jgi.p|Nanoce1779_2|614746, mRNA_11638 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|614746
Unique NamemRNA_11638
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length480
Alignment locationscaffold_91:7958..8437 -

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Properties
Property NameValue
TranscriptId614832
TrackFilteredModels2
ProteinId614746
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:7958..8437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|614746gene_11638Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|614746mRNA_11638-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11638CDS_11638Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11638 ID=mRNA_11638|Name=jgi.p|Nanoce1779_2|614746|organism=Nannochloropsis oceanica|type=mRNA|length=480bp
GAGAAGAGAAGAAGAAATACGGGTCGGGCCTCCACAAGCAAGCACCACGC
AAAGAATGAAGAATCGATTTGAAAAAATGAATGAAGGGTTGAGAGGAAGA
ATGAGGAAAGGAGTGGAGGAATAGAAACCTTTTAATTTCTTCCTTTATTT
GGTGGTATTTTGGGGTTTTCTAAGGTTGTTGACATATGCATTTGTTCCTC
GCACCTATAGTCCTCTTTCTCTACTCTCCCTCTCTCTACTCTCTCTGCGC
ACTCTCTCTTTACTCTCTCTCTCTTTACTGTCATTATCTTGTTACTCTCC
TTCCAATCGATTGTCTCTTTCACTCTCAGTGTCTTAAATCATCCACCATG
TCAGTCCCACCCCTCCCACCTTCCCTCCCTCCCTCTGCCCCTCCCTCGCT
CCCTCCCTCACAGTAGCCCCTGCGTCCACGTCGTCAACGTGGGGGCCCAT
ACCTTCCAATGACCCCTCAACAGCGCTTCC
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protein sequence of jgi.p|Nanoce1779_2|614746

>mRNA_11638-protein ID=mRNA_11638-protein|Name=jgi.p|Nanoce1779_2|614746|organism=Nannochloropsis oceanica|type=polypeptide|length=77bp
MHLFLAPIVLFLYSPSLYSLCALSLYSLSLYCHYLVTLLPIDCLFHSQCL
KSSTMSVPPLPPSLPPSAPPSLPPSQ*
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mRNA from alignment at scaffold_91:7958..8437-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11638 ID=mRNA_11638|Name=jgi.p|Nanoce1779_2|614746|organism=Nannochloropsis oceanica|type=mRNA|length=480bp|location=Sequence derived from alignment at scaffold_91:7958..8437- (Nannochloropsis oceanica)
GAGAAGAGAAGAAGAAATACGGGTCGGGCCTCCACAAGCAAGCACCACGC
AAAGAATGAAGAATCGATTTGAAAAAATGAATGAAGGGTTGAGAGGAAGA
ATGAGGAAAGGAGTGGAGGAATAGAAACCTTTTAATTTCTTCCTTTATTT
GGTGGTATTTTGGGGTTTTCTAAGGTTGTTGACATATGCATTTGTTCCTC
GCACCTATAGTCCTCTTTCTCTACTCTCCCTCTCTCTACTCTCTCTGCGC
ACTCTCTCTTTACTCTCTCTCTCTTTACTGTCATTATCTTGTTACTCTCC
TTCCAATCGATTGTCTCTTTCACTCTCAGTGTCTTAAATCATCCACCATG
TCAGTCCCACCCCTCCCACCTTCCCTCCCTCCCTCTGCCCCTCCCTCGCT
CCCTCCCTCACAGTAGCCCCTGCGTCCACGTCGTCAACGTGGGGGCCCAT
ACCTTCCAATGACCCCTCAACAGCGCTTCC
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Coding sequence (CDS) from alignment at scaffold_91:7958..8437-

>mRNA_11638 ID=mRNA_11638|Name=jgi.p|Nanoce1779_2|614746|organism=Nannochloropsis oceanica|type=CDS|length=231bp|location=Sequence derived from alignment at scaffold_91:7958..8437- (Nannochloropsis oceanica)
ATGCATTTGTTCCTCGCACCTATAGTCCTCTTTCTCTACTCTCCCTCTCT
CTACTCTCTCTGCGCACTCTCTCTTTACTCTCTCTCTCTTTACTGTCATT
ATCTTGTTACTCTCCTTCCAATCGATTGTCTCTTTCACTCTCAGTGTCTT
AAATCATCCACCATGTCAGTCCCACCCCTCCCACCTTCCCTCCCTCCCTC
TGCCCCTCCCTCGCTCCCTCCCTCACAGTAG
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Synonyms
Publications