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Properties
Property Name | Value |
TranscriptId | 448397 |
Track | FilteredModels2 |
ProteinId | 448311 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_91 | supercontig | scaffold_91:12620..14872 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_11640 ID=mRNA_11640|Name=jgi.p|Nanoce1779_2|448311|organism=Nannochloropsis oceanica|type=mRNA|length=1357bp CCCCACATACTCCAAAACCAGATAATCGACCTCCCCACCCCCACGAAGGG AAGCCACTCTGTGCTCTCTCGAGCAGTACAACCTCTGCACTTCCCGTTCC TTTTTGTTTATATATCATTTCTTTCTTTCTCAGGCATGCCTGGCAACGTA GCCTCCGATATCTTCCCCAAATTTGCTTCTCATACTACATAGTGCTTATT AGCCATCACCGCTATCACATTCTGCCGGCAGCTCTGAGAATGGGCCCTTC GCACACACACAGACTCATCCCTCGGCTCTGTCCCTCATTTTTCGACACCT ACAGGTGACACTGCACTTGAGACACCTCCCATTTCACCTACCCACTCTTA CTCTTTCCCTGCGCACCCACTCCCGACACCGCACAGCCAAGACGGAAATG AGGCCCCCGGCCCTGCCCAACGCGCGCCTTCTTTGGGCCTTCGACTTCGA CGGTGTCTTGTGTCACTCTGCCAAGGAGTTGTGCTTGACAGGATGGGCTG CCGCCCAGGAGTTTTGGCCAAGTGAGACACAGACGTGGCCCAAAAGGCCC GGCCCCGCCACCCTCTCCTCCTTCTACCGAGTGCGACCCGTGGTTGAGAC GGGCTGGGAGGTCATGCTCATCAACCGTGCACTGCAAGAGGGAGAGTACT CTGCCGACACCATCCTGAAGGAGTATACGGCTTCCCTTCGCGAGTCCCTC ATGAAGGAATACGGCGGTCATGCTCCAGAAGCCTATATGGACACTTTTCG GTCCGTTCGACAGGCGTGGATGACTAGAGATGAGAGGGGCTGGCTCAGCG AGAACGATTTCTACCCCACTGCCGTTTCCAGCATTAAGCACCTCCTCTCC TCCCATCCTCCTTCCTCCCCATCTACGTACATCGTCACTACGAAGGGGAA GGAGTTCACCTTAAAGCTGCTGGAGGGGATGGGGGTGGCAATGCCAGAAT CATGTGTCTTTGGTTTGGGCAGCGGGAAGAAAGTGGATGTGTTGCAGCAG CTTTTGGACAAGTATGATGCAGAGAGCAAGGCCAGAGAGGGCAAGGAGAA AAAGGAAGCCAAAGAGGGAGACATGGAGACACGTGTTATCTTTATCGAAG ACCGGCTCCAAACCCTCCTAGGCATCTTAGACCATCCTTCTCCCGACGTA CGCGACCGAGCGGATCTACTCTTGGCAGGCTGGGGTTACAACACAGCCGA AGAACGCGCGGTGGCCGCGTCCCACCCGTCCATCACCTACCTGGAAACCG AGCAAGCGTTGCTCGACTATGTAAAGGAGCGACACAGAAATTTGTAAGGG TATTCTTGAGGAGGAGGAGAAGAACGATTCGTGGCAAAACAGAACTAGGA GTAAAGG back to topprotein sequence of jgi.p|Nanoce1779_2|448311 >mRNA_11640-protein ID=mRNA_11640-protein|Name=jgi.p|Nanoce1779_2|448311|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp