jgi.p|Nanoce1779_2|612366, mRNA_10433 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|612366
Unique NamemRNA_10433
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1632
Alignment locationscaffold_63:74688..76495 +

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Properties
Property NameValue
TranscriptId612452
TrackFilteredModels2
ProteinId612366
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:74688..76495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612366gene_10433Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612366mRNA_10433-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10433CDS_10433Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10433 ID=mRNA_10433|Name=jgi.p|Nanoce1779_2|612366|organism=Nannochloropsis oceanica|type=mRNA|length=1632bp
ACAGCGCCTCACATCGTACCCTCCAACGCGGCACCGCAAAGTATGGGATG
GTGGCGGGATCTGTTCCGCCGATCCAGCAGCAGCCGGCGTGGAATCCTTA
ACTTTGGCAGCGCTGAAATACAACAGCAACCCTCTCCACCGTCGCAGCCA
CTACAACAACAGCTTCCACCTCTGCAGCTCGAGGAGGGTGGGCGCAGTTT
CTTGCTGCCGCCCCCACACATCACGTTCAGCACCCATCCGATGCCTAATG
ACATCAGTAGTAAGAAAAATGAAAATGATGAGGATGTGGTACTCGAGAGG
GATGATATCAATGAGGATGAACACTTCCCGTCGCCTGTCTCGTTCTCCGT
GTCCTCGAGCGTCCATTCGGTCGTCGACGGCATCAACGAGCGCCTGCACC
ACTTACCCAAATGGCAGTATCGGCTCTTGTGCGGAAGCTTGTGGCTTATC
CTCTTCCTCTTTGTTATCCTGCTTACAGTTTCCATCATCTATGGCTTTGG
CCTCAAGAACGTCCACTTTTCCGTGACGGGCGTGACTCCCCTGGTCTCCA
CCTTGGCTGACACGCAGGGCAACGTCCCTCTCCGCACCACCCTCAGCCTC
GACAATCCCAATATCTTCCCCATTACTGCATCACCCACTACCACAACCAT
CTCATACATTGACAGAACCAATGAAACGCGGACACTCTATCCTCTCGTCA
GAGCTCCGGTGCCACGCATCTACCTCCACTCCCACGAGGAAGGCCATATT
ATCTACTCCGACTTGATTTTTAAAAATCTTGGAAAGCTTCCTGGGGGTCC
TGAATTAATGACAGCAGTGCTCAAGGGCAACGCCACATTTCTAGATTTCA
CCACTACGCTGCGGCTACGTGTTAAAGCTTTGGGTTTTGTGCCTATTGTT
CGCGTTTTTCAAGTAGACTGCTATATATCCATTCTTTGGGGAGAACCAAC
CAGGCGGGACGGCAGCAAAGAAACAATCTCAGATTGCATGGGCACTGCTG
ATCTGATGCTCACTTGAAGTGTAAGTCTGATTTCTGCTTGTGTTTCCTCA
ATTTATTTTACTTGCGCCACTTATTATCCAGGTAACCCTAACCCTAACCC
TAATACCCCATTCAGACGTTTATGTGCCCATGCACTAAACTCATGGGGCA
GAGCAAAAAAGAGGAAGATGCAAGTGTAAAATGAATAAGATAAACTTGTG
AACGCAGTACATGTCTTGAAAATAAGTCAGAAGTGCAATTGTGCAGGGCC
ACCGTTGCTTAGGTTTGGCAGTTTAGTCGGACGCCGGAAATGCTCCTGAA
GCATGTTGTATGGCGGCGAGAGCCATTCAAAAAAAAATAAATCAGGACGG
CCACATATGTTAGGGCTGAGCGTCGTGGTGTTGATCAGCCAATCTCATTC
TGGTGAGGTAGGCATAGCTTTTCCCATCTTTCTTCAGAATCCGTCCTGGG
TTAAGGGAAGTGAAGCATAAAGTAATGAACAAACGCAATGAGATTCGGTC
CGCAGGACCCCCCTATATGTTCATGCCACTTGTGCTTGCTACACTATGGG
CACAATTACCGCAACAAGTCAGATATGATGACCACCACTCCTGAAACAAA
CAGGCACAGACGCGGCTGACGGCCAGGGCATC
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protein sequence of jgi.p|Nanoce1779_2|612366

