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Properties
| Property Name | Value |
|---|
| TranscriptId | 613588 |
| Track | FilteredModels2 |
| ProteinId | 613502 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_75 | supercontig | scaffold_75:34459..36304 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_11552 ID=mRNA_11552|Name=jgi.p|Nanoce1779_2|613502|organism=Nannochloropsis oceanica|type=mRNA|length=745bp
ACAGCCTCTTCCTCGCCAATCTCCCCCTTTCATCCTCTTTCCCTCAGTAA
GCAATCATGGTCGGCATCCACAAGACGCTTCTCGTGGCTGCGGTAACGAT
GGCCAGTGTCAGTGCCTTTGTGCCCCCAGCGCCCGCTGCTCCCCGCACCC
GCGGCGTGATGAAAATGGGCTTGGACGGCATGATCGGCTCTTCGGCCCCC
TTCAAGAATTTCGATCCTCTCGGCTTTGCCGCCAAGGCCGACCAGAAGAC
GCTCAACAAGTACCGTGAGTCGGAGCTCAAGCACGGCCGCGTGGCCATGC
TGGCGGTGCTCGGATGGATCGTGCAGGAGTTCTGGCACCCGCTCTACGAC
GGCAAGCTCTCCTCCAATCCCCTCAAGGCCCTGACGGAGGTGCCGCTCAT
CGGGTGGGCGCAGATCTTCGTGGCCATCAACGTCATCGAATACCTCCAGA
ACAAGATCAAGGAGCTCCCGGGATACCGTCCTGGCGACTATCTTGGCACG
TGGGAGTGGGTCGAACAGTCCGATGAGGGCTGGGATAGCTACCAGACGAA
GGAGCTCAACAACGGTCGTTTGGCCATGGTCGCCATCGCCGGCCTCATCG
TCCAGGACTTGATTACGGGCCAGGCCGCGCTGGAGCAGATTACGGCGGGG
AACACGGGCGTCTTTTCGGGCCTCGGGAAGTAAGAAGAAGGAAACGATGA
TGAATGAATAGGAAGGAGGAAAGGAGGGCGGGAGGGAGGGAGGAG back to topprotein sequence of jgi.p|Nanoce1779_2|613502 >mRNA_11552-protein ID=mRNA_11552-protein|Name=jgi.p|Nanoce1779_2|613502|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MVGIHKTLLVAAVTMASVSAFVPPAPAAPRTRGVMKMGLDGMIGSSAPFK
NFDPLGFAAKADQKTLNKYRESELKHGRVAMLAVLGWIVQEFWHPLYDGK
LSSNPLKALTEVPLIGWAQIFVAINVIEYLQNKIKELPGYRPGDYLGTWE
WVEQSDEGWDSYQTKELNNGRLAMVAIAGLIVQDLITGQAALEQITAGNT
GVFSGLGK* back to topmRNA from alignment at scaffold_75:34459..36304- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_11552 ID=mRNA_11552|Name=jgi.p|Nanoce1779_2|613502|organism=Nannochloropsis oceanica|type=mRNA|length=1846bp|location=Sequence derived from alignment at scaffold_75:34459..36304- (Nannochloropsis oceanica)