MRPPALPNARLLWAFDFDGVLCHSAKELCLTGWAAAQEFWPSETQTWPKR PGPATLSSFYRVRPVVETGWEVMLINRALQEGEYSADTILKEYTASLRES LMKEYGGHAPEAYMDTFRSVRQAWMTRDERGWLSENDFYPTAVSSIKHLL SSHPPSSPSTYIVTTKGKEFTLKLLEGMGVAMPESCVFGLGSGKKVDVLQ QLLDKYDAESKAREGKEKKEAKEGDMETRVIFIEDRLQTLLGILDHPSPD VRDRADLLLAGWGYNTAEERAVAASHPSITYLETEQALLDYVKERHRNL* back to topmRNA from alignment at scaffold_91:12620..14872+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_11640 ID=mRNA_11640|Name=jgi.p|Nanoce1779_2|448311|organism=Nannochloropsis oceanica|type=mRNA|length=2253bp|location=Sequence derived from alignment at scaffold_91:12620..14872+ (Nannochloropsis oceanica) CCCCACATACTCCAAAACCAGATAATCGACCTCCCCACCCCCACGAAGGG
AAGCCACTCTGTGCTCTCTCGAGCAGTACAACCTCTGCACTTCCCGTTCC
TTTTTGTTTATATATCATTTCTTTCTTTCTCAGGCATGCCTGGCAACGTA
GCCTCCGATATCTTCCCCAAATTTGCTTCTCATACTACATAGTGCTTATT
AGCCATCACCGCTATCACATTCTGCCGGCAGCTCTGAGAATGGGCCCTTC
GCACACACACAGACTCATCCCTCGGCTCTGTCCCTCATTTTTCGACACCT
ACAGGTGACACTGCACTTGAGACACCTCCCATTTCACCTACCCACTCTTA
CTCTTTCCCTGCGCACCCACTCCCGACACCGCACAGCCAAGACGGAAATG
AGGCCCCCGGCCCTGCCCAACGCGCGCCTTCTTTGGGCCTTCGACTTCGA
CGGTGTCTTGTGTCACTCTGCCAAGGAGTTGTGCTTGACAGGATGGGCTG
CCGCCCAGGAGTTTTGGCCAAGTGAGACACAGACGTGGCCCAAAAGGTGG
GTGGTCTCGAGGAGAGGGGGAAAGGAAGGGATTGAAGGAGGCATGATGAA
CCAACTTATCGCGCGACAGAGTTAAATGAATTATGTGGCGGCTTTTCTTA
ACACCACATGTTCCTAAATCCGCTTCTTCCCTCGTTTTCTTCCGGCCTTC
CAGGCCCGGCCCCGCCACCCTCTCCTCCTTCTACCGAGTGCGACCCGTGG
TTGAGACGGGCTGGGAGGTCATGCTCATCAACCGTGCACTGCAAGAGGGA
GAGTACTCTGCCGACACCATCCTGAAGGAGTATACGGTATGCGCAACCCT
ACCCCTGCCCCTCCCTCCTGGTCTTTTTCCGTCACTTCCTGAAGAGTCAT
CTCTCTCGTTCGGCTATCTTTTAGAATTATTCTTTTTATTTTTCATCCCC
CTCATTACTTTCATCCCCTCCTTGCCTGCCCTCTTTCCAGGCTTCCCTTC
GCGAGTCCCTCATGAAGGAATACGGCGGTCATGCTCCAGAAGCCTATATG
GACACTTTTCGGTCCGTTCGACAGGCGTGGATGACTAGGTAAGTAGGTAG
GGAGGGAGGGAAGATGAGCCAATCATTGCACCCTGGGTTCAAATTTTATT
TCTATCCCTTTCTCCTTTCCTCTGTCCAACCGACATCCTTCAACCTTAGA
GATGAGAGGGGCTGGCTCAGCGAGAACGATTTCTACCCCACTGCCGTTTC
