scaffold_75, scaffold_75 (supercontig) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	scaffold_75
Unique Name	scaffold_75
Type	supercontig
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	67570
Alignment location	jgi.p\|Nanoce1779_2\|409459:15112..17707 -
Alignment location	jgi.p\|Nanoce1779_2\|409459:15112..17707 -
Alignment location	CDS_11548:17519..17616 -
Alignment location	CDS_11548:17229..17376 -
Alignment location	CDS_11548:16973..17100 -
Alignment location	CDS_11548:16580..16718 -
Alignment location	CDS_11548:16365..16434 -
Alignment location	CDS_11548:16193..16269 -
Alignment location	CDS_11548:15819..16052 -
Alignment location	CDS_11548:15576..15664 -
Alignment location	CDS_11548:15412..15424 -
Alignment location	jgi.p\|Nanoce1779_2\|613478:5803..7553 -
Alignment location	jgi.p\|Nanoce1779_2\|613478:5803..7553 -
Alignment location	CDS_11546:7161..7223 -
Alignment location	CDS_11546:7040..7090 -
Alignment location	CDS_11546:6774..6887 -
Alignment location	CDS_11546:6477..6546 -
Alignment location	CDS_11546:6265..6363 -
Alignment location	CDS_11546:5835..5989 -
Alignment location	jgi.p\|Nanoce1779_2\|613487:19216..19600 +
Alignment location	jgi.p\|Nanoce1779_2\|613487:19216..19600 +
Alignment location	CDS_11549:19292..19504 +
Alignment location	jgi.p\|Nanoce1779_2\|613490:20146..21019 -
Alignment location	jgi.p\|Nanoce1779_2\|613490:20146..21019 -
Alignment location	CDS_11550:20601..20954 -
Alignment location	jgi.p\|Nanoce1779_2\|613496:27773..33670 +
Alignment location	jgi.p\|Nanoce1779_2\|613496:27773..33670 +
Alignment location	CDS_11551:27779..27877 +
Alignment location	CDS_11551:28086..28141 +
Alignment location	CDS_11551:28312..28420 +
Alignment location	CDS_11551:28558..28656 +
Alignment location	CDS_11551:28833..28925 +
Alignment location	CDS_11551:29093..29158 +
Alignment location	CDS_11551:29558..29626 +
Alignment location	CDS_11551:29807..29860 +
Alignment location	CDS_11551:30000..30104 +
Alignment location	CDS_11551:30263..30329 +
Alignment location	CDS_11551:30455..30522 +
Alignment location	CDS_11551:30818..30920 +
Alignment location	CDS_11551:31150..31267 +
Alignment location	CDS_11551:31734..31818 +
Alignment location	CDS_11551:32066..32128 +
Alignment location	CDS_11551:32323..32397 +
Alignment location	CDS_11551:32543..32629 +
Alignment location	CDS_11551:32791..32886 +
Alignment location	CDS_11551:32998..33062 +
Alignment location	CDS_11551:33184..33263 +
Alignment location	CDS_11551:33442..33551 +
Alignment location	jgi.p\|Nanoce1779_2\|613502:34459..36304 -
Alignment location	jgi.p\|Nanoce1779_2\|613502:34459..36304 -
Alignment location	CDS_11552:36199..36248 -
Alignment location	CDS_11552:35984..36050 -
Alignment location	CDS_11552:35661..35772 -
Alignment location	CDS_11552:35432..35523 -
Alignment location	CDS_11552:35135..35229 -
Alignment location	CDS_11552:34877..34949 -
Alignment location	CDS_11552:34701..34760 -