ACAGCCTCTTCCTCGCCAATCTCCCCCTTTCATCCTCTTTCCCTCAGTAA
GCAATCATGGTCGGCATCCACAAGACGCTTCTCGTGGCTGCGGTAACGAT
GGCCAGGTATGCCTTCAATTTATCCCTCCTTCCTGCCCTCCTTCTCGCCC
TCCTTCGTCCCGCTGAAGCGAGCGCCAGGATGACAAGAAGAATCAATGCG
TGCTTCCACTCATCCCATTTTCCTTACTTCCCTTCCTCCCTCCGTCCTCC
TTAGTGTCAGTGCCTTTGTGCCCCCAGCGCCCGCTGCTCCCCGCACCCGC
GGCGTGATGAAAATGGGCTTGGTAGGTTAGAATGAAAGGGAAGGAGGGAA
GAAGGGAGCGAAGGAGGAAGAGGGAAGGCTCAAGTAAAGCTGAGGAGAAT
GCAAATTTAGAATGAAGACGACTGAGAAAGGGAGGGAGAGGAAACGAGGG
AGGATTGGAAGGTGACTTTCAAGATGCCGTTTGTGTCGTCCACCAGCCGC
CTGACCACCCCCTCCCCCCCTCCCTCCCTCAGGACGGCATGATCGGCTCT
TCGGCCCCCTTCAAGAATTTCGATCCTCTCGGCTTTGCCGCCAAGGCCGA
CCAGAAGACGCTCAACAAGTACCGTGAGTCGGAGCTCAAGCACGGTACGT
CCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCCACTCCACTCACCCTC
CCGCTCCCCCTCTCTCTTCGCGTCGACTCCACTTACCCACACTCCCTCCT
TCCTTTCCTCCCTCCCTCCCTCCCTCCCCAGGCCGCGTGGCCATGCTGGC
GGTGCTCGGATGGATCGTGCAGGAGTTCTGGCACCCGCTCTACGACGGCA
AGCTCTCCTCCAATCCCCTCAAGGTATCAATGTGCCCTGGCCTGCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCTCTCCTTCCCTTTTCCTCCCTACCATT
TCTCCTCGAACCTCCTGACAGTGCATGGCCTTCCCTCCCTCCCTCCCTCC
CTCCCTCCCCCTCCTTTCCTGTTCTTCCCTCCTCCCTGACCACTCCCTCC
CTCCCTCCCTCCCTCCCTACCCCAGGCCCTGACGGAGGTGCCGCTCATCG
GGTGGGCGCAGATCTTCGTGGCCATCAACGTCATCGAATACCTCCAGAAC
AAGATCAAGGAGCTCCCGGGGTACGTCCCTTCCTCCCTCCCTCCCTCCCT
CCCTCCTTCCTTCCTTCCTTCCTTCCCGTGGGTTTATGGACTTACCATGC
CCGGATATTGATGGTGTTCCCTTCCTCCCTCCCTCCCTTGAGCTCCATTG
AAACCTCACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCC
CTCAGATACCGTCCTGGCGACTATCTTGGCACGTGGGAGTGGGTCGAACA
GTCCGATGAGGGCTGGGATAGCTACCAGGTGGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGGATGCCATCACTCCATATTTTCAGATCGAT
TTACTCACCCCTCCTTCCTCCTCCCTTCCTTCCTTCCCCTCTAGACGAAG
GAGCTCAACAACGGTCGTTTGGCCATGGTCGCCATCGCCGGCCTCATCGT
CCAGGTGCGCCCTGCCTCCTTCCCTCCCTCCCTCCCTCCCTCCTTATCCT
GTCCTTTGTCCCACTCCCCCCTCACTCTACACCTCCCTCCCTCTCTCTCT
