NO01G00170.1, NO01G00170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00170.1
Unique NameNO01G00170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length654
Alignment locationchr1:28261..28914 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:28261..28914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G00170.1 vs.
Match: EWM30036.1 (hypothetical protein Naga_100179g1 [Nannochloropsis gaditana])

HSP 1 Score: 109.8 bits (273), Expect = 1.100e-20
Identity = 82/218 (37.61%), Postives = 110/218 (50.46%), Query Frame = 0
Query:    1 MHRALSLLALGITLALTAAQPMLTLTSIKAVDSTSNNQDKWSMKGFLNDPDADLISTIADEGLSADLVNSDDLLVSDVTFAAAACRDLSNGRGVLCKDAGARISFKRTKRVPHEAKVKAMKNHNKTDSASSYYSVSGVFRRQQFENTISNSANLSGSLGNNQAFTDEPTLSNCRKKGVPGPPSSSASKCHRIEVGPALGARLT---GKRPSTSCLLYI 216
            M RA  LLALGITL +TA Q + TL ++K +D +   +D+WSMKG L+DP   ++  I  EGL+ +L +     +    FAA+ C+   NGRGV CK  GAR+S K ++R P  A V+   N+N T     YYS SG+FRR QF             L +   F   P         +P PPS+  S C     G     R+T   G  P T  L+ I
Sbjct:   20 MRRAFFLLALGITLVMTAGQDLFTLKNVKVIDKSKTARDQWSMKGNLDDPTMTVVPLIGQEGLTVELQDMALATLESTAFAASDCKLRRNGRGVSCKTRGARVSIKMSRR-PKGAYVQ-NSNYNST---GGYYSASGMFRRLQF-------------LQDPIVF---PLTVVLNVPSIPFPPSAMVSSCSEKIKGAGRTTRITCTPGPTPLTRGLILI 216          
The following BLAST results are available for this feature:
BLAST of NO01G00170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM30036.11.100e-2037.61hypothetical protein Naga_100179g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00170NO01G00170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00170.1NO01G00170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00170.1.cds1NO01G00170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00170.1 ID=NO01G00170.1|Name=NO01G00170.1|organism=Nannochloropsis oceanica|type=mRNA|length=654bp
ATGCATCGCGCCCTTTCTCTGCTTGCCCTCGGCATCACCCTCGCCCTGAC
AGCGGCTCAGCCGATGTTGACCCTCACCTCCATTAAGGCAGTCGACTCGA
CAAGCAACAATCAGGACAAATGGAGCATGAAGGGCTTCCTCAACGATCCT
GATGCCGATTTAATCTCGACCATCGCCGATGAGGGCTTGAGCGCGGACCT
TGTAAACAGTGACGATCTTCTTGTGAGTGATGTGACATTTGCCGCGGCTG
CTTGTAGAGACCTCAGCAACGGCAGGGGAGTCCTTTGCAAGGATGCGGGC
GCCCGTATCTCGTTCAAGAGGACGAAGAGGGTACCGCATGAGGCCAAGGT
GAAGGCGATGAAGAACCACAACAAGACGGACAGCGCTTCTTCCTACTACA
GTGTGTCGGGTGTTTTCCGCCGTCAGCAATTCGAGAACACTATCTCTAAC
TCAGCGAATCTATCAGGAAGTCTTGGCAACAACCAGGCATTTACTGACGA
GCCCACACTCTCTAACTGCAGGAAGAAGGGGGTGCCAGGACCACCAAGCT
CTTCTGCCAGTAAATGCCATCGCATTGAGGTCGGGCCTGCACTCGGCGCT
CGACTCACCGGCAAGAGACCCTCCACGTCCTGCCTCTTGTATATCTATGT
GTGA
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protein sequence of NO01G00170.1

