jgi.p|Nanoce1779_2|614801, mRNA_11648 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|614801
Unique Name	mRNA_11648
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2851
Alignment location	scaffold_91:45540..48766 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	614887
Track	FilteredModels2
ProteinId	614801

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_91	supercontig	scaffold_91:45540..48766 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|614801	gene_11648	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|614801	mRNA_11648-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11648	CDS_11648	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_91:45540..48766+
coding sequence from alignment at scaffold_91:45540..48766+

mRNA sequence

>mRNA_11648 ID=mRNA_11648|Name=jgi.p|Nanoce1779_2|614801|organism=Nannochloropsis oceanica|type=mRNA|length=2851bp
ACAGATCTAACACATTGCAAAGGACTCTTCTTCCATTTGTGGTACCAGAA
AAGCATCGCGATGCTCTCCATCTTCCGCTTAGAACATTTCATTGCCGTCA
TATTGTCAATTGTAAGTCAATATTTGTCTGAGGGAAACGGGAGAGGGTAA
GCAGAGACAAGAGCAATGCTATCTCTGACCACGTATAATTCATTTACTAT
GATTGCTTAAATAAAGCGTTCTCTAGCCGCTGCGGGATCTTTCGAGAACT
TTACGCTTGGGACCATCAACCTGCAGCAGGGCTGGACAGTGCAAGATTCA
TTTGGGACCTCTGTCGGCACCCTTTTTGATCAAACAATCGAGGACACCCA
GAATAGCGGCCGTGTGTGGCGCATGTCAAATGCCCATACAACTTCTGGGT
TTTCCAATCATCCCTTTTCGCCCACGACAGCACAAGTGGCAGGTGAACCG
GGCAGTAGCCTTTGGAACGACTTTGGGAGCGACCATACCAAGCCTAAAAA
TCCACCGGGCTACCGAGCCAATGCCACGATCGCCACCTTCTACACGCGCG
TGAATTTCACGTCCGCCACGGGATCCCCCCAGCCGGGTCTTTCCTTGGGA
CTGTCCCTGTGTGCCAAGCAGTCAAACTGGCGCATGACCTTGATCCAGCT
GAATGACAACGGTGCGGGTATCGATATCGTTTACTGGGATAATACGGTGA
ACCAGTTTAATAACGGTTCTATATTCAGCAGCACTCGTATCGCCTCTGGC
TTATCCTACACTGCGGTTCACTCCCTGGAGATGGTTACATACTTCAAAGA
TGGATTTAATAATGACGTTGTCAATATCTTTCTGGACGGCACCCTTATTC
ATACCGGCAGCACATGGGAGGTATATTACTACTTTTTGGGAGACGTGGAC
ATCCAGCCGCGTCTTCAGGCAGTTGACTCACTTCTAGTACGATCCAGTGG
GACGGCGCAGCCAGAATACGAAGATGGAGGCTTTTTTTTTACTGAGATAG