>mRNA_10433-protein ID=mRNA_10433-protein|Name=jgi.p|Nanoce1779_2|612366|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MGWWRDLFRRSSSSRRGILNFGSAEIQQQPSPPSQPLQQQLPPLQLEEGG
RSFLLPPPHITFSTHPMPNDISSKKNENDEDVVLERDDINEDEHFPSPVS
FSVSSSVHSVVDGINERLHHLPKWQYRLLCGSLWLILFLFVILLTVSIIY
GFGLKNVHFSVTGVTPLVSTLADTQGNVPLRTTLSLDNPNIFPITASPTT
TTISYIDRTNETRTLYPLVRAPVPRIYLHSHEEGHIIYSDLIFKNLGKLP
GGPELMTAVLKGNATFLDFTTTLRLRVKALGFVPIVRVFQVDCYISILWG
EPTRRDGSKETISDCMGTADLMLT*
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mRNA from alignment at scaffold_63:74688..76495+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10433 ID=mRNA_10433|Name=jgi.p|Nanoce1779_2|612366|organism=Nannochloropsis oceanica|type=mRNA|length=1808bp|location=Sequence derived from alignment at scaffold_63:74688..76495+ (Nannochloropsis oceanica)
ACAGCGCCTCACATCGTACCCTCCAACGCGGCACCGCAAAGTATGGGATG
GTGGCGGGATCTGTTCCGCCGATCCAGCAGCAGCCGGCGTGGAATCCTTA
ACTTTGGCAGCGCTGAAATACAACAGCAACCCTCTCCACCGTCGCAGCCA
CTACAACAACAGCTTCCACCTCTGCAGCTCGAGGAGGGTGGGCGCAGTTT
CTTGCTGCCGCCCCCACACATCACGTTCAGCACCCATCCGATGCCTAATG
ACATCAGTAGTAAGAAAAATGAAAATGATGAGGATGTGGTACTCGAGAGG
GATGATATCAATGAGGATGAACACTTCCCGTCGCCTGTCTCGTTCTCCGT
GTCCTCGAGCGTCCATTCGGTCGTCGACGGCATCAACGAGCGCCTGCACC
ACTTACCCAAATGGCAGTATCGGCTCTTGTGCGGAAGCTTGTGGCTTATC
CTCTTCCTCTTTGTTATCCTGCTTACAGTTTCCATCATCTATGGCTTTGG
CCTCAAGAACGTCCACTTTTCCGTGACGGGCGTGACTCCCCTGGTCTCCA
CCTTGGCTGACACGCAGGGCAACGTCCCTCTCCGCACCACCCTCAGCCTC
GACAATCCCAATATCTTCCCCATTACTGCATCACCCACTACCACAACCAT
CTCATACATTGACAGAACCAATGAAACGCGGACACTCTATCCTCTCGTCA
GAGCTCCGGTGCCACGCATCTACCTCCACTCCCACGAGGAAGGCCATATT
ATCTACTCCGACTTGATTTTTAAAAATCTTGGAAAGCTTCCTGGGGGTCC
TGAATTAATGACAGCAGTGCTCAAGGGCAACGCCACATTTCTAGATTTCA
CCACTACGCTGCGGCTACGTGTTAAAGCTTTGGGTTTTGTGCCTATTGTT
CGCGTTTTTCAAGTAGACTGCTATATATCCATTCTTTGGGGAGAACCAAC
CAGGCGGGACGGCAGCAAAGAAACAATCTCAGATTGCATGGGCACTTTTT
TGTAACGATGAGAAGGAGTAAGATGAGATAAAGTGCGGTAAAATTTATGA
GGTTAAGGATGTCAAGTTGAGGCGACATGTAATAGATGGAAAACATCCAA
TAGCATGTACCTTTTTGTGTAGTTGCCCACCTGGCGCAGAAAAAGGTGCA
GTGATACATGGAGCACCTACCTGCTGATCTGATGCTCACTTGAAGTGTAA
GTCTGATTTCTGCTTGTGTTTCCTCAATTTATTTTACTTGCGCCACTTAT
TATCCAGGTAACCCTAACCCTAACCCTAATACCCCATTCAGACGTTTATG
TGCCCATGCACTAAACTCATGGGGCAGAGCAAAAAAGAGGAAGATGCAAG
TGTAAAATGAATAAGATAAACTTGTGAACGCAGTACATGTCTTGAAAATA
AGTCAGAAGTGCAATTGTGCAGGGCCACCGTTGCTTAGGTTTGGCAGTTT
AGTCGGACGCCGGAAATGCTCCTGAAGCATGTTGTATGGCGGCGAGAGCC
ATTCAAAAAAAAATAAATCAGGACGGCCACATATGTTAGGGCTGAGCGTC
GTGGTGTTGATCAGCCAATCTCATTCTGGTGAGGTAGGCATAGCTTTTCC
CATCTTTCTTCAGAATCCGTCCTGGGTTAAGGGAAGTGAAGCATAAAGTA