CAGCATTAAGCACCTCCTCTCCTCCCATCCTCCTTCCTCCCCATCTACGT
ACATCGTCACTACGAAGGGGAAGGAGTTCACCTTAAAGCTGCTGGAGGGG
ATGGGGGTGGCAATGCCAGAATCATGTGTCTTTGGTTTGGGCAGGTAGGG
AGGGAAGGAGGGAGGGAGGGGATGTGGGAGACTGTAGGACTTGCTCACAT
TTAACCCCCCCCCCCGACCTTTTATAATACCGAATGACAGCGGGAAGAAA
GTGGATGTGTTGCAGCAGCTTTTGGACAAGTATGATGCAGAGAGCAAGGC
CAGAGAGGGCAAGGAGAAAAAGGAAGCCAAAGAGGGAGACATGGAGACAC
GGTACGCGTGCACCTGTGTGTACGTGTGCTTTGACGACTGTTTTCTTCGT
CCTTCCCTCCATTTCAGTCCTCCATATCTGGTCTTCCGCGTCATTTACTC
GGACCACTACCTCACCCCTCACATTCTCAGATCTCTCCCCTCCCTCCCGT
CCCTCTCTCTTTCCCGCCTAGTGTTATCTTTATCGAAGACCGGCTCCAAA
CCCTCCTAGGCATCTTAGACCATCCTTCTCCCGACGTACGCGACCGAGCG
GATCTACTCTTGGCAGGGTCAGAAGGGAGGGGTTGAGATAGGGAGGGAAG
AAATAGGAATGTGTGTGGAGGGGGGAGCTGTTTTTCAATCCATTCTTTAT
TCCTCCCTCCCTCGCTACAGGCTAAAATATGCCCGCGCAAACACTTTCAG
TTCCTCTCATCCATTCCCTCCTTCCACCTTTCCCCTATTTCCTTTCTTTC
TCCCACTCTTCCTTGGATTGAATAGCTGGGGTTACAACACAGCCGAAGAA
CGCGCGGTGGCCGCGTCCCACCCGTCCATCACCTACCTGGAAACCGAGCA
AGCGTTGCTCGACTATGTAAAGGAGCGACACAGAAATTTGTAAGGGTATT
CTTGAGGAGGAGGAGAAGAACGATTCGTGGCAAAACAGAACTAGGAGTAA
AGG back to topCoding sequence (CDS) from alignment at scaffold_91:12620..14872+ >mRNA_11640 ID=mRNA_11640|Name=jgi.p|Nanoce1779_2|448311|organism=Nannochloropsis oceanica|type=CDS|length=6300bp|location=Sequence derived from alignment at scaffold_91:12620..14872+ (Nannochloropsis oceanica) ATGAGGCCCCCGGCCCTGCCCAACGCGCGCCTTCTTTGGGCCTTCGACTT CGACGGTGTCTTGTGTCACTCTGCCAAGGAGTTGTGCTTGACAGGATGGG CTGCCGCCCAGGAGTTTTGGCCAAGTGAGACACAGACGTGGCCCAAAAGG CCCGGCCCCGCCACCCTCTCCTCCTTCTACCGAGTGCGACCCGTGGTTGA GACGGGCTGGGAGGTCATGCTCATCAACCGTGCACTGCAAGAGGGAGAGT ACTCTGCCGACACCATCCTGAAGGAGTATACGGCTTCCCTTCGCGAGTCC CTCATGAAGGAATACGGCGGTCATGCTCCAGAAGCCTATATGGACACTTT TCGGTCCGTTCGACAGGCGTGGATGACTAGAGATGAGAGGGGCTGGCTCA GCGAGAACGATTTCTACCCCACTGCCGTTTCCAGCATTAAGCACCTCCTC TCCTCCCATCCTCCTTCCTCCCCATCTACGTACATCGTCACTACGAAGGG GAAGGAGTTCACCTTAAAGCTGCTGGAGGGGATGGGGGTGGCAATGCCAG AATCATGTGTCTTTGGTTTGGGCAGCGGGAAGAAAGTGGATGTGTTGCAG CAGCTTTTGGACAAGTATGATGCAGAGAGCAAGGCCAGAGAGGGCAAGGA