ATGTATCCACGTATATCCCTCCCGCAGTACCAGTAATACTGCCCACTCCC
GTCGGGGAAAGAGTGATTTTGCAATTTGATCTGACTGATGGCGATAGCAA
CAATGTCAGTGGACAGATTGAATTCGCCGAGGTCACCAGCCCCGGATTCA
CGACTTTTACCAATGTGAACGTCACCGCTGGTGAGGCGGATCCATTGTAT
GTGCCGCCAAGCAATTTTGTCCTCGGCACCCCTCCCATCTATATTGACAT
TTCTACCGACGCTGTCATTTCACCTCCAGTCCTTGTCTGCTTGACATACG
CAACCAGCGCCTTTCCCGAGAATACAGAACCACAAATATTTCATTTTATT
GGAGAACGGTGGGTGGATGCGACCACTCGCATCAATACGACGGCCCAAAT
TGTCTGCGGTGAGGTCCAGTCTCTTAGTCCTTTTGCGGTAGGCTCCCTTA
TCATCACGCCTGATGCTTTCGCGGTCAATCGCCTTCGACTAAAAGACAAG
CAAAACCAAAAGGATGCCTGGACTTTGTCGGGCCTATTCGAGACCGCTAA
TATCACGACCAATGATCTGCTCGAGGCTATGGACGGGAAAGGAGTCCAGT
TTGAAGTGTATGGCCAGCGGGGACTCATCAGCAGCGTAGTCTTCGAGGGC
AAAAATTGTCGTCGCATAGGGAGGTCAGCTTCTACCGAAAAGCTCTCATG
CCGTATGAAGCAGGGACAGATATCGACAACTGCTCGTGCCACCTTCAAGC
AGTACAAGCAGAGTAGCCGCCTCTTCGTTAAAGCCACATTTTCGGGATGT
ACTTTTGACATCACGACATCGCTCAGATCTCTCACCCCCTTAAAGGTCCG
AATCATAACACCAACTAGCCTTGGAGCACTTGACTCTCCTTCACTTCGCT
GCAAAGAATCCTCGTCCAGGATGCGCTGCGTTGCAGCTTAAATGGTTCGA
AACATGACGGCATTTCTTTCCCCATCCGAGCTACAATGTCTCCAAGAATC
GTGTTGACCCCAAGCCCCACATATTGTTCCTCTGTTGCCATGTCCTGTAG
TCATTCTCTGCGGCCTGTGCCCGATTGCTCGGCGCCAAATACTTTCTGTA
TAGGCCGTACGGCTTATCTTATTTGTGGTGTTTTTGTTTTATTATTGCGC
GCTTCGCGCTATTTGTTTGTTGAAGGATCTAAGAGGACTGTATGTCATGT
TCAGGAGTGAAATATGCTCTTGAAAGTTCTTCACTTCGGGATTTAAACTC
AAATCTGGGCGCAAAGGATTCTATGCCCACTGATCGGGAGGCCGGACTTC
GACGTCCTGAAATAAATAACGATGTTTCATTGATACTATTTCTCTCCAAA
GCAATCCATGGTTCACTTTGTAAATACATCTTGTTTCTCAAATTGGCTGA
TGGATGCTGGACCTGATTCCTTCTTTAACCATCTCATCAGTATTCATCGG
ACTCGAATCATATTTCCTGCTCACAAAGGCAAAAACATCGACTGCCAGTC
CCTCTTATACTGCAGTCATATAGACATCCGTTGGATCACTAACCCGAAGA
CGTCCGTCCTTTCTCATGGCAGATCCAATACGGCCGAAGGGAAAAATCAA
TTCAGCTTGTACACCACGACTGTCTTTGCTTAGATCTTTATAATAATATA
ATGCCTTATTCCAAATACAAAGAAAAGTACACCCATAAGAGGCGAGTTTC
CTCACCGATGGTTATGATCAGCGCTCTTCAGGTCCGGAGAACACTCGACA
TCTACCACTGAAATTTTGCTGCGGATCCGATCGTCGAGCAGGTCCGTGGT
TTTGATGGGGTAGCCCTAGATGAAAGGAGGGTGAAAGGAGGAAGAAGGGA
G

protein sequence of jgi.p|Nanoce1779_2|614801

