NO01G00170, NO01G00170 (gene) Nannochloropsis oceanica

Overview
NameNO01G00170
Unique NameNO01G00170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length654
Alignment locationchr1:28261..28914 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:28261..28914 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO01G00170 vs. NCBI_GenBank
Match: XP_005852576.1 (hypothetical protein NGA_0721300 [Nannochloropsis gaditana CCMP526] >EKU23255.1 hypothetical protein NGA_0721300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 95.1 bits (235), Expect = 2.800e-16
Identity = 76/189 (40.21%), Postives = 99/189 (52.38%), Query Frame = 0
Query:    1 MHRALSLLALGITLALTAAQPMLTLTSIKAVDSTSNNQDKWSMKGFLNDPDADLISTIADEGLSADLVNSDDLLVSDVTFAAAACRDLSNGRGVLCKDAGARISFKRTKRVPHEAKVKAMKNHNKTDSASSYYSVSGVFRRQQFENTISNSANLSGSLGNNQAFTDEPTLSNCRKKG--------VPGP 182
            M R LSLLALG+TLALT  Q ML+L SIK  + T  N+DKWSMKG L DP   ++S I   GL+  L++     +   +FAA  C    + +G  CK  GAR+S + +K  P +      K+HN T     Y+SVSG FRR Q +    +   L+  L      T   TL+ C  KG        VPGP
Sbjct:    1 MRRGLSLLALGLTLALTTGQ-MLSLKSIKTFERTQMNKDKWSMKGHLEDPTLAVVSGIGTNGLTVTLLDMAADTLDTASFAAGDCMVRKSSKGARCKMMGARVSIRASK--PPKG---VGKSHNST---GGYFSVSGSFRRVQLQEDPVDFP-LTAELTVPGVGTLSQTLTGCSVKGTKTRKVTCVPGP 179          
BLAST of NO01G00170 vs. NCBI_GenBank
Match: EWM20521.1 (hypothetical protein Naga_100335g8, partial [Nannochloropsis gaditana])

HSP 1 Score: 91.3 bits (225), Expect = 4.100e-15
Identity = 76/213 (35.68%), Postives = 112/213 (52.58%), Query Frame = 0
Query:    1 MHRALSLLALGITLA---LTAAQPMLTLTSIKAVDSTSNNQDKWSMKGFLNDPDADLISTIADEGLSADLVNSDDLLVSDVTFAAAACRDLSNGRGVLCKDAGARISFKRTKRVPHEAKVKAMKN-HNKT-DSASSYYSVSGVFRRQQF-ENTI----SNSANLSGSLGNNQAF--------TDEPTLSNCRKKGVPGPPSSSASKCHRIEVG 196
            M   LSLLALGITL    +T A   L L SI+AVD +  N+D W MKG +NDP    +  I   GL+ +L ++    ++ V FAA+ CR  ++GR   CK  GAR+S KR++R     K+K  K  H K+ +S   YYSV+G FR   F EN +    + +  ++GS+ ++           +   T+S C     PGPP  + +   + + G
Sbjct:    1 MRSPLSLLALGITLGSTLVTTAGQDLNLKSIRAVDRSVTNKDTWKMKGNINDPSLTFVPAIGQTGLTVELQDAATDPLNTVAFAASDCRVPAHGRRAACKIRGARVSIKRSRR----PKIKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSPLTAALRVNGSVLSDTLISCYDLARKSARSTISQCE----PGPPVPTPTWTEQTDAG 205          
BLAST of NO01G00170 vs. NCBI_GenBank
Match: EWM26484.1 (Neuraminidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 89.0 bits (219), Expect = 2.000e-14
Identity = 77/212 (36.32%), Postives = 111/212 (52.36%), Query Frame = 0
Query:    1 MHRALSLLALGITLALT---AAQPMLTLTSIKAVDSTSNNQDKWSMKGFLNDPDADLISTIADEGLSADLVNSDDLLVSDVTFAAAACRDLSNGRGVLCKDAGARISFKRTKRVPHEAKVKAMKN-HNKT-DSASSYYSVSGVFRRQQF-ENTISNSANLSGSLGNNQAFTDEPTLSNC----RKKG-------VPGPPSSSASKCHRIEVG 196
            M  ALSLL LG+T   T    A   L L SI+ VD +  N+D W MKG +NDP   ++  I   GL+ +L ++    ++ V FAA+ CR  ++GR   CK  GAR+S K ++R     KVK  K  H K+ +S   YYSV+G FR   F EN + +   L+ +L  N +   + TL++C    RK G        PGPP+ + +   +   G
Sbjct:    1 MRSALSLLVLGVTFGSTLVPTAGQDLNLKSIRTVDRSVTNKDTWKMKGNINDPSLTIVPAIGQTGLTVELQDAATDPLNTVAFAASDCRVPAHGRRATCKIRGARVSIKTSRR----PKVKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSP--LTAALRINGSVLSD-TLTSCYDLARKSGRNTISHCEPGPPAPTPTWTEQTTAG 205          
BLAST of NO01G00170 vs. NCBI_GenBank
Match: EWM26485.1 (Neuraminidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 89.0 bits (219), Expect = 2.000e-14
Identity = 77/212 (36.32%), Postives = 111/212 (52.36%), Query Frame = 0
Query:    1 MHRALSLLALGITLALT---AAQPMLTLTSIKAVDSTSNNQDKWSMKGFLNDPDADLISTIADEGLSADLVNSDDLLVSDVTFAAAACRDLSNGRGVLCKDAGARISFKRTKRVPHEAKVKAMKN-HNKT-DSASSYYSVSGVFRRQQF-ENTISNSANLSGSLGNNQAFTDEPTLSNC----RKKG-------VPGPPSSSASKCHRIEVG 196
            M  ALSLL LG+T   T    A   L L SI+ VD +  N+D W MKG +NDP   ++  I   GL+ +L ++    ++ V FAA+ CR  ++GR   CK  GAR+S K ++R     KVK  K  H K+ +S   YYSV+G FR   F EN + +   L+ +L  N +   + TL++C    RK G        PGPP+ + +   +   G
Sbjct:    1 MRSALSLLVLGVTFGSTLVPTAGQDLNLKSIRTVDRSVTNKDTWKMKGNINDPSLTIVPAIGQTGLTVELQDAATDPLNTVAFAASDCRVPAHGRRATCKIRGARVSIKTSRR----PKVKTPKTVHAKSYNSTGGYYSVTGTFRGLTFLENPVVSP--LTAALRINGSVLSD-TLTSCYDLARKSGRNTISHCEPGPPAPTPTWTEQTTAG 205          
BLAST of NO01G00170 vs. NCBI_GenBank
Match: EWM20775.1 (hypothetical protein Naga_100549g2 [Nannochloropsis gaditana])