Alignment location	CDS_11552:34521..34598 -
Alignment location	jgi.p\|Nanoce1779_2\|613508:40242..40714 +
Alignment location	jgi.p\|Nanoce1779_2\|613508:40242..40714 +
Alignment location	CDS_11553:40316..40448 +
Alignment location	CDS_11553:40578..40702 +
Alignment location	jgi.p\|Nanoce1779_2\|613527:49442..53671 +
Alignment location	jgi.p\|Nanoce1779_2\|613527:49442..53671 +
Alignment location	CDS_11555:49630..49760 +
Alignment location	CDS_11555:50060..50178 +
Alignment location	CDS_11555:50296..50432 +
Alignment location	CDS_11555:50581..50751 +
Alignment location	CDS_11555:50870..50963 +
Alignment location	CDS_11555:51258..51431 +
Alignment location	CDS_11555:51557..51668 +
Alignment location	CDS_11555:51811..51918 +
Alignment location	CDS_11555:52159..52250 +
Alignment location	CDS_11555:52453..52502 +
Alignment location	CDS_11555:52659..52786 +
Alignment location	CDS_11555:53040..53160 +
Alignment location	jgi.p\|Nanoce1779_2\|675113:54697..61201 +
Alignment location	jgi.p\|Nanoce1779_2\|675113:54697..61201 +
Alignment location	CDS_11556:54697..54784 +
Alignment location	CDS_11556:55038..55304 +
Alignment location	CDS_11556:55454..55481 +
Alignment location	CDS_11556:55695..55992 +
Alignment location	CDS_11556:56266..56634 +
Alignment location	CDS_11556:56809..57022 +
Alignment location	CDS_11556:57175..57277 +
Alignment location	CDS_11556:57535..57737 +
Alignment location	CDS_11556:57831..58016 +
Alignment location	CDS_11556:58170..58575 +
Alignment location	CDS_11556:58996..59146 +
Alignment location	CDS_11556:59459..59662 +
Alignment location	jgi.p\|Nanoce1779_2\|675114:61216..66503 -
Alignment location	jgi.p\|Nanoce1779_2\|675114:61216..66503 -
Alignment location	CDS_11557:66173..66263 -
Alignment location	CDS_11557:65749..65985 -
Alignment location	CDS_11557:65504..65576 -
Alignment location	CDS_11557:65228..65283 -
Alignment location	CDS_11557:64903..65003 -
Alignment location	CDS_11557:64493..64583 -
Alignment location	CDS_11557:64119..64207 -
Alignment location	CDS_11557:63825..63944 -
Alignment location	CDS_11557:63410..63530 -
Alignment location	CDS_11557:62927..63078 -
Alignment location	CDS_11557:62324..62742 -
Alignment location	CDS_11557:61527..61569 -
Alignment location	jgi.p\|Nanoce1779_2\|409459:15412..17616 -
Alignment location	jgi.p\|Nanoce1779_2\|613478:5835..7223 -
Alignment location	jgi.p\|Nanoce1779_2\|613487:19292..19504 +
Alignment location	jgi.p\|Nanoce1779_2\|613490:20601..20954 -
Alignment location	jgi.p\|Nanoce1779_2\|613496:27779..33551 +
Alignment location	jgi.p\|Nanoce1779_2\|613502:34521..36248 -
Alignment location	jgi.p\|Nanoce1779_2\|613508:40316..40702 +
Alignment location	jgi.p\|Nanoce1779_2\|613527:49630..53160 +
Alignment location	jgi.p\|Nanoce1779_2\|675113:54697..59662 +
Alignment location	jgi.p\|Nanoce1779_2\|675114:61527..66263 -
Alignment location	ncniL097:27774..66503 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