>mRNA_11648-protein ID=mRNA_11648-protein|Name=jgi.p|Nanoce1779_2|614801|organism=Nannochloropsis oceanica|type=polypeptide|length=523bp
MSNAHTTSGFSNHPFSPTTAQVAGEPGSSLWNDFGSDHTKPKNPPGYRAN
ATIATFYTRVNFTSATGSPQPGLSLGLSLCAKQSNWRMTLIQLNDNGAGI
DIVYWDNTVNQFNNGSIFSSTRIASGLSYTAVHSLEMVTYFKDGFNNDVV
NIFLDGTLIHTGSTWEVYYYFLGDVDIQPRLQAVDSLLVRSSGTAQPEYE
DGGFFFTEIDVSTYIPPAVPVILPTPVGERVILQFDLTDGDSNNVSGQIE
FAEVTSPGFTTFTNVNVTAGEADPLYVPPSNFVLGTPPIYIDISTDAVIS
PPVLVCLTYATSAFPENTEPQIFHFIGERWVDATTRINTTAQIVCGEVQS
LSPFAVGSLIITPDAFAVNRLRLKDKQNQKDAWTLSGLFETANITTNDLL
EAMDGKGVQFEVYGQRGLISSVVFEGKNCRRIGRSASTEKLSCRMKQGQI
STTARATFKQYKQSSRLFVKATFSGCTFDITTSLRSLTPLKVRIITPTSL
GALDSPSLRCKESSSRMRCVAA*

mRNA from alignment at scaffold_91:45540..48766+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11648 ID=mRNA_11648|Name=jgi.p|Nanoce1779_2|614801|organism=Nannochloropsis oceanica|type=mRNA|length=3227bp|location=Sequence derived from alignment at scaffold_91:45540..48766+ (Nannochloropsis oceanica)
ACAGATCTAACACATTGCAAAGGACTCTTCTTCCATTTGTGGTACCAGAA
AAGCATCGCGATGCTCTCCATCTTCCGCTTAGAACATTTCATTGCCGTCA
TATTGTCAATTGTAAGTCAATATTTGTCTGAGGGAAACGGGAGAGGGTAA
GCAGAGACAAGAGCAATGCTATCTCTGACCACGTATAATTCATTTACTAT
GATTGCTTAAATAAAGCGTTCTCTAGCCGCTGCGGGATCTTTCGAGAACT
TTACGCTTGGGACCATCAACCTGCAGCAGGGCTGGACAGTGCAAGATTCA
TTTGGGACCTCTGTCGGCACCCTTTTTGATCAAACAATCGAGGACACCCA
GAATAGCGGCCGTGTGTGGCGCATGTCAAATGCCCATACAACTTCTGGGT
TTTCCAATCATCCCTTTTCGCCCACGACAGCACAAGTGGCAGGTGAACCG
GGCAGTAGCCTTTGGAACGACTTTGGGAGCGACCATACCAAGCCTAAAAA
TCCACCGGGCTACCGAGCCAATGCCACGATCGCCACCTTCTACACGCGCG
TGAATTTCACGTCCGCCACGGGATCCCCCCAGCCGGGTCTTTCCTTGGGA
CTGTCCCTGTGTGCCAAGCAGTCAAACTGGCGCATGACCTTGATCCAGCT
GAATGACAACGGTGCGGGTATCGATATCGTTTACTGGGATAATACGGTGA
ACCAGTTTAATAACGGTTCTATATTCAGCAGCACTCGTATCGCCTCTGGC
TTATCCTACACTGCGGTTCACTCCCTGGAGATGGTTACATACTTCAAAGA
TGGATTTAATAATGACGTTGTCAATATCTTTCTGGACGGCACCCTTATTC
ATACCGGCAGCACATGGGAGGTATATTACTACTTTTTGGGAGACGTGGAC
ATCCAGCCGCGTCTTCAGGCAGTTGACTCACTTCTAGTACGATCCAGTGG