CGCTAGGACTTGATTACGGGCCAGGCCGCGCTGGAGCAGATTACGGCGGG
GAACACGGGCGTCTTTTCGGGCCTCGGGAAGTAAGAAGAAGGAAACGATG
ATGAATGAATAGGAAGGAGGAAAGGAGGGCGGGAGGGAGGGAGGAG back to topCoding sequence (CDS) from alignment at scaffold_75:34459..36304- >mRNA_11552 ID=mRNA_11552|Name=jgi.p|Nanoce1779_2|613502|organism=Nannochloropsis oceanica|type=CDS|length=5016bp|location=Sequence derived from alignment at scaffold_75:34459..36304- (Nannochloropsis oceanica)
GACTTGATTACGGGCCAGGCCGCGCTGGAGCAGATTACGGCGGGGAACAC
GGGCGTCTTTTCGGGCCTCGGGAAGTAAACGAAGGAGCTCAACAACGGTC
GTTTGGCCATGGTCGCCATCGCCGGCCTCATCGTCCAGATACCGTCCTGG
CGACTATCTTGGCACGTGGGAGTGGGTCGAACAGTCCGATGAGGGCTGGG
ATAGCTACCAGGCCCTGACGGAGGTGCCGCTCATCGGGTGGGCGCAGATC
TTCGTGGCCATCAACGTCATCGAATACCTCCAGAACAAGATCAAGGAGCT
CCCGGGGCCGCGTGGCCATGCTGGCGGTGCTCGGATGGATCGTGCAGGAG
TTCTGGCACCCGCTCTACGACGGCAAGCTCTCCTCCAATCCCCTCAAGGA
CGGCATGATCGGCTCTTCGGCCCCCTTCAAGAATTTCGATCCTCTCGGCT
TTGCCGCCAAGGCCGACCAGAAGACGCTCAACAAGTACCGTGAGTCGGAG
CTCAAGCACGTGTCAGTGCCTTTGTGCCCCCAGCGCCCGCTGCTCCCCGC
ACCCGCGGCGTGATGAAAATGGGCTTGATGGTCGGCATCCACAAGACGCT
TCTCGTGGCTGCGGTAACGATGGCCAGGACTTGATTACGGGCCAGGCCGC
GCTGGAGCAGATTACGGCGGGGAACACGGGCGTCTTTTCGGGCCTCGGGA
AGTAAACGAAGGAGCTCAACAACGGTCGTTTGGCCATGGTCGCCATCGCC
GGCCTCATCGTCCAGATACCGTCCTGGCGACTATCTTGGCACGTGGGAGT
GGGTCGAACAGTCCGATGAGGGCTGGGATAGCTACCAGGCCCTGACGGAG
GTGCCGCTCATCGGGTGGGCGCAGATCTTCGTGGCCATCAACGTCATCGA
ATACCTCCAGAACAAGATCAAGGAGCTCCCGGGGCCGCGTGGCCATGCTG
GCGGTGCTCGGATGGATCGTGCAGGAGTTCTGGCACCCGCTCTACGACGG
CAAGCTCTCCTCCAATCCCCTCAAGGACGGCATGATCGGCTCTTCGGCCC
CCTTCAAGAATTTCGATCCTCTCGGCTTTGCCGCCAAGGCCGACCAGAAG
ACGCTCAACAAGTACCGTGAGTCGGAGCTCAAGCACGTGTCAGTGCCTTT
GTGCCCCCAGCGCCCGCTGCTCCCCGCACCCGCGGCGTGATGAAAATGGG
CTTGATGGTCGGCATCCACAAGACGCTTCTCGTGGCTGCGGTAACGATGG
CCAGGACTTGATTACGGGCCAGGCCGCGCTGGAGCAGATTACGGCGGGGA
ACACGGGCGTCTTTTCGGGCCTCGGGAAGTAAACGAAGGAGCTCAACAAC
GGTCGTTTGGCCATGGTCGCCATCGCCGGCCTCATCGTCCAGATACCGTC