HSP 1 Score: 83.2 bits (204), Expect = 1.100e-12
Identity = 73/198 (36.87%), Postives = 99/198 (50.00%), Query Frame = 0
Query:    1 MHRALSLLALGITLA---LTAAQPMLTLTSIKAVDSTSNNQDKWSMKGFLNDPDADLISTIADEGLSADLVNSDDLLVSDVTFAAAACRDLSNGRGVLCKDAGARISFKRTKRVPHEAKVKAMKN-HNKT-DSASSYYSVSGVFRRQQFENTISNSANLSGSLGNNQAFTDEPTLSNC----RKKG-------VPGPP 183
            M  A S LA+GIT     +T A   L L SI+AVD +  N+D W MKG ++DP   ++  IA  GL  +L +     ++ VTFAA+ CR  +NGR   CK  GAR+S K ++R     K+K  K  H KT +S   YY V+G  R   F   +  S   +    N    +D  TL++C    R  G        PGPP
Sbjct:    1 MRSAFSFLAVGITFGSSLVTTAGQDLNLKSIRAVDRSVANKDTWKMKGKIDDPSMTIVPEIAQTGLIVELQDGGSDPLNTVTFAASDCRVPTNGRRATCKIRGARVSIKSSRR----PKLKTPKTVHAKTYNSTGGYYRVTGACRGLTFLEDLVLSPLTAKLTVNGDVLSD--TLTSCYDLPRMNGRNTITHCEPGPP 192          
The following BLAST results are available for this feature:
BLAST of NO01G00170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 15
Match NameE-valueIdentityDescription
XP_005852576.12.800e-1640.21hypothetical protein NGA_0721300 [Nannochloropsis ... [more]
EWM20521.14.100e-1535.68hypothetical protein Naga_100335g8, partial [Nanno... [more]
EWM26484.12.000e-1436.32Neuraminidase, partial [Nannochloropsis gaditana][more]
EWM26485.12.000e-1436.32Neuraminidase, partial [Nannochloropsis gaditana][more]
EWM20775.11.100e-1236.87hypothetical protein Naga_100549g2 [Nannochloropsi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL007nonsL007Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR042ncniR042Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G00170.1NO01G00170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G00170.1NO01G00170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G00170 ID=NO01G00170|Name=NO01G00170|organism=Nannochloropsis oceanica|type=gene|length=654bp
ATGCATCGCGCCCTTTCTCTGCTTGCCCTCGGCATCACCCTCGCCCTGAC
AGCGGCTCAGCCGATGTTGACCCTCACCTCCATTAAGGCAGTCGACTCGA
CAAGCAACAATCAGGACAAATGGAGCATGAAGGGCTTCCTCAACGATCCT
GATGCCGATTTAATCTCGACCATCGCCGATGAGGGCTTGAGCGCGGACCT
TGTAAACAGTGACGATCTTCTTGTGAGTGATGTGACATTTGCCGCGGCTG
CTTGTAGAGACCTCAGCAACGGCAGGGGAGTCCTTTGCAAGGATGCGGGC
GCCCGTATCTCGTTCAAGAGGACGAAGAGGGTACCGCATGAGGCCAAGGT
GAAGGCGATGAAGAACCACAACAAGACGGACAGCGCTTCTTCCTACTACA
GTGTGTCGGGTGTTTTCCGCCGTCAGCAATTCGAGAACACTATCTCTAAC
TCAGCGAATCTATCAGGAAGTCTTGGCAACAACCAGGCATTTACTGACGA
GCCCACACTCTCTAACTGCAGGAAGAAGGGGGTGCCAGGACCACCAAGCT
CTTCTGCCAGTAAATGCCATCGCATTGAGGTCGGGCCTGCACTCGGCGCT
CGACTCACCGGCAAGAGACCCTCCACGTCCTGCCTCTTGTATATCTATGT
GTGA
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protein sequence of NO01G00170.1

>NO01G00170.1-protein ID=NO01G00170.1-protein|Name=NO01G00170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MHRALSLLALGITLALTAAQPMLTLTSIKAVDSTSNNQDKWSMKGFLNDP
DADLISTIADEGLSADLVNSDDLLVSDVTFAAAACRDLSNGRGVLCKDAG
ARISFKRTKRVPHEAKVKAMKNHNKTDSASSYYSVSGVFRRQQFENTISN
SANLSGSLGNNQAFTDEPTLSNCRKKGVPGPPSSSASKCHRIEVGPALGA
RLTGKRPSTSCLLYIYV*
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Synonyms
Publications