scaffold_91, scaffold_91 (supercontig) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	scaffold_91
Unique Name	scaffold_91
Type	supercontig
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	49286
Alignment location	jgi.p\|Nanoce1779_2\|448311:12620..14872 +
Alignment location	jgi.p\|Nanoce1779_2\|448311:12620..14872 +
Alignment location	CDS_11640:13017..13165 +
Alignment location	CDS_11640:13323..13455 +
Alignment location	CDS_11640:13610..13707 +
Alignment location	CDS_11640:13819..14013 +
Alignment location	CDS_11640:14110..14220 +
Alignment location	CDS_11640:14391..14486 +
Alignment location	CDS_11640:14695..14812 +
Alignment location	jgi.p\|Nanoce1779_2\|448644:2714..5630 +
Alignment location	jgi.p\|Nanoce1779_2\|448644:2714..5630 +
Alignment location	CDS_11637:2911..2940 +
Alignment location	CDS_11637:3208..3288 +
Alignment location	CDS_11637:3527..3798 +
Alignment location	CDS_11637:4023..4104 +
Alignment location	CDS_11637:4275..4376 +
Alignment location	CDS_11637:4544..4600 +
Alignment location	CDS_11637:4702..5190 +
Alignment location	jgi.p\|Nanoce1779_2\|448783:30472..33502 +
Alignment location	jgi.p\|Nanoce1779_2\|448783:30472..33502 +
Alignment location	CDS_11644:30697..30716 +
Alignment location	CDS_11644:30837..30952 +
Alignment location	CDS_11644:31225..31382 +
Alignment location	CDS_11644:31672..32710 +
Alignment location	CDS_11644:32864..33270 +
Alignment location	jgi.p\|Nanoce1779_2\|448861:34521..36586 +
Alignment location	jgi.p\|Nanoce1779_2\|448861:34521..36586 +
Alignment location	CDS_11645:34775..35063 +
Alignment location	CDS_11645:35247..35353 +
Alignment location	CDS_11645:35448..35501 +
Alignment location	CDS_11645:35629..35850 +
Alignment location	CDS_11645:35928..36044 +
Alignment location	CDS_11645:36118..36156 +
Alignment location	jgi.p\|Nanoce1779_2\|449010:43253..44077 +
Alignment location	jgi.p\|Nanoce1779_2\|449010:43253..44077 +
Alignment location	CDS_11647:43368..44012 +
Alignment location	jgi.p\|Nanoce1779_2\|570301:15673..21230 -
Alignment location	jgi.p\|Nanoce1779_2\|570301:15673..21230 -
Alignment location	CDS_11641:20958..21230 -
Alignment location	CDS_11641:19298..20798 -
Alignment location	CDS_11641:18090..18589 -
Alignment location	CDS_11641:15673..17949 -
Alignment location	jgi.p\|Nanoce1779_2\|614737:101..2270 +
Alignment location	jgi.p\|Nanoce1779_2\|614737:101..2270 +
Alignment location	CDS_11636:101..565 +
Alignment location	CDS_11636:710..1042 +
Alignment location	CDS_11636:1142..1243 +
Alignment location	CDS_11636:1364..1445 +
Alignment location	CDS_11636:1622..2059 +
Alignment location	CDS_11636:2166..2230 +
Alignment location	jgi.p\|Nanoce1779_2\|614746:7958..8437 -
Alignment location	jgi.p\|Nanoce1779_2\|614746:7958..8437 -
Alignment location	CDS_11638:8022..8252 -