ATGAACAAACGCAATGAGATTCGGTCCGCAGGACCCCCCTATATGTTCAT
GCCACTTGTGCTTGCTACACTATGGGCACAATTACCGCAACAAGTCAGAT
ATGATGACCACCACTCCTGAAACAAACAGGCACAGACGCGGCTGACGGCC
AGGGCATC
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Coding sequence (CDS) from alignment at scaffold_63:74688..76495+

>mRNA_10433 ID=mRNA_10433|Name=jgi.p|Nanoce1779_2|612366|organism=Nannochloropsis oceanica|type=CDS|length=1950bp|location=Sequence derived from alignment at scaffold_63:74688..76495+ (Nannochloropsis oceanica)
ATGGGATGGTGGCGGGATCTGTTCCGCCGATCCAGCAGCAGCCGGCGTGG
AATCCTTAACTTTGGCAGCGCTGAAATACAACAGCAACCCTCTCCACCGT
CGCAGCCACTACAACAACAGCTTCCACCTCTGCAGCTCGAGGAGGGTGGG
CGCAGTTTCTTGCTGCCGCCCCCACACATCACGTTCAGCACCCATCCGAT
GCCTAATGACATCAGTAGTAAGAAAAATGAAAATGATGAGGATGTGGTAC
TCGAGAGGGATGATATCAATGAGGATGAACACTTCCCGTCGCCTGTCTCG
TTCTCCGTGTCCTCGAGCGTCCATTCGGTCGTCGACGGCATCAACGAGCG
CCTGCACCACTTACCCAAATGGCAGTATCGGCTCTTGTGCGGAAGCTTGT
GGCTTATCCTCTTCCTCTTTGTTATCCTGCTTACAGTTTCCATCATCTAT
GGCTTTGGCCTCAAGAACGTCCACTTTTCCGTGACGGGCGTGACTCCCCT
GGTCTCCACCTTGGCTGACACGCAGGGCAACGTCCCTCTCCGCACCACCC
TCAGCCTCGACAATCCCAATATCTTCCCCATTACTGCATCACCCACTACC
ACAACCATCTCATACATTGACAGAACCAATGAAACGCGGACACTCTATCC
TCTCGTCAGAGCTCCGGTGCCACGCATCTACCTCCACTCCCACGAGGAAG
GCCATATTATCTACTCCGACTTGATTTTTAAAAATCTTGGAAAGCTTCCT
GGGGGTCCTGAATTAATGACAGCAGTGCTCAAGGGCAACGCCACATTTCT
AGATTTCACCACTACGCTGCGGCTACGTGTTAAAGCTTTGGGTTTTGTGC
CTATTGTTCGCGTTTTTCAAGTAGACTGCTATATATCCATTCTTTGGGGA
GAACCAACCAGGCGGGACGGCAGCAAAGAAACAATCTCAGATTGCATGGG
CACTGCTGATCTGATGCTCACTTGAATGGGATGGTGGCGGGATCTGTTCC
GCCGATCCAGCAGCAGCCGGCGTGGAATCCTTAACTTTGGCAGCGCTGAA
ATACAACAGCAACCCTCTCCACCGTCGCAGCCACTACAACAACAGCTTCC
ACCTCTGCAGCTCGAGGAGGGTGGGCGCAGTTTCTTGCTGCCGCCCCCAC
ACATCACGTTCAGCACCCATCCGATGCCTAATGACATCAGTAGTAAGAAA
AATGAAAATGATGAGGATGTGGTACTCGAGAGGGATGATATCAATGAGGA
TGAACACTTCCCGTCGCCTGTCTCGTTCTCCGTGTCCTCGAGCGTCCATT
CGGTCGTCGACGGCATCAACGAGCGCCTGCACCACTTACCCAAATGGCAG
TATCGGCTCTTGTGCGGAAGCTTGTGGCTTATCCTCTTCCTCTTTGTTAT
CCTGCTTACAGTTTCCATCATCTATGGCTTTGGCCTCAAGAACGTCCACT
TTTCCGTGACGGGCGTGACTCCCCTGGTCTCCACCTTGGCTGACACGCAG
GGCAACGTCCCTCTCCGCACCACCCTCAGCCTCGACAATCCCAATATCTT
CCCCATTACTGCATCACCCACTACCACAACCATCTCATACATTGACAGAA
CCAATGAAACGCGGACACTCTATCCTCTCGTCAGAGCTCCGGTGCCACGC
ATCTACCTCCACTCCCACGAGGAAGGCCATATTATCTACTCCGACTTGAT
TTTTAAAAATCTTGGAAAGCTTCCTGGGGGTCCTGAATTAATGACAGCAG
TGCTCAAGGGCAACGCCACATTTCTAGATTTCACCACTACGCTGCGGCTA
CGTGTTAAAGCTTTGGGTTTTGTGCCTATTGTTCGCGTTTTTCAAGTAGA
CTGCTATATATCCATTCTTTGGGGAGAACCAACCAGGCGGGACGGCAGCA
AAGAAACAATCTCAGATTGCATGGGCACTGCTGATCTGATGCTCACTTGA
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Synonyms
Publications