GACGGCGCAGCCAGAATACGAAGATGGAGGCTTTTTTTTTACTGAGATAG
ATGTATCCACGTATATCCCTCCCGCAGTACCAGTAATACTGCCCACTCCC
GTCGGGGAAAGAGTGATTTTGCAATTTGATCTGACTGATGGCGATAGCAA
CAATGTCAGTGGACAGATTGAATTCGCCGAGGTCACCAGCCCCGGATTCA
CGGTAAGCGAACACATGATGATGTGCGTAGGAAGATGCACCCTACCGGTG
CGCCCGTCTTCAGTGTAATTTCTTTGCCCATCTTACGAGTCCACCCCGAA
TACCTCGCGCTGCCGCCACTGCGGCCATTTTTATCTCCTCCTGACTCCCA
CTACTCGTCAATAACTTCTCTCTCATCGTTCAATGAACAGACTTTTACCA
ATGTGAACGTCACCGCTGGTGAGGCGGATCCATTGTATGTGCCGCCAAGC
AATTTTGTCCTCGGCACCCCTCCCATCTATATTGACATTTCTACCGACGC
TGTCATTTCACCTCCAGTCCTTGTCTGCTTGACATACGCAACCAGCGCCT
TTCCCGAGAATACAGAACCACAAATATTTCATTTTATTGGAGAACGGTGG
GTGGATGCGACCACTCGCATCAATACGACGGCCCAAATTGTCTGCGGTGA
GGTCCAGTCTCTTAGTCCTTTTGCGGTAGGCTCCCTTATCATCACGCCTG
ATGCTTTCGCGGTCAATCGCCTTCGACTAAAAGACAAGCAAAACCAAAAG
GATGCCTGGACTTTGTCGGGCCTATTCGAGACCGCTAATATCACGACCAA
TGATCTGCTCGAGGCTATGGACGGGAAAGGAGTCCAGTTTGAAGTGTATG
GCCAGCGGGGACTCATCAGCAGCGTAGTCTTCGAGGGCAAAAATTGTCGT
CGCATAGGGAGGTCAGCTTCTACCGAAAAGCTCTCATGCCGTATGAAGCA
GGGACAGATATCGACAACTGCTCGTGCCACCTTCAAGCAGTACAAGCAGA
GTAGCCGCCTCTTCGTTAAAGCCACATTTTCGGGATGTACTTTTGACATC
ACGACATCGCTCAGATCTCTCACCCCCTTAAAGGTCCGAATCATAACACC
AACTAGCCTTGGAGCACTTGACTCTCCTTCACTTCGCTGCAAAGAATCCT
CGTCCAGGATGCGCTGCGTTGCAGCTTAAATGGTTCGAAACATGACGGCA
TTTCTTTCCCCATCCGAGCTACAATGTCTCCAAGAATCGTGTTGACCCCA
AGCCCCACATATTGTTCCTCTGTTGCCATGTCCTGTAGTCATTCTCTGCG
GCCTGTGCCCGATTGCTCGGCGCCAAATACTTTCTGTATAGGCCGTACGG
CTTATCTTATTTGTGGTGTTTTTGTTTTATTATTGCGCGCTTCGCGCTAT
TTGTTTGTTGAAGGATCTAAGAGGACTGTATGTCATGTTCAGGAGTGAAA
TATGCTCTTGAAAGTTCTTCACTTCGGGATTTAAACTCAAATCTGGGCGC
AAAGGATTCTATGCCCACTGATCGGGAGGCCGGACTTCGACGTCCTGAAA
TAAATAACGATGTTTCATTGATACTATTTCTCTCCAAAGCAATCCATGGT
TCACTTTGTAAATACATCTTGTTTCTCAAATTGGCTGATGGATGCTGGAC
CTGATTCCTTCTTTAACCATCTCATCAGTATTCATCGGACTCGAATCATA
TTTCCTGCTCACAAAGGCAAAAACATCGACTGCCAGTCCCTCTTATACTG
CAGTCATATAGACATCCGTTGGATCACTAACCCGAAGACGTCCGTCCTTT
CTCATGGCAGATCCAATACGGCCGAAGGGAAAAATCAATTCAGCTTGTAC
ACCACGACTGTCTTTGCTTAGATCTTTATAATAATATGTAAGTGCTTGAG
