaagcacctccacactcac
agacgggaaagccaacactctctggagccttgccgtggccactcttcttc
acccacccttcttccctccctccctccctccctccctctagGCGTGGATC
CACTGACCTCCAACTCCCTCCAGGCCAAGTTTTCCTACAAGTGGGAAGAT
GTCTGTTACGGCTCTGCCTTCGCCCCCTGCTTGTTGATGCGGCACCACGA
TGGTGGGTGTGTGCTTGACGTGGCCAAGTTCCACCAGACCCAGAGGGTGG
CGTGA
back to top

protein sequence of NO01G00320.1

>NO01G00320.1-protein ID=NO01G00320.1-protein|Name=NO01G00320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=547bp
MSAYRPLREPQFSTSSSINSLGEQNRVPCPSRHHTEERPSSPPHSPHPTG
GLQMATRNGGGGLGMPKKTQMEEEVDRQTPLLDESLNTHHHNDGMEETDE
ERGGVCSIHASTAATDAAANGAQAPIRGRSASSPPHLIPTTTSSFRARLL
PSHLHGSSTSGREVGVENSARGSNRRRSGRSRLVERHATRTGQVKGSRWN
MTRVGWGDGIQDSLESLLYDSFNTLLMAPTGYTLAFLACAYLSLVMLFAG
VYVVLSRQEECNMDIDSFLKGYLFSLETMATVGFGAKDMYFGECTAPTMI
VTLQIFVSIFVDAVFIGLIFLRFSRPHKRAQALLFSEVAVIRPASPEESH
ALVLAAPSPPSLPLSLPPSPYIFSLRVAELTRYELISPRVRLYAIRHSSS
PFSLPPSSSSSSSSSSSSSPRPTSRLFFQTYPLPLLLPSHPSSLLFMTLP
ATVAVALLPSSPLVPPQWEEGNEEQLAAFWKEVEMEVLVLIEGVDPLTSN
SLQAKFSYKWEDVCYGSAFAPCLLMRHHDGGCVLDVAKFHQTQRVA*
back to top
Synonyms
Publications