scaffold_63, scaffold_63 (supercontig) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	scaffold_63
Unique Name	scaffold_63
Type	supercontig
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	83058
Alignment location	jgi.p\|Nanoce1779_2\|612336:62667..64737 +
Alignment location	jgi.p\|Nanoce1779_2\|612336:62667..64737 +
Alignment location	CDS_10428:63950..64171 +
Alignment location	jgi.p\|Nanoce1779_2\|612341:64880..67317 -
Alignment location	jgi.p\|Nanoce1779_2\|612341:64880..67317 -
Alignment location	CDS_10430:67009..67302 -
Alignment location	jgi.p\|Nanoce1779_2\|612349:71104..73881 +
Alignment location	jgi.p\|Nanoce1779_2\|612349:71104..73881 +
Alignment location	CDS_10432:71166..71344 +
Alignment location	CDS_10432:71530..71638 +
Alignment location	CDS_10432:71858..71964 +
Alignment location	CDS_10432:72141..72228 +
Alignment location	CDS_10432:72363..72442 +
Alignment location	CDS_10432:72811..72879 +
Alignment location	CDS_10432:73020..73161 +
Alignment location	jgi.p\|Nanoce1779_2\|612366:74688..76495 +
Alignment location	jgi.p\|Nanoce1779_2\|612366:74688..76495 +
Alignment location	CDS_10433:74730..75681 +
Alignment location	CDS_10433:75858..75880 +
Alignment location	jgi.p\|Nanoce1779_2\|612372:80675..82724 -
Alignment location	jgi.p\|Nanoce1779_2\|612372:80675..82724 -
Alignment location	CDS_10435:81050..82337 -
Alignment location	jgi.p\|Nanoce1779_2\|634247:67401..69589 +
Alignment location	jgi.p\|Nanoce1779_2\|634247:67401..69589 +
Alignment location	CDS_10431:67921..68016 +
Alignment location	CDS_10431:68128..68229 +
Alignment location	CDS_10431:68400..68469 +
Alignment location	CDS_10431:68642..68766 +
Alignment location	CDS_10431:68986..69156 +
Alignment location	jgi.p\|Nanoce1779_2\|674950:76462..82723 +
Alignment location	jgi.p\|Nanoce1779_2\|674950:76462..82723 +
Alignment location	CDS_10434:76584..76621 +
Alignment location	CDS_10434:76805..76955 +
Alignment location	CDS_10434:77085..77273 +
Alignment location	CDS_10434:77380..77475 +
Alignment location	CDS_10434:77683..77775 +
Alignment location	CDS_10434:77900..77997 +
Alignment location	CDS_10434:78203..78389 +
Alignment location	CDS_10434:78532..78648 +
Alignment location	CDS_10434:78810..78915 +
Alignment location	CDS_10434:79124..79245 +
Alignment location	CDS_10434:79381..79476 +
Alignment location	CDS_10434:79640..79768 +
Alignment location	CDS_10434:79911..80111 +
Alignment location	CDS_10434:80283..80846 +
Alignment location	jgi.p\|Nanoce1779_2\|612336:63950..64171 +
Alignment location	jgi.p\|Nanoce1779_2\|612341:67009..67302 -
Alignment location	jgi.p\|Nanoce1779_2\|612349:71166..73161 +
Alignment location	jgi.p\|Nanoce1779_2\|612366:74730..75880 +
Alignment location	jgi.p\|Nanoce1779_2\|612372:81050..82337 -
Alignment location	jgi.p\|Nanoce1779_2\|634247:67921..69156 +
Alignment location	jgi.p\|Nanoce1779_2\|674950:76584..80846 +
Alignment location	ncniL012:64881..82724 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
jgi.p\|Nanoce1779_2\|612336	gene	jgi.p\|Nanoce1779_2\|612336:62667..64737 +