TAGACTGATGATCAAGCGTCTTAAAAAACTTTCCTAAGACGAAGGGCACA
AAAACTCTTCTGAATTGTTTGCACGTCCACGGTCTTTGTTTTGTAATAAT
CTACATCCCCTGTCTTCATTCTAAAGTCTCATTAATACAGTAATACTCAC
CCATTTTCTTGGTCTTCTAAAACAGAATGCCTTATTCCAAATACAAAGAA
AAGTACACCCATAAGAGGCGAGTTTCCTCACCGATGGTTATGATCAGCGC
TCTTCAGGTCCGGAGAACACTCGACATCTACCACTGAAATTTTGCTGCGG
ATCCGATCGTCGAGCAGGTCCGTGGTTTTGATGGGGTAGCCCTAGATGAA
AGGAGGGTGAAAGGAGGAAGAAGGGAG

Coding sequence (CDS) from alignment at scaffold_91:45540..48766+

>mRNA_11648 ID=mRNA_11648|Name=jgi.p|Nanoce1779_2|614801|organism=Nannochloropsis oceanica|type=CDS|length=3138bp|location=Sequence derived from alignment at scaffold_91:45540..48766+ (Nannochloropsis oceanica)
ATGTCAAATGCCCATACAACTTCTGGGTTTTCCAATCATCCCTTTTCGCC
CACGACAGCACAAGTGGCAGGTGAACCGGGCAGTAGCCTTTGGAACGACT
TTGGGAGCGACCATACCAAGCCTAAAAATCCACCGGGCTACCGAGCCAAT
GCCACGATCGCCACCTTCTACACGCGCGTGAATTTCACGTCCGCCACGGG
ATCCCCCCAGCCGGGTCTTTCCTTGGGACTGTCCCTGTGTGCCAAGCAGT
CAAACTGGCGCATGACCTTGATCCAGCTGAATGACAACGGTGCGGGTATC
GATATCGTTTACTGGGATAATACGGTGAACCAGTTTAATAACGGTTCTAT
ATTCAGCAGCACTCGTATCGCCTCTGGCTTATCCTACACTGCGGTTCACT
CCCTGGAGATGGTTACATACTTCAAAGATGGATTTAATAATGACGTTGTC
AATATCTTTCTGGACGGCACCCTTATTCATACCGGCAGCACATGGGAGGT
ATATTACTACTTTTTGGGAGACGTGGACATCCAGCCGCGTCTTCAGGCAG
TTGACTCACTTCTAGTACGATCCAGTGGGACGGCGCAGCCAGAATACGAA
GATGGAGGCTTTTTTTTTACTGAGATAGATGTATCCACGTATATCCCTCC
CGCAGTACCAGTAATACTGCCCACTCCCGTCGGGGAAAGAGTGATTTTGC
AATTTGATCTGACTGATGGCGATAGCAACAATGTCAGTGGACAGATTGAA
TTCGCCGAGGTCACCAGCCCCGGATTCACGACTTTTACCAATGTGAACGT
CACCGCTGGTGAGGCGGATCCATTGTATGTGCCGCCAAGCAATTTTGTCC
TCGGCACCCCTCCCATCTATATTGACATTTCTACCGACGCTGTCATTTCA
CCTCCAGTCCTTGTCTGCTTGACATACGCAACCAGCGCCTTTCCCGAGAA
TACAGAACCACAAATATTTCATTTTATTGGAGAACGGTGGGTGGATGCGA
CCACTCGCATCAATACGACGGCCCAAATTGTCTGCGGTGAGGTCCAGTCT
CTTAGTCCTTTTGCGGTAGGCTCCCTTATCATCACGCCTGATGCTTTCGC
GGTCAATCGCCTTCGACTAAAAGACAAGCAAAACCAAAAGGATGCCTGGA
CTTTGTCGGGCCTATTCGAGACCGCTAATATCACGACCAATGATCTGCTC
GAGGCTATGGACGGGAAAGGAGTCCAGTTTGAAGTGTATGGCCAGCGGGG