>NO01G00170.1-protein ID=NO01G00170.1-protein|Name=NO01G00170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MHRALSLLALGITLALTAAQPMLTLTSIKAVDSTSNNQDKWSMKGFLNDP
DADLISTIADEGLSADLVNSDDLLVSDVTFAAAACRDLSNGRGVLCKDAG
ARISFKRTKRVPHEAKVKAMKNHNKTDSASSYYSVSGVFRRQQFENTISN
SANLSGSLGNNQAFTDEPTLSNCRKKGVPGPPSSSASKCHRIEVGPALGA
RLTGKRPSTSCLLYIYV*
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mRNA from alignment at chr1:28261..28914-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00170.1 ID=NO01G00170.1|Name=NO01G00170.1|organism=Nannochloropsis oceanica|type=mRNA|length=654bp|location=Sequence derived from alignment at chr1:28261..28914- (Nannochloropsis oceanica)
ATGCATCGCGCCCTTTCTCTGCTTGCCCTCGGCATCACCCTCGCCCTGAC AGCGGCTCAGCCGATGTTGACCCTCACCTCCATTAAGGCAGTCGACTCGA CAAGCAACAATCAGGACAAATGGAGCATGAAGGGCTTCCTCAACGATCCT GATGCCGATTTAATCTCGACCATCGCCGATGAGGGCTTGAGCGCGGACCT TGTAAACAGTGACGATCTTCTTGTGAGTGATGTGACATTTGCCGCGGCTG CTTGTAGAGACCTCAGCAACGGCAGGGGAGTCCTTTGCAAGGATGCGGGC GCCCGTATCTCGTTCAAGAGGACGAAGAGGGTACCGCATGAGGCCAAGGT GAAGGCGATGAAGAACCACAACAAGACGGACAGCGCTTCTTCCTACTACA GTGTGTCGGGTGTTTTCCGCCGTCAGCAATTCGAGAACACTATCTCTAAC TCAGCGAATCTATCAGGAAGTCTTGGCAACAACCAGGCATTTACTGACGA GCCCACACTCTCTAACTGCAGGAAGAAGGGGGTGCCAGGACCACCAAGCT CTTCTGCCAGTAAATGCCATCGCATTGAGGTCGGGCCTGCACTCGGCGCT CGACTCACCGGCAAGAGACCCTCCACGTCCTGCCTCTTGTATATCTATGT GTGA
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Coding sequence (CDS) from alignment at chr1:28261..28914-

>NO01G00170.1 ID=NO01G00170.1|Name=NO01G00170.1|organism=Nannochloropsis oceanica|type=CDS|length=654bp|location=Sequence derived from alignment at chr1:28261..28914- (Nannochloropsis oceanica)
ATGCATCGCGCCCTTTCTCTGCTTGCCCTCGGCATCACCCTCGCCCTGAC
AGCGGCTCAGCCGATGTTGACCCTCACCTCCATTAAGGCAGTCGACTCGA
CAAGCAACAATCAGGACAAATGGAGCATGAAGGGCTTCCTCAACGATCCT
GATGCCGATTTAATCTCGACCATCGCCGATGAGGGCTTGAGCGCGGACCT
TGTAAACAGTGACGATCTTCTTGTGAGTGATGTGACATTTGCCGCGGCTG
CTTGTAGAGACCTCAGCAACGGCAGGGGAGTCCTTTGCAAGGATGCGGGC
GCCCGTATCTCGTTCAAGAGGACGAAGAGGGTACCGCATGAGGCCAAGGT
GAAGGCGATGAAGAACCACAACAAGACGGACAGCGCTTCTTCCTACTACA
GTGTGTCGGGTGTTTTCCGCCGTCAGCAATTCGAGAACACTATCTCTAAC
TCAGCGAATCTATCAGGAAGTCTTGGCAACAACCAGGCATTTACTGACGA
GCCCACACTCTCTAACTGCAGGAAGAAGGGGGTGCCAGGACCACCAAGCT
CTTCTGCCAGTAAATGCCATCGCATTGAGGTCGGGCCTGCACTCGGCGCT
CGACTCACCGGCAAGAGACCCTCCACGTCCTGCCTCTTGTATATCTATGT
GTGA
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Synonyms
Publications