CTGGCGACTATCTTGGCACGTGGGAGTGGGTCGAACAGTCCGATGAGGGC
TGGGATAGCTACCAGGCCCTGACGGAGGTGCCGCTCATCGGGTGGGCGCA
GATCTTCGTGGCCATCAACGTCATCGAATACCTCCAGAACAAGATCAAGG
AGCTCCCGGGGCCGCGTGGCCATGCTGGCGGTGCTCGGATGGATCGTGCA
GGAGTTCTGGCACCCGCTCTACGACGGCAAGCTCTCCTCCAATCCCCTCA
AGGACGGCATGATCGGCTCTTCGGCCCCCTTCAAGAATTTCGATCCTCTC
GGCTTTGCCGCCAAGGCCGACCAGAAGACGCTCAACAAGTACCGTGAGTC
GGAGCTCAAGCACGTGTCAGTGCCTTTGTGCCCCCAGCGCCCGCTGCTCC
CCGCACCCGCGGCGTGATGAAAATGGGCTTGATGGTCGGCATCCACAAGA
CGCTTCTCGTGGCTGCGGTAACGATGGCCAGGACTTGATTACGGGCCAGG
CCGCGCTGGAGCAGATTACGGCGGGGAACACGGGCGTCTTTTCGGGCCTC
GGGAAGTAAACGAAGGAGCTCAACAACGGTCGTTTGGCCATGGTCGCCAT
CGCCGGCCTCATCGTCCAGATACCGTCCTGGCGACTATCTTGGCACGTGG
GAGTGGGTCGAACAGTCCGATGAGGGCTGGGATAGCTACCAGGCCCTGAC
GGAGGTGCCGCTCATCGGGTGGGCGCAGATCTTCGTGGCCATCAACGTCA
TCGAATACCTCCAGAACAAGATCAAGGAGCTCCCGGGGCCGCGTGGCCAT
GCTGGCGGTGCTCGGATGGATCGTGCAGGAGTTCTGGCACCCGCTCTACG
ACGGCAAGCTCTCCTCCAATCCCCTCAAGGACGGCATGATCGGCTCTTCG
GCCCCCTTCAAGAATTTCGATCCTCTCGGCTTTGCCGCCAAGGCCGACCA
GAAGACGCTCAACAAGTACCGTGAGTCGGAGCTCAAGCACGTGTCAGTGC
CTTTGTGCCCCCAGCGCCCGCTGCTCCCCGCACCCGCGGCGTGATGAAAA
TGGGCTTGATGGTCGGCATCCACAAGACGCTTCTCGTGGCTGCGGTAACG
ATGGCCAGGACTTGATTACGGGCCAGGCCGCGCTGGAGCAGATTACGGCG
GGGAACACGGGCGTCTTTTCGGGCCTCGGGAAGTAAACGAAGGAGCTCAA
CAACGGTCGTTTGGCCATGGTCGCCATCGCCGGCCTCATCGTCCAGATAC
CGTCCTGGCGACTATCTTGGCACGTGGGAGTGGGTCGAACAGTCCGATGA
GGGCTGGGATAGCTACCAGGCCCTGACGGAGGTGCCGCTCATCGGGTGGG
CGCAGATCTTCGTGGCCATCAACGTCATCGAATACCTCCAGAACAAGATC
AAGGAGCTCCCGGGGCCGCGTGGCCATGCTGGCGGTGCTCGGATGGATCG
TGCAGGAGTTCTGGCACCCGCTCTACGACGGCAAGCTCTCCTCCAATCCC
CTCAAGGACGGCATGATCGGCTCTTCGGCCCCCTTCAAGAATTTCGATCC
TCTCGGCTTTGCCGCCAAGGCCGACCAGAAGACGCTCAACAAGTACCGTG
AGTCGGAGCTCAAGCACGTGTCAGTGCCTTTGTGCCCCCAGCGCCCGCTG
CTCCCCGCACCCGCGGCGTGATGAAAATGGGCTTGATGGTCGGCATCCAC
AAGACGCTTCTCGTGGCTGCGGTAACGATGGCCAGGACTTGATTACGGGC
CAGGCCGCGCTGGAGCAGATTACGGCGGGGAACACGGGCGTCTTTTCGGG
CCTCGGGAAGTAAACGAAGGAGCTCAACAACGGTCGTTTGGCCATGGTCG