Alignment location	jgi.p\|Nanoce1779_2\|614748:8666..11779 -
Alignment location	jgi.p\|Nanoce1779_2\|614748:8666..11779 -
Alignment location	CDS_11639:11648..11751 -
Alignment location	CDS_11639:11181..11346 -
Alignment location	CDS_11639:11005..11088 -
Alignment location	CDS_11639:10691..10847 -
Alignment location	CDS_11639:10350..10497 -
Alignment location	CDS_11639:9940..10042 -
Alignment location	CDS_11639:9741..9817 -
Alignment location	CDS_11639:9392..9488 -
Alignment location	CDS_11639:9066..9200 -
Alignment location	CDS_11639:8769..8909 -
Alignment location	jgi.p\|Nanoce1779_2\|614760:24011..25134 +
Alignment location	jgi.p\|Nanoce1779_2\|614760:24011..25134 +
Alignment location	CDS_11642:24355..25116 +
Alignment location	jgi.p\|Nanoce1779_2\|614762:25321..27818 -
Alignment location	jgi.p\|Nanoce1779_2\|614762:25321..27818 -
Alignment location	CDS_11643:27356..27631 -
Alignment location	CDS_11643:26602..27156 -
Alignment location	jgi.p\|Nanoce1779_2\|614801:45540..48766 +
Alignment location	jgi.p\|Nanoce1779_2\|614801:45540..48766 +
Alignment location	CDS_11648:45912..46691 +
Alignment location	CDS_11648:46880..47668 +
Alignment location	jgi.p\|Nanoce1779_2\|643865:38924..42314 -
Alignment location	jgi.p\|Nanoce1779_2\|643865:38924..42314 -
Alignment location	CDS_11646:41895..42314 -
Alignment location	CDS_11646:41584..41688 -
Alignment location	CDS_11646:41385..41450 -
Alignment location	CDS_11646:41191..41269 -
Alignment location	CDS_11646:40897..41007 -
Alignment location	CDS_11646:40562..40717 -
Alignment location	CDS_11646:40365..40443 -
Alignment location	CDS_11646:40139..40256 -
Alignment location	CDS_11646:39818..39959 -
Alignment location	CDS_11646:39375..39664 -
Alignment location	CDS_11646:38924..39046 -
Alignment location	jgi.p\|Nanoce1779_2\|448311:13017..14812 +
Alignment location	jgi.p\|Nanoce1779_2\|448644:2911..5190 +
Alignment location	jgi.p\|Nanoce1779_2\|448783:30697..33270 +
Alignment location	jgi.p\|Nanoce1779_2\|448861:34775..36156 +
Alignment location	jgi.p\|Nanoce1779_2\|449010:43368..44012 +
Alignment location	jgi.p\|Nanoce1779_2\|570301:15673..21230 -
Alignment location	jgi.p\|Nanoce1779_2\|614737:101..2230 +
Alignment location	jgi.p\|Nanoce1779_2\|614746:8022..8252 -
Alignment location	jgi.p\|Nanoce1779_2\|614748:8769..11751 -
Alignment location	jgi.p\|Nanoce1779_2\|614760:24355..25116 +
Alignment location	jgi.p\|Nanoce1779_2\|614762:26602..27631 -
Alignment location	jgi.p\|Nanoce1779_2\|614801:45912..47668 +
Alignment location	jgi.p\|Nanoce1779_2\|643865:38924..42314 -
Alignment location	ncniL007:102..48766 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
jgi.p\|Nanoce1779_2\|448311	gene	jgi.p\|Nanoce1779_2\|448311:12620..14872 +
jgi.p\|Nanoce1779_2\|448311	mRNA	jgi.p\|Nanoce1779_2\|448311:12620..14872 +