GAAAAAGGAAGCCAAAGAGGGAGACATGGAGACACGTGTTATCTTTATCG AAGACCGGCTCCAAACCCTCCTAGGCATCTTAGACCATCCTTCTCCCGAC GTACGCGACCGAGCGGATCTACTCTTGGCAGGCTGGGGTTACAACACAGC CGAAGAACGCGCGGTGGCCGCGTCCCACCCGTCCATCACCTACCTGGAAA CCGAGCAAGCGTTGCTCGACTATGTAAAGGAGCGACACAGAAATTTGTAA ATGAGGCCCCCGGCCCTGCCCAACGCGCGCCTTCTTTGGGCCTTCGACTT CGACGGTGTCTTGTGTCACTCTGCCAAGGAGTTGTGCTTGACAGGATGGG CTGCCGCCCAGGAGTTTTGGCCAAGTGAGACACAGACGTGGCCCAAAAGG CCCGGCCCCGCCACCCTCTCCTCCTTCTACCGAGTGCGACCCGTGGTTGA GACGGGCTGGGAGGTCATGCTCATCAACCGTGCACTGCAAGAGGGAGAGT ACTCTGCCGACACCATCCTGAAGGAGTATACGGCTTCCCTTCGCGAGTCC CTCATGAAGGAATACGGCGGTCATGCTCCAGAAGCCTATATGGACACTTT TCGGTCCGTTCGACAGGCGTGGATGACTAGAGATGAGAGGGGCTGGCTCA GCGAGAACGATTTCTACCCCACTGCCGTTTCCAGCATTAAGCACCTCCTC TCCTCCCATCCTCCTTCCTCCCCATCTACGTACATCGTCACTACGAAGGG GAAGGAGTTCACCTTAAAGCTGCTGGAGGGGATGGGGGTGGCAATGCCAG AATCATGTGTCTTTGGTTTGGGCAGCGGGAAGAAAGTGGATGTGTTGCAG CAGCTTTTGGACAAGTATGATGCAGAGAGCAAGGCCAGAGAGGGCAAGGA GAAAAAGGAAGCCAAAGAGGGAGACATGGAGACACGTGTTATCTTTATCG AAGACCGGCTCCAAACCCTCCTAGGCATCTTAGACCATCCTTCTCCCGAC GTACGCGACCGAGCGGATCTACTCTTGGCAGGCTGGGGTTACAACACAGC CGAAGAACGCGCGGTGGCCGCGTCCCACCCGTCCATCACCTACCTGGAAA CCGAGCAAGCGTTGCTCGACTATGTAAAGGAGCGACACAGAAATTTGTAA ATGAGGCCCCCGGCCCTGCCCAACGCGCGCCTTCTTTGGGCCTTCGACTT CGACGGTGTCTTGTGTCACTCTGCCAAGGAGTTGTGCTTGACAGGATGGG CTGCCGCCCAGGAGTTTTGGCCAAGTGAGACACAGACGTGGCCCAAAAGG CCCGGCCCCGCCACCCTCTCCTCCTTCTACCGAGTGCGACCCGTGGTTGA GACGGGCTGGGAGGTCATGCTCATCAACCGTGCACTGCAAGAGGGAGAGT ACTCTGCCGACACCATCCTGAAGGAGTATACGGCTTCCCTTCGCGAGTCC CTCATGAAGGAATACGGCGGTCATGCTCCAGAAGCCTATATGGACACTTT TCGGTCCGTTCGACAGGCGTGGATGACTAGAGATGAGAGGGGCTGGCTCA GCGAGAACGATTTCTACCCCACTGCCGTTTCCAGCATTAAGCACCTCCTC TCCTCCCATCCTCCTTCCTCCCCATCTACGTACATCGTCACTACGAAGGG GAAGGAGTTCACCTTAAAGCTGCTGGAGGGGATGGGGGTGGCAATGCCAG AATCATGTGTCTTTGGTTTGGGCAGCGGGAAGAAAGTGGATGTGTTGCAG CAGCTTTTGGACAAGTATGATGCAGAGAGCAAGGCCAGAGAGGGCAAGGA GAAAAAGGAAGCCAAAGAGGGAGACATGGAGACACGTGTTATCTTTATCG AAGACCGGCTCCAAACCCTCCTAGGCATCTTAGACCATCCTTCTCCCGAC