CCATCGCCGGCCTCATCGTCCAGATACCGTCCTGGCGACTATCTTGGCAC
GTGGGAGTGGGTCGAACAGTCCGATGAGGGCTGGGATAGCTACCAGGCCC
TGACGGAGGTGCCGCTCATCGGGTGGGCGCAGATCTTCGTGGCCATCAAC
GTCATCGAATACCTCCAGAACAAGATCAAGGAGCTCCCGGGGCCGCGTGG
CCATGCTGGCGGTGCTCGGATGGATCGTGCAGGAGTTCTGGCACCCGCTC
TACGACGGCAAGCTCTCCTCCAATCCCCTCAAGGACGGCATGATCGGCTC
TTCGGCCCCCTTCAAGAATTTCGATCCTCTCGGCTTTGCCGCCAAGGCCG
ACCAGAAGACGCTCAACAAGTACCGTGAGTCGGAGCTCAAGCACGTGTCA
GTGCCTTTGTGCCCCCAGCGCCCGCTGCTCCCCGCACCCGCGGCGTGATG
AAAATGGGCTTGATGGTCGGCATCCACAAGACGCTTCTCGTGGCTGCGGT
AACGATGGCCAGGACTTGATTACGGGCCAGGCCGCGCTGGAGCAGATTAC
GGCGGGGAACACGGGCGTCTTTTCGGGCCTCGGGAAGTAAACGAAGGAGC
TCAACAACGGTCGTTTGGCCATGGTCGCCATCGCCGGCCTCATCGTCCAG
ATACCGTCCTGGCGACTATCTTGGCACGTGGGAGTGGGTCGAACAGTCCG
ATGAGGGCTGGGATAGCTACCAGGCCCTGACGGAGGTGCCGCTCATCGGG
TGGGCGCAGATCTTCGTGGCCATCAACGTCATCGAATACCTCCAGAACAA
GATCAAGGAGCTCCCGGGGCCGCGTGGCCATGCTGGCGGTGCTCGGATGG
ATCGTGCAGGAGTTCTGGCACCCGCTCTACGACGGCAAGCTCTCCTCCAA
TCCCCTCAAGGACGGCATGATCGGCTCTTCGGCCCCCTTCAAGAATTTCG
ATCCTCTCGGCTTTGCCGCCAAGGCCGACCAGAAGACGCTCAACAAGTAC
CGTGAGTCGGAGCTCAAGCACGTGTCAGTGCCTTTGTGCCCCCAGCGCCC
GCTGCTCCCCGCACCCGCGGCGTGATGAAAATGGGCTTGATGGTCGGCAT
CCACAAGACGCTTCTCGTGGCTGCGGTAACGATGGCCAGGACTTGATTAC
GGGCCAGGCCGCGCTGGAGCAGATTACGGCGGGGAACACGGGCGTCTTTT
CGGGCCTCGGGAAGTAAACGAAGGAGCTCAACAACGGTCGTTTGGCCATG
GTCGCCATCGCCGGCCTCATCGTCCAGATACCGTCCTGGCGACTATCTTG
GCACGTGGGAGTGGGTCGAACAGTCCGATGAGGGCTGGGATAGCTACCAG
GCCCTGACGGAGGTGCCGCTCATCGGGTGGGCGCAGATCTTCGTGGCCAT
CAACGTCATCGAATACCTCCAGAACAAGATCAAGGAGCTCCCGGGGCCGC
GTGGCCATGCTGGCGGTGCTCGGATGGATCGTGCAGGAGTTCTGGCACCC
GCTCTACGACGGCAAGCTCTCCTCCAATCCCCTCAAGGACGGCATGATCG
GCTCTTCGGCCCCCTTCAAGAATTTCGATCCTCTCGGCTTTGCCGCCAAG
GCCGACCAGAAGACGCTCAACAAGTACCGTGAGTCGGAGCTCAAGCACGT
GTCAGTGCCTTTGTGCCCCCAGCGCCCGCTGCTCCCCGCACCCGCGGCGT
GATGAAAATGGGCTTGATGGTCGGCATCCACAAGACGCTTCTCGTGGCTG
CGGTAACGATGGCCAG back to top
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