jgi.p|Nanoce1779_2|613508, mRNA_11553 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613508
Unique NamemRNA_11553
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length344
Alignment locationscaffold_75:40242..40714 +

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Properties
Property NameValue
TranscriptId613594
TrackFilteredModels2
ProteinId613508
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_75supercontigscaffold_75:40242..40714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613508gene_11553Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613508mRNA_11553-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11553CDS_11553Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11553 ID=mRNA_11553|Name=jgi.p|Nanoce1779_2|613508|organism=Nannochloropsis oceanica|type=mRNA|length=344bp
CAGGCGCAGACCGTAGCCACCGCCGCAGCAGTAGGCTGTCACCCCCTCCC
CTCCCTTCCTCCCTGCCTCCTTCCATGAGTAGCAACGGCGAGGACAATAT
CCAGCCTCATCCATACCCCCACCACGAGCCGGAGGAGGGAAGTGAGTGCT
CAGTGTGCATGGACGACTTGGACAGTGGGAATTATGCAGAATACAGGGCA
GGCGCAGACATGCCCTGGCTTCCCTCTCCTTACTGCGTAACTTGCATCGA
GGTTATCCTCAAACGGTACCTCTCCACCCTACCTCCTTCCAACCCTCTCT
CCGTCTCCCTTTTCTTCCGTATGGGCCCTTAATTTGATTCATCA
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protein sequence of jgi.p|Nanoce1779_2|613508

>mRNA_11553-protein ID=mRNA_11553-protein|Name=jgi.p|Nanoce1779_2|613508|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MSSNGEDNIQPHPYPHHEPEEGSECSVCMDDLDSGNYAEYRAGADMPWLP
SPYCVTCIEVILKRYLSTLPPSNPLSVSLFFRMGP*
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mRNA from alignment at scaffold_75:40242..40714+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11553 ID=mRNA_11553|Name=jgi.p|Nanoce1779_2|613508|organism=Nannochloropsis oceanica|type=mRNA|length=473bp|location=Sequence derived from alignment at scaffold_75:40242..40714+ (Nannochloropsis oceanica)
CAGGCGCAGACCGTAGCCACCGCCGCAGCAGTAGGCTGTCACCCCCTCCC
CTCCCTTCCTCCCTGCCTCCTTCCATGAGTAGCAACGGCGAGGACAATAT
CCAGCCTCATCCATACCCCCACCACGAGCCGGAGGAGGGAAGTGAGTGCT
CAGTGTGCATGGACGACTTGGACAGTGGGAATTATGCAGAATACAGGGCA
GGCGCAGGTAGGTAGGGAGGGAGGGGTGATCGTACCAATAATGTACAGAG
AGAACACGTCTAATAAGCGCTCTGTAGCCGACTGATCCCTCCCTCCTTCT
CTCCCATACTCCCTACCTCCCTCTTTCTTTTCGCAGACATGCCCTGGCTT
CCCTCTCCTTACTGCGTAACTTGCATCGAGGTTATCCTCAAACGGTACCT
CTCCACCCTACCTCCTTCCAACCCTCTCTCCGTCTCCCTTTTCTTCCGTA
TGGGCCCTTAATTTGATTCATCA
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Coding sequence (CDS) from alignment at scaffold_75:40242..40714+

>mRNA_11553 ID=mRNA_11553|Name=jgi.p|Nanoce1779_2|613508|organism=Nannochloropsis oceanica|type=CDS|length=516bp|location=Sequence derived from alignment at scaffold_75:40242..40714+ (Nannochloropsis oceanica)
ATGAGTAGCAACGGCGAGGACAATATCCAGCCTCATCCATACCCCCACCA
CGAGCCGGAGGAGGGAAGTGAGTGCTCAGTGTGCATGGACGACTTGGACA
GTGGGAATTATGCAGAATACAGGGCAGGCGCAGACATGCCCTGGCTTCCC
TCTCCTTACTGCGTAACTTGCATCGAGGTTATCCTCAAACGGTACCTCTC
CACCCTACCTCCTTCCAACCCTCTCTCCGTCTCCCTTTTCTTCCGTATGG
GCCCTTAAATGAGTAGCAACGGCGAGGACAATATCCAGCCTCATCCATAC
CCCCACCACGAGCCGGAGGAGGGAAGTGAGTGCTCAGTGTGCATGGACGA
CTTGGACAGTGGGAATTATGCAGAATACAGGGCAGGCGCAGACATGCCCT
GGCTTCCCTCTCCTTACTGCGTAACTTGCATCGAGGTTATCCTCAAACGG
TACCTCTCCACCCTACCTCCTTCCAACCCTCTCTCCGTCTCCCTTTTCTT
CCGTATGGGCCCTTAA
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Synonyms
Publications