GTACGCGACCGAGCGGATCTACTCTTGGCAGGCTGGGGTTACAACACAGC CGAAGAACGCGCGGTGGCCGCGTCCCACCCGTCCATCACCTACCTGGAAA CCGAGCAAGCGTTGCTCGACTATGTAAAGGAGCGACACAGAAATTTGTAA ATGAGGCCCCCGGCCCTGCCCAACGCGCGCCTTCTTTGGGCCTTCGACTT CGACGGTGTCTTGTGTCACTCTGCCAAGGAGTTGTGCTTGACAGGATGGG CTGCCGCCCAGGAGTTTTGGCCAAGTGAGACACAGACGTGGCCCAAAAGG CCCGGCCCCGCCACCCTCTCCTCCTTCTACCGAGTGCGACCCGTGGTTGA GACGGGCTGGGAGGTCATGCTCATCAACCGTGCACTGCAAGAGGGAGAGT ACTCTGCCGACACCATCCTGAAGGAGTATACGGCTTCCCTTCGCGAGTCC CTCATGAAGGAATACGGCGGTCATGCTCCAGAAGCCTATATGGACACTTT TCGGTCCGTTCGACAGGCGTGGATGACTAGAGATGAGAGGGGCTGGCTCA GCGAGAACGATTTCTACCCCACTGCCGTTTCCAGCATTAAGCACCTCCTC TCCTCCCATCCTCCTTCCTCCCCATCTACGTACATCGTCACTACGAAGGG GAAGGAGTTCACCTTAAAGCTGCTGGAGGGGATGGGGGTGGCAATGCCAG AATCATGTGTCTTTGGTTTGGGCAGCGGGAAGAAAGTGGATGTGTTGCAG CAGCTTTTGGACAAGTATGATGCAGAGAGCAAGGCCAGAGAGGGCAAGGA GAAAAAGGAAGCCAAAGAGGGAGACATGGAGACACGTGTTATCTTTATCG AAGACCGGCTCCAAACCCTCCTAGGCATCTTAGACCATCCTTCTCCCGAC GTACGCGACCGAGCGGATCTACTCTTGGCAGGCTGGGGTTACAACACAGC CGAAGAACGCGCGGTGGCCGCGTCCCACCCGTCCATCACCTACCTGGAAA CCGAGCAAGCGTTGCTCGACTATGTAAAGGAGCGACACAGAAATTTGTAA ATGAGGCCCCCGGCCCTGCCCAACGCGCGCCTTCTTTGGGCCTTCGACTT CGACGGTGTCTTGTGTCACTCTGCCAAGGAGTTGTGCTTGACAGGATGGG CTGCCGCCCAGGAGTTTTGGCCAAGTGAGACACAGACGTGGCCCAAAAGG CCCGGCCCCGCCACCCTCTCCTCCTTCTACCGAGTGCGACCCGTGGTTGA GACGGGCTGGGAGGTCATGCTCATCAACCGTGCACTGCAAGAGGGAGAGT ACTCTGCCGACACCATCCTGAAGGAGTATACGGCTTCCCTTCGCGAGTCC CTCATGAAGGAATACGGCGGTCATGCTCCAGAAGCCTATATGGACACTTT TCGGTCCGTTCGACAGGCGTGGATGACTAGAGATGAGAGGGGCTGGCTCA GCGAGAACGATTTCTACCCCACTGCCGTTTCCAGCATTAAGCACCTCCTC TCCTCCCATCCTCCTTCCTCCCCATCTACGTACATCGTCACTACGAAGGG GAAGGAGTTCACCTTAAAGCTGCTGGAGGGGATGGGGGTGGCAATGCCAG AATCATGTGTCTTTGGTTTGGGCAGCGGGAAGAAAGTGGATGTGTTGCAG CAGCTTTTGGACAAGTATGATGCAGAGAGCAAGGCCAGAGAGGGCAAGGA GAAAAAGGAAGCCAAAGAGGGAGACATGGAGACACGTGTTATCTTTATCG AAGACCGGCTCCAAACCCTCCTAGGCATCTTAGACCATCCTTCTCCCGAC GTACGCGACCGAGCGGATCTACTCTTGGCAGGCTGGGGTTACAACACAGC CGAAGAACGCGCGGTGGCCGCGTCCCACCCGTCCATCACCTACCTGGAAA