jgi.p\|Nanoce1779_2\|612336	mRNA	jgi.p\|Nanoce1779_2\|612336:62667..64737 +
CDS_10428	CDS	CDS_10428:63950..64171 +
jgi.p\|Nanoce1779_2\|612341	gene	jgi.p\|Nanoce1779_2\|612341:64880..67317 -
jgi.p\|Nanoce1779_2\|612341	mRNA	jgi.p\|Nanoce1779_2\|612341:64880..67317 -
CDS_10430	CDS	CDS_10430:67009..67302 -
jgi.p\|Nanoce1779_2\|612349	gene	jgi.p\|Nanoce1779_2\|612349:71104..73881 +
jgi.p\|Nanoce1779_2\|612349	mRNA	jgi.p\|Nanoce1779_2\|612349:71104..73881 +
CDS_10432	CDS	CDS_10432:71166..71344 +
CDS_10432	CDS	CDS_10432:71530..71638 +
CDS_10432	CDS	CDS_10432:71858..71964 +
CDS_10432	CDS	CDS_10432:72141..72228 +
CDS_10432	CDS	CDS_10432:72363..72442 +
CDS_10432	CDS	CDS_10432:72811..72879 +
CDS_10432	CDS	CDS_10432:73020..73161 +
jgi.p\|Nanoce1779_2\|612366	gene	jgi.p\|Nanoce1779_2\|612366:74688..76495 +
jgi.p\|Nanoce1779_2\|612366	mRNA	jgi.p\|Nanoce1779_2\|612366:74688..76495 +
CDS_10433	CDS	CDS_10433:74730..75681 +
CDS_10433	CDS	CDS_10433:75858..75880 +
jgi.p\|Nanoce1779_2\|612372	gene	jgi.p\|Nanoce1779_2\|612372:80675..82724 -
jgi.p\|Nanoce1779_2\|612372	mRNA	jgi.p\|Nanoce1779_2\|612372:80675..82724 -
CDS_10435	CDS	CDS_10435:81050..82337 -
jgi.p\|Nanoce1779_2\|634247	gene	jgi.p\|Nanoce1779_2\|634247:67401..69589 +
jgi.p\|Nanoce1779_2\|634247	mRNA	jgi.p\|Nanoce1779_2\|634247:67401..69589 +
CDS_10431	CDS	CDS_10431:67921..68016 +
CDS_10431	CDS	CDS_10431:68128..68229 +
CDS_10431	CDS	CDS_10431:68400..68469 +
CDS_10431	CDS	CDS_10431:68642..68766 +
CDS_10431	CDS	CDS_10431:68986..69156 +
jgi.p\|Nanoce1779_2\|674950	gene	jgi.p\|Nanoce1779_2\|674950:76462..82723 +
jgi.p\|Nanoce1779_2\|674950	mRNA	jgi.p\|Nanoce1779_2\|674950:76462..82723 +
CDS_10434	CDS	CDS_10434:76584..76621 +
CDS_10434	CDS	CDS_10434:76805..76955 +
CDS_10434	CDS	CDS_10434:77085..77273 +
CDS_10434	CDS	CDS_10434:77380..77475 +
CDS_10434	CDS	CDS_10434:77683..77775 +
CDS_10434	CDS	CDS_10434:77900..77997 +
CDS_10434	CDS	CDS_10434:78203..78389 +
CDS_10434	CDS	CDS_10434:78532..78648 +
CDS_10434	CDS	CDS_10434:78810..78915 +
CDS_10434	CDS	CDS_10434:79124..79245 +
CDS_10434	CDS	CDS_10434:79381..79476 +
CDS_10434	CDS	CDS_10434:79640..79768 +
CDS_10434	CDS	CDS_10434:79911..80111 +
CDS_10434	CDS	CDS_10434:80283..80846 +
jgi.p\|Nanoce1779_2\|612336	polypeptide	jgi.p\|Nanoce1779_2\|612336:63950..64171 +
jgi.p\|Nanoce1779_2\|612341	polypeptide	jgi.p\|Nanoce1779_2\|612341:67009..67302 -
jgi.p\|Nanoce1779_2\|612349	polypeptide	jgi.p\|Nanoce1779_2\|612349:71166..73161 +
jgi.p\|Nanoce1779_2\|612366	polypeptide	jgi.p\|Nanoce1779_2\|612366:74730..75880 +
jgi.p\|Nanoce1779_2\|612372	polypeptide	jgi.p\|Nanoce1779_2\|612372:81050..82337 -
jgi.p\|Nanoce1779_2\|634247	polypeptide	jgi.p\|Nanoce1779_2\|634247:67921..69156 +
jgi.p\|Nanoce1779_2\|674950	polypeptide	jgi.p\|Nanoce1779_2\|674950:76584..80846 +
ncniL012	syntenic_region	ncniL012:64881..82724 +

Analyses

This supercontig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gennome assembly for N. oceanica CCMP1779	2018-02-01

Annotated Terms

Homology

Relationships

Sequences

Synonyms

Publications