CDS_11640	CDS	CDS_11640:13017..13165 +
CDS_11640	CDS	CDS_11640:13323..13455 +
CDS_11640	CDS	CDS_11640:13610..13707 +
CDS_11640	CDS	CDS_11640:13819..14013 +
CDS_11640	CDS	CDS_11640:14110..14220 +
CDS_11640	CDS	CDS_11640:14391..14486 +
CDS_11640	CDS	CDS_11640:14695..14812 +
jgi.p\|Nanoce1779_2\|448644	gene	jgi.p\|Nanoce1779_2\|448644:2714..5630 +
jgi.p\|Nanoce1779_2\|448644	mRNA	jgi.p\|Nanoce1779_2\|448644:2714..5630 +
CDS_11637	CDS	CDS_11637:2911..2940 +
CDS_11637	CDS	CDS_11637:3208..3288 +
CDS_11637	CDS	CDS_11637:3527..3798 +
CDS_11637	CDS	CDS_11637:4023..4104 +
CDS_11637	CDS	CDS_11637:4275..4376 +
CDS_11637	CDS	CDS_11637:4544..4600 +
CDS_11637	CDS	CDS_11637:4702..5190 +
jgi.p\|Nanoce1779_2\|448783	gene	jgi.p\|Nanoce1779_2\|448783:30472..33502 +
jgi.p\|Nanoce1779_2\|448783	mRNA	jgi.p\|Nanoce1779_2\|448783:30472..33502 +
CDS_11644	CDS	CDS_11644:30697..30716 +
CDS_11644	CDS	CDS_11644:30837..30952 +
CDS_11644	CDS	CDS_11644:31225..31382 +
CDS_11644	CDS	CDS_11644:31672..32710 +
CDS_11644	CDS	CDS_11644:32864..33270 +
jgi.p\|Nanoce1779_2\|448861	gene	jgi.p\|Nanoce1779_2\|448861:34521..36586 +
jgi.p\|Nanoce1779_2\|448861	mRNA	jgi.p\|Nanoce1779_2\|448861:34521..36586 +
CDS_11645	CDS	CDS_11645:34775..35063 +
CDS_11645	CDS	CDS_11645:35247..35353 +
CDS_11645	CDS	CDS_11645:35448..35501 +
CDS_11645	CDS	CDS_11645:35629..35850 +
CDS_11645	CDS	CDS_11645:35928..36044 +
CDS_11645	CDS	CDS_11645:36118..36156 +
jgi.p\|Nanoce1779_2\|449010	gene	jgi.p\|Nanoce1779_2\|449010:43253..44077 +
jgi.p\|Nanoce1779_2\|449010	mRNA	jgi.p\|Nanoce1779_2\|449010:43253..44077 +
CDS_11647	CDS	CDS_11647:43368..44012 +
jgi.p\|Nanoce1779_2\|570301	gene	jgi.p\|Nanoce1779_2\|570301:15673..21230 -
jgi.p\|Nanoce1779_2\|570301	mRNA	jgi.p\|Nanoce1779_2\|570301:15673..21230 -
CDS_11641	CDS	CDS_11641:20958..21230 -
CDS_11641	CDS	CDS_11641:19298..20798 -
CDS_11641	CDS	CDS_11641:18090..18589 -
CDS_11641	CDS	CDS_11641:15673..17949 -
jgi.p\|Nanoce1779_2\|614737	gene	jgi.p\|Nanoce1779_2\|614737:101..2270 +
jgi.p\|Nanoce1779_2\|614737	mRNA	jgi.p\|Nanoce1779_2\|614737:101..2270 +
CDS_11636	CDS	CDS_11636:101..565 +
CDS_11636	CDS	CDS_11636:710..1042 +
CDS_11636	CDS	CDS_11636:1142..1243 +
CDS_11636	CDS	CDS_11636:1364..1445 +
CDS_11636	CDS	CDS_11636:1622..2059 +
CDS_11636	CDS	CDS_11636:2166..2230 +
jgi.p\|Nanoce1779_2\|614746	gene	jgi.p\|Nanoce1779_2\|614746:7958..8437 -
jgi.p\|Nanoce1779_2\|614746	mRNA	jgi.p\|Nanoce1779_2\|614746:7958..8437 -
CDS_11638	CDS	CDS_11638:8022..8252 -
jgi.p\|Nanoce1779_2\|614748	gene	jgi.p\|Nanoce1779_2\|614748:8666..11779 -
jgi.p\|Nanoce1779_2\|614748	mRNA	jgi.p\|Nanoce1779_2\|614748:8666..11779 -
CDS_11639	CDS	CDS_11639:11648..11751 -
CDS_11639	CDS	CDS_11639:11181..11346 -
CDS_11639	CDS	CDS_11639:11005..11088 -
CDS_11639	CDS	CDS_11639:10691..10847 -