CCGAGCAAGCGTTGCTCGACTATGTAAAGGAGCGACACAGAAATTTGTAA ATGAGGCCCCCGGCCCTGCCCAACGCGCGCCTTCTTTGGGCCTTCGACTT CGACGGTGTCTTGTGTCACTCTGCCAAGGAGTTGTGCTTGACAGGATGGG CTGCCGCCCAGGAGTTTTGGCCAAGTGAGACACAGACGTGGCCCAAAAGG CCCGGCCCCGCCACCCTCTCCTCCTTCTACCGAGTGCGACCCGTGGTTGA GACGGGCTGGGAGGTCATGCTCATCAACCGTGCACTGCAAGAGGGAGAGT ACTCTGCCGACACCATCCTGAAGGAGTATACGGCTTCCCTTCGCGAGTCC CTCATGAAGGAATACGGCGGTCATGCTCCAGAAGCCTATATGGACACTTT TCGGTCCGTTCGACAGGCGTGGATGACTAGAGATGAGAGGGGCTGGCTCA GCGAGAACGATTTCTACCCCACTGCCGTTTCCAGCATTAAGCACCTCCTC TCCTCCCATCCTCCTTCCTCCCCATCTACGTACATCGTCACTACGAAGGG GAAGGAGTTCACCTTAAAGCTGCTGGAGGGGATGGGGGTGGCAATGCCAG AATCATGTGTCTTTGGTTTGGGCAGCGGGAAGAAAGTGGATGTGTTGCAG CAGCTTTTGGACAAGTATGATGCAGAGAGCAAGGCCAGAGAGGGCAAGGA GAAAAAGGAAGCCAAAGAGGGAGACATGGAGACACGTGTTATCTTTATCG AAGACCGGCTCCAAACCCTCCTAGGCATCTTAGACCATCCTTCTCCCGAC GTACGCGACCGAGCGGATCTACTCTTGGCAGGCTGGGGTTACAACACAGC CGAAGAACGCGCGGTGGCCGCGTCCCACCCGTCCATCACCTACCTGGAAA CCGAGCAAGCGTTGCTCGACTATGTAAAGGAGCGACACAGAAATTTGTAA ATGAGGCCCCCGGCCCTGCCCAACGCGCGCCTTCTTTGGGCCTTCGACTT CGACGGTGTCTTGTGTCACTCTGCCAAGGAGTTGTGCTTGACAGGATGGG CTGCCGCCCAGGAGTTTTGGCCAAGTGAGACACAGACGTGGCCCAAAAGG CCCGGCCCCGCCACCCTCTCCTCCTTCTACCGAGTGCGACCCGTGGTTGA GACGGGCTGGGAGGTCATGCTCATCAACCGTGCACTGCAAGAGGGAGAGT ACTCTGCCGACACCATCCTGAAGGAGTATACGGCTTCCCTTCGCGAGTCC CTCATGAAGGAATACGGCGGTCATGCTCCAGAAGCCTATATGGACACTTT TCGGTCCGTTCGACAGGCGTGGATGACTAGAGATGAGAGGGGCTGGCTCA GCGAGAACGATTTCTACCCCACTGCCGTTTCCAGCATTAAGCACCTCCTC TCCTCCCATCCTCCTTCCTCCCCATCTACGTACATCGTCACTACGAAGGG GAAGGAGTTCACCTTAAAGCTGCTGGAGGGGATGGGGGTGGCAATGCCAG AATCATGTGTCTTTGGTTTGGGCAGCGGGAAGAAAGTGGATGTGTTGCAG CAGCTTTTGGACAAGTATGATGCAGAGAGCAAGGCCAGAGAGGGCAAGGA GAAAAAGGAAGCCAAAGAGGGAGACATGGAGACACGTGTTATCTTTATCG AAGACCGGCTCCAAACCCTCCTAGGCATCTTAGACCATCCTTCTCCCGAC GTACGCGACCGAGCGGATCTACTCTTGGCAGGCTGGGGTTACAACACAGC CGAAGAACGCGCGGTGGCCGCGTCCCACCCGTCCATCACCTACCTGGAAA CCGAGCAAGCGTTGCTCGACTATGTAAAGGAGCGACACAGAAATTTGTAA back to top
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