jgi.p|Nanoce1779_2|613490, mRNA_11550 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|613490
Unique NamemRNA_11550
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length672
Alignment locationscaffold_75:20146..21019 -

Link to JBrowse

Properties
Property NameValue
TranscriptId613576
TrackFilteredModels2
ProteinId613490
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_75supercontigscaffold_75:20146..21019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613490gene_11550Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613490mRNA_11550-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11550CDS_11550Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11550 ID=mRNA_11550|Name=jgi.p|Nanoce1779_2|613490|organism=Nannochloropsis oceanica|type=mRNA|length=672bp
GAGCGAGCAACCGAAAGCAGCGCAAACCTGAGCAGAAAGAAAAAAAAGTG
TGACTTGTTATAAGAATGGGGCATTTTTTCCTCTCTACCCGTCTCGCTCT
GACGAGTGTGACCCCTGCTTTACATCTGACTCTCAATGATCCAATCACTG
CCCCCACTCATGTTCCACTCAAGACAGACAGGAAGAAGAAGACCAAGACC
GAGACTCACTCACGCATGTGTAAAATCATATCCCTTTCGTGTCTCCCTTC
ACACCCAACACCATCAAACCACCGTCACAGCCACTCATGGCCGATCATTT
TTTATCCTAGCAGACCAAATCAGTCGACCAATAAGGAGCAAGCCAAGACT
ATCGTCATTTGGGTGGAGCCGAGAGCTTACCCCCTGCCCTCTAGGCAGCC
ATCATCTCTCGCGCCGTGAGCCCTGAAGAAGGAGGAACAAGGGTAATAGG
GGGGTGGCGAGTCTCAGCGCCGCGCCTGGCGCAAATTTGTCCTCCCTCCT
TTACTAAGGGTGTGAAAGCCCACAACCACACGTGACCACAGGCTTGAAGG
AGGTGTCGGTATTTATCCAGCACTAGGATGACCGGTCTATCTTCCCCTTC
CTCCTCCTCTTCCTCGGCCTCCTCCCCCGCCACTTCCCCTCCGCCGCAAG
CTCCTCCAGCTGGCAATGCTAC
back to top

protein sequence of jgi.p|Nanoce1779_2|613490

>mRNA_11550-protein ID=mRNA_11550-protein|Name=jgi.p|Nanoce1779_2|613490|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MGHFFLSTRLALTSVTPALHLTLNDPITAPTHVPLKTDRKKKTKTETHSR
MCKIISLSCLPSHPTPSNHRHSHSWPIIFYPSRPNQSTNKEQAKTIVIWV
EPRAYPLPSRQPSSLAP*
back to top

mRNA from alignment at scaffold_75:20146..21019-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11550 ID=mRNA_11550|Name=jgi.p|Nanoce1779_2|613490|organism=Nannochloropsis oceanica|type=mRNA|length=874bp|location=Sequence derived from alignment at scaffold_75:20146..21019- (Nannochloropsis oceanica)
GAGCGAGCAACCGAAAGCAGCGCAAACCTGAGCAGAAAGAAAAAAAAGTG
TGACTTGTTATAAGAATGGGGCATTTTTTCCTCTCTACCCGTCTCGCTCT
GACGAGTGTGACCCCTGCTTTACATCTGACTCTCAATGATCCAATCACTG
CCCCCACTCATGTTCCACTCAAGACAGACAGGAAGAAGAAGACCAAGACC
GAGACTCACTCACGCATGTGTAAAATCATATCCCTTTCGTGTCTCCCTTC
ACACCCAACACCATCAAACCACCGTCACAGCCACTCATGGCCGATCATTT
TTTATCCTAGCAGACCAAATCAGTCGACCAATAAGGAGCAAGCCAAGACT
ATCGTCATTTGGGTGGAGCCGAGAGCTTACCCCCTGCCCTCTAGGCAGCC
ATCATCTCTCGCGCCGTGAGCCCTGAAGAAGGAGGAACAAGGGTAATAGG
GGGGTGGCGAGTCTCAGCGCCGCGCCTGGCGCAAATTTGTCCTCCCTCCT
TTACTAAGGGTGTGAAAGCCCACAACCACACGTGACCACAGGTGAGAAGA
GAGAAATAAGGCACGTGCAGGCACAATTCCCGGCCCTGAATTTGTTCTTT
TCCTCTTCTTCGTGGTGTGGTCGTCGATGCGTTCCATCCCACCTACCCCT
CCCTCCTTATTTCCCTCGCTCCCTCCCTCCTGATCTCTTCCCCCCCTCCC
CCCCCTCCCACCCCTTTCTCCCTCTCTACACTCCATATCATAGGCTTGAA
GGAGGTGTCGGTATTTATCCAGCACTAGGATGACCGGTCTATCTTCCCCT
TCCTCCTCCTCTTCCTCGGCCTCCTCCCCCGCCACTTCCCCTCCGCCGCA
AGCTCCTCCAGCTGGCAATGCTAC
back to top

Coding sequence (CDS) from alignment at scaffold_75:20146..21019-

>mRNA_11550 ID=mRNA_11550|Name=jgi.p|Nanoce1779_2|613490|organism=Nannochloropsis oceanica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_75:20146..21019- (Nannochloropsis oceanica)
ATGGGGCATTTTTTCCTCTCTACCCGTCTCGCTCTGACGAGTGTGACCCC
TGCTTTACATCTGACTCTCAATGATCCAATCACTGCCCCCACTCATGTTC
CACTCAAGACAGACAGGAAGAAGAAGACCAAGACCGAGACTCACTCACGC
ATGTGTAAAATCATATCCCTTTCGTGTCTCCCTTCACACCCAACACCATC
AAACCACCGTCACAGCCACTCATGGCCGATCATTTTTTATCCTAGCAGAC
CAAATCAGTCGACCAATAAGGAGCAAGCCAAGACTATCGTCATTTGGGTG
GAGCCGAGAGCTTACCCCCTGCCCTCTAGGCAGCCATCATCTCTCGCGCC
GTGA
back to top
Synonyms
Publications