ACTCATCAGCAGCGTAGTCTTCGAGGGCAAAAATTGTCGTCGCATAGGGA
GGTCAGCTTCTACCGAAAAGCTCTCATGCCGTATGAAGCAGGGACAGATA
TCGACAACTGCTCGTGCCACCTTCAAGCAGTACAAGCAGAGTAGCCGCCT
CTTCGTTAAAGCCACATTTTCGGGATGTACTTTTGACATCACGACATCGC
TCAGATCTCTCACCCCCTTAAAGGTCCGAATCATAACACCAACTAGCCTT
GGAGCACTTGACTCTCCTTCACTTCGCTGCAAAGAATCCTCGTCCAGGAT
GCGCTGCGTTGCAGCTTAAATGTCAAATGCCCATACAACTTCTGGGTTTT
CCAATCATCCCTTTTCGCCCACGACAGCACAAGTGGCAGGTGAACCGGGC
AGTAGCCTTTGGAACGACTTTGGGAGCGACCATACCAAGCCTAAAAATCC
ACCGGGCTACCGAGCCAATGCCACGATCGCCACCTTCTACACGCGCGTGA
ATTTCACGTCCGCCACGGGATCCCCCCAGCCGGGTCTTTCCTTGGGACTG
TCCCTGTGTGCCAAGCAGTCAAACTGGCGCATGACCTTGATCCAGCTGAA
TGACAACGGTGCGGGTATCGATATCGTTTACTGGGATAATACGGTGAACC
AGTTTAATAACGGTTCTATATTCAGCAGCACTCGTATCGCCTCTGGCTTA
TCCTACACTGCGGTTCACTCCCTGGAGATGGTTACATACTTCAAAGATGG
ATTTAATAATGACGTTGTCAATATCTTTCTGGACGGCACCCTTATTCATA
CCGGCAGCACATGGGAGGTATATTACTACTTTTTGGGAGACGTGGACATC
CAGCCGCGTCTTCAGGCAGTTGACTCACTTCTAGTACGATCCAGTGGGAC
GGCGCAGCCAGAATACGAAGATGGAGGCTTTTTTTTTACTGAGATAGATG
TATCCACGTATATCCCTCCCGCAGTACCAGTAATACTGCCCACTCCCGTC
GGGGAAAGAGTGATTTTGCAATTTGATCTGACTGATGGCGATAGCAACAA
TGTCAGTGGACAGATTGAATTCGCCGAGGTCACCAGCCCCGGATTCACGA
CTTTTACCAATGTGAACGTCACCGCTGGTGAGGCGGATCCATTGTATGTG
CCGCCAAGCAATTTTGTCCTCGGCACCCCTCCCATCTATATTGACATTTC
TACCGACGCTGTCATTTCACCTCCAGTCCTTGTCTGCTTGACATACGCAA
CCAGCGCCTTTCCCGAGAATACAGAACCACAAATATTTCATTTTATTGGA
GAACGGTGGGTGGATGCGACCACTCGCATCAATACGACGGCCCAAATTGT
CTGCGGTGAGGTCCAGTCTCTTAGTCCTTTTGCGGTAGGCTCCCTTATCA
TCACGCCTGATGCTTTCGCGGTCAATCGCCTTCGACTAAAAGACAAGCAA
AACCAAAAGGATGCCTGGACTTTGTCGGGCCTATTCGAGACCGCTAATAT
CACGACCAATGATCTGCTCGAGGCTATGGACGGGAAAGGAGTCCAGTTTG
AAGTGTATGGCCAGCGGGGACTCATCAGCAGCGTAGTCTTCGAGGGCAAA
AATTGTCGTCGCATAGGGAGGTCAGCTTCTACCGAAAAGCTCTCATGCCG
TATGAAGCAGGGACAGATATCGACAACTGCTCGTGCCACCTTCAAGCAGT
ACAAGCAGAGTAGCCGCCTCTTCGTTAAAGCCACATTTTCGGGATGTACT
TTTGACATCACGACATCGCTCAGATCTCTCACCCCCTTAAAGGTCCGAAT
CATAACACCAACTAGCCTTGGAGCACTTGACTCTCCTTCACTTCGCTGCA
AAGAATCCTCGTCCAGGATGCGCTGCGTTGCAGCTTAA

Synonyms

Publications