CDS_11639	CDS	CDS_11639:10350..10497 -
CDS_11639	CDS	CDS_11639:9940..10042 -
CDS_11639	CDS	CDS_11639:9741..9817 -
CDS_11639	CDS	CDS_11639:9392..9488 -
CDS_11639	CDS	CDS_11639:9066..9200 -
CDS_11639	CDS	CDS_11639:8769..8909 -
jgi.p\|Nanoce1779_2\|614760	gene	jgi.p\|Nanoce1779_2\|614760:24011..25134 +
jgi.p\|Nanoce1779_2\|614760	mRNA	jgi.p\|Nanoce1779_2\|614760:24011..25134 +
CDS_11642	CDS	CDS_11642:24355..25116 +
jgi.p\|Nanoce1779_2\|614762	gene	jgi.p\|Nanoce1779_2\|614762:25321..27818 -
jgi.p\|Nanoce1779_2\|614762	mRNA	jgi.p\|Nanoce1779_2\|614762:25321..27818 -
CDS_11643	CDS	CDS_11643:27356..27631 -
CDS_11643	CDS	CDS_11643:26602..27156 -
jgi.p\|Nanoce1779_2\|614801	gene	jgi.p\|Nanoce1779_2\|614801:45540..48766 +
jgi.p\|Nanoce1779_2\|614801	mRNA	jgi.p\|Nanoce1779_2\|614801:45540..48766 +
CDS_11648	CDS	CDS_11648:45912..46691 +
CDS_11648	CDS	CDS_11648:46880..47668 +
jgi.p\|Nanoce1779_2\|643865	gene	jgi.p\|Nanoce1779_2\|643865:38924..42314 -
jgi.p\|Nanoce1779_2\|643865	mRNA	jgi.p\|Nanoce1779_2\|643865:38924..42314 -
CDS_11646	CDS	CDS_11646:41895..42314 -
CDS_11646	CDS	CDS_11646:41584..41688 -
CDS_11646	CDS	CDS_11646:41385..41450 -
CDS_11646	CDS	CDS_11646:41191..41269 -
CDS_11646	CDS	CDS_11646:40897..41007 -
CDS_11646	CDS	CDS_11646:40562..40717 -
CDS_11646	CDS	CDS_11646:40365..40443 -
CDS_11646	CDS	CDS_11646:40139..40256 -
CDS_11646	CDS	CDS_11646:39818..39959 -
CDS_11646	CDS	CDS_11646:39375..39664 -
CDS_11646	CDS	CDS_11646:38924..39046 -
jgi.p\|Nanoce1779_2\|448311	polypeptide	jgi.p\|Nanoce1779_2\|448311:13017..14812 +
jgi.p\|Nanoce1779_2\|448644	polypeptide	jgi.p\|Nanoce1779_2\|448644:2911..5190 +
jgi.p\|Nanoce1779_2\|448783	polypeptide	jgi.p\|Nanoce1779_2\|448783:30697..33270 +
jgi.p\|Nanoce1779_2\|448861	polypeptide	jgi.p\|Nanoce1779_2\|448861:34775..36156 +
jgi.p\|Nanoce1779_2\|449010	polypeptide	jgi.p\|Nanoce1779_2\|449010:43368..44012 +
jgi.p\|Nanoce1779_2\|570301	polypeptide	jgi.p\|Nanoce1779_2\|570301:15673..21230 -
jgi.p\|Nanoce1779_2\|614737	polypeptide	jgi.p\|Nanoce1779_2\|614737:101..2230 +
jgi.p\|Nanoce1779_2\|614746	polypeptide	jgi.p\|Nanoce1779_2\|614746:8022..8252 -
jgi.p\|Nanoce1779_2\|614748	polypeptide	jgi.p\|Nanoce1779_2\|614748:8769..11751 -
jgi.p\|Nanoce1779_2\|614760	polypeptide	jgi.p\|Nanoce1779_2\|614760:24355..25116 +
jgi.p\|Nanoce1779_2\|614762	polypeptide	jgi.p\|Nanoce1779_2\|614762:26602..27631 -
jgi.p\|Nanoce1779_2\|614801	polypeptide	jgi.p\|Nanoce1779_2\|614801:45912..47668 +
jgi.p\|Nanoce1779_2\|643865	polypeptide	jgi.p\|Nanoce1779_2\|643865:38924..42314 -
ncniL007	syntenic_region	ncniL007:102..48766 +

Analyses

This supercontig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gennome assembly for N. oceanica CCMP1779	2018-02-01

Annotated Terms

Homology

Relationships

Sequences

Synonyms

Publications