jgi.p\|Nanoce1779_2\|409459	gene	jgi.p\|Nanoce1779_2\|409459:15112..17707 -
jgi.p\|Nanoce1779_2\|409459	mRNA	jgi.p\|Nanoce1779_2\|409459:15112..17707 -
CDS_11548	CDS	CDS_11548:17519..17616 -
CDS_11548	CDS	CDS_11548:17229..17376 -
CDS_11548	CDS	CDS_11548:16973..17100 -
CDS_11548	CDS	CDS_11548:16580..16718 -
CDS_11548	CDS	CDS_11548:16365..16434 -
CDS_11548	CDS	CDS_11548:16193..16269 -
CDS_11548	CDS	CDS_11548:15819..16052 -
CDS_11548	CDS	CDS_11548:15576..15664 -
CDS_11548	CDS	CDS_11548:15412..15424 -
jgi.p\|Nanoce1779_2\|613478	gene	jgi.p\|Nanoce1779_2\|613478:5803..7553 -
jgi.p\|Nanoce1779_2\|613478	mRNA	jgi.p\|Nanoce1779_2\|613478:5803..7553 -
CDS_11546	CDS	CDS_11546:7161..7223 -
CDS_11546	CDS	CDS_11546:7040..7090 -
CDS_11546	CDS	CDS_11546:6774..6887 -
CDS_11546	CDS	CDS_11546:6477..6546 -
CDS_11546	CDS	CDS_11546:6265..6363 -
CDS_11546	CDS	CDS_11546:5835..5989 -
jgi.p\|Nanoce1779_2\|613487	gene	jgi.p\|Nanoce1779_2\|613487:19216..19600 +
jgi.p\|Nanoce1779_2\|613487	mRNA	jgi.p\|Nanoce1779_2\|613487:19216..19600 +
CDS_11549	CDS	CDS_11549:19292..19504 +
jgi.p\|Nanoce1779_2\|613490	gene	jgi.p\|Nanoce1779_2\|613490:20146..21019 -
jgi.p\|Nanoce1779_2\|613490	mRNA	jgi.p\|Nanoce1779_2\|613490:20146..21019 -
CDS_11550	CDS	CDS_11550:20601..20954 -
jgi.p\|Nanoce1779_2\|613496	gene	jgi.p\|Nanoce1779_2\|613496:27773..33670 +
jgi.p\|Nanoce1779_2\|613496	mRNA	jgi.p\|Nanoce1779_2\|613496:27773..33670 +
CDS_11551	CDS	CDS_11551:27779..27877 +
CDS_11551	CDS	CDS_11551:28086..28141 +
CDS_11551	CDS	CDS_11551:28312..28420 +
CDS_11551	CDS	CDS_11551:28558..28656 +
CDS_11551	CDS	CDS_11551:28833..28925 +
CDS_11551	CDS	CDS_11551:29093..29158 +
CDS_11551	CDS	CDS_11551:29558..29626 +
CDS_11551	CDS	CDS_11551:29807..29860 +
CDS_11551	CDS	CDS_11551:30000..30104 +
CDS_11551	CDS	CDS_11551:30263..30329 +
CDS_11551	CDS	CDS_11551:30455..30522 +
CDS_11551	CDS	CDS_11551:30818..30920 +
CDS_11551	CDS	CDS_11551:31150..31267 +
CDS_11551	CDS	CDS_11551:31734..31818 +
CDS_11551	CDS	CDS_11551:32066..32128 +
CDS_11551	CDS	CDS_11551:32323..32397 +
CDS_11551	CDS	CDS_11551:32543..32629 +
CDS_11551	CDS	CDS_11551:32791..32886 +
CDS_11551	CDS	CDS_11551:32998..33062 +
CDS_11551	CDS	CDS_11551:33184..33263 +
CDS_11551	CDS	CDS_11551:33442..33551 +
jgi.p\|Nanoce1779_2\|613502	gene	jgi.p\|Nanoce1779_2\|613502:34459..36304 -
jgi.p\|Nanoce1779_2\|613502	mRNA	jgi.p\|Nanoce1779_2\|613502:34459..36304 -
CDS_11552	CDS	CDS_11552:36199..36248 -
CDS_11552	CDS	CDS_11552:35984..36050 -
CDS_11552	CDS	CDS_11552:35661..35772 -
CDS_11552	CDS	CDS_11552:35432..35523 -
CDS_11552	CDS	CDS_11552:35135..35229 -
CDS_11552	CDS	CDS_11552:34877..34949 -
CDS_11552	CDS	CDS_11552:34701..34760 -
CDS_11552	CDS	CDS_11552:34521..34598 -
jgi.p\|Nanoce1779_2\|613508	gene	jgi.p\|Nanoce1779_2\|613508:40242..40714 +
jgi.p\|Nanoce1779_2\|613508	mRNA	jgi.p\|Nanoce1779_2\|613508:40242..40714 +
CDS_11553	CDS	CDS_11553:40316..40448 +
CDS_11553	CDS	CDS_11553:40578..40702 +
jgi.p\|Nanoce1779_2\|613527	gene	jgi.p\|Nanoce1779_2\|613527:49442..53671 +
jgi.p\|Nanoce1779_2\|613527	mRNA	jgi.p\|Nanoce1779_2\|613527:49442..53671 +
CDS_11555	CDS	CDS_11555:49630..49760 +
CDS_11555	CDS	CDS_11555:50060..50178 +
CDS_11555	CDS	CDS_11555:50296..50432 +
CDS_11555	CDS	CDS_11555:50581..50751 +
CDS_11555	CDS	CDS_11555:50870..50963 +
CDS_11555	CDS	CDS_11555:51258..51431 +
CDS_11555	CDS	CDS_11555:51557..51668 +
CDS_11555	CDS	CDS_11555:51811..51918 +
CDS_11555	CDS	CDS_11555:52159..52250 +
CDS_11555	CDS	CDS_11555:52453..52502 +
CDS_11555	CDS	CDS_11555:52659..52786 +
CDS_11555	CDS	CDS_11555:53040..53160 +
jgi.p\|Nanoce1779_2\|675113	gene	jgi.p\|Nanoce1779_2\|675113:54697..61201 +
jgi.p\|Nanoce1779_2\|675113	mRNA	jgi.p\|Nanoce1779_2\|675113:54697..61201 +
CDS_11556	CDS	CDS_11556:54697..54784 +
CDS_11556	CDS	CDS_11556:55038..55304 +
CDS_11556	CDS	CDS_11556:55454..55481 +
CDS_11556	CDS	CDS_11556:55695..55992 +
CDS_11556	CDS	CDS_11556:56266..56634 +
CDS_11556	CDS	CDS_11556:56809..57022 +
CDS_11556	CDS	CDS_11556:57175..57277 +
CDS_11556	CDS	CDS_11556:57535..57737 +
CDS_11556	CDS	CDS_11556:57831..58016 +
CDS_11556	CDS	CDS_11556:58170..58575 +
CDS_11556	CDS	CDS_11556:58996..59146 +
CDS_11556	CDS	CDS_11556:59459..59662 +
jgi.p\|Nanoce1779_2\|675114	gene	jgi.p\|Nanoce1779_2\|675114:61216..66503 -
jgi.p\|Nanoce1779_2\|675114	mRNA	jgi.p\|Nanoce1779_2\|675114:61216..66503 -
CDS_11557	CDS	CDS_11557:66173..66263 -
CDS_11557	CDS	CDS_11557:65749..65985 -
CDS_11557	CDS	CDS_11557:65504..65576 -
CDS_11557	CDS	CDS_11557:65228..65283 -
CDS_11557	CDS	CDS_11557:64903..65003 -
CDS_11557	CDS	CDS_11557:64493..64583 -
CDS_11557	CDS	CDS_11557:64119..64207 -
CDS_11557	CDS	CDS_11557:63825..63944 -
CDS_11557	CDS	CDS_11557:63410..63530 -
CDS_11557	CDS	CDS_11557:62927..63078 -
CDS_11557	CDS	CDS_11557:62324..62742 -
CDS_11557	CDS	CDS_11557:61527..61569 -
jgi.p\|Nanoce1779_2\|409459	polypeptide	jgi.p\|Nanoce1779_2\|409459:15412..17616 -
jgi.p\|Nanoce1779_2\|613478	polypeptide	jgi.p\|Nanoce1779_2\|613478:5835..7223 -
jgi.p\|Nanoce1779_2\|613487	polypeptide	jgi.p\|Nanoce1779_2\|613487:19292..19504 +
jgi.p\|Nanoce1779_2\|613490	polypeptide	jgi.p\|Nanoce1779_2\|613490:20601..20954 -
jgi.p\|Nanoce1779_2\|613496	polypeptide	jgi.p\|Nanoce1779_2\|613496:27779..33551 +
jgi.p\|Nanoce1779_2\|613502	polypeptide	jgi.p\|Nanoce1779_2\|613502:34521..36248 -
jgi.p\|Nanoce1779_2\|613508	polypeptide	jgi.p\|Nanoce1779_2\|613508:40316..40702 +
jgi.p\|Nanoce1779_2\|613527	polypeptide	jgi.p\|Nanoce1779_2\|613527:49630..53160 +
jgi.p\|Nanoce1779_2\|675113	polypeptide	jgi.p\|Nanoce1779_2\|675113:54697..59662 +
jgi.p\|Nanoce1779_2\|675114	polypeptide	jgi.p\|Nanoce1779_2\|675114:61527..66263 -
ncniL097	syntenic_region	ncniL097:27774..66503 +

Analyses

This supercontig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gennome assembly for N. oceanica CCMP1779	2018-02-01

Annotated Terms

Homology

Relationships

Sequences

Synonyms

Publications