jgi.p|Nanoce1779_2|612336, mRNA_10428 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|612336
Unique Name	mRNA_10428
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2071
Alignment location	scaffold_63:62667..64737 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	612422
Track	FilteredModels2
ProteinId	612336

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_63	supercontig	scaffold_63:62667..64737 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612336	gene_10428	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612336	mRNA_10428-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10428	CDS_10428	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_63:62667..64737+
coding sequence from alignment at scaffold_63:62667..64737+

mRNA sequence

>mRNA_10428 ID=mRNA_10428|Name=jgi.p|Nanoce1779_2|612336|organism=Nannochloropsis oceanica|type=mRNA|length=2071bp
GGAACTTTCCAACGGCTGTTTGGACACGGTTGTGTCGGATGCCTTCGTTG
GAGACTAGTAAACAGGAATTATTGTGACGACGGCAGCATAAGAGTCAATT
CTCAATCATTCTTCGATTGCTGTGATACTGAAATGGAGATATCAGATAAT
TCTTCTCCGTGAATTATCGTAGTGACTTGTTAATCTGTAAAATCTCCTGC
GCCCCTACTACTATAACTCAAAGGTCTTAAGAATTCCCTCTCTCCACTCT
GAACTGGGACAGTGAAGGAAAAGCACAGTCTGGTACAAAGACGTTTACGC
CGTTGTAGACGGCAGGAGTAAATGAGAATGAACAAGTTATGGGGATGAGT
GATGTGGGACTCGATATTAATAATTGTTACTTCCGCCAAACTCCTGGAAA
ACGAGGAGGAGTGAATTACCCATCTGTCTACCCCTTACTACTACTACCTT
ACAGCTTCTACCAGGAACTGCCACTAGTGCTGCTGTAGCCGCCTGTACCT
CATAGGACACTTGTTGTCTGTCCTTGCCTTCGTACGGCAGTTTGGACCAC
GGGCCCACTACCTTTTTTCGTAAGCCGCACTGTCCCACCCGATTCGACCG
CTGTAAGAAACCGACTCAAGCACAGCCTGATAAAACACGGTACACAAGCA
CGGCTTCCCTGTCGAGTTCGAAGCTCAAAACATAAAAGTTCTCTTTATCG
TGATCCAAACTGCCGTACCAAGGCAAAGGCAGGCAACATGTGTTGCCTGG
TGCCCTGTGCACATTTTTGAAGGGGGATCGTAAAGCAAAGTGGGGGATGG
GGGGTAGGGGAAACGCCCGCGTAGAACAAATACAGGTTTCATATGCGCTT
TTAAACAATCTTTAGGTTCTATTCAATGTCTAGCATTTGAGGGCAGCAAA
TTTCTCTTGCAAGTATAGACGTAATTTTCGCATGTGGTGAATGGACCGGC
CCTGTGGAATTTCGCGTGTTCGATGGAGGAAATTTCTGGGCGCGAGATTT
CGACAGCGACGGCGCCCACAGCACGTGAAATCTTTGTGGAGAGGGTGCAT
GCTCCAAAAAGGATTTTTCCTTAAACACATCCCGTGCTTACAATGCTTCT
TGAACTTTTCCCTTCACAATGTTCTCCCTTATGTTCCTTTCATATTCGCC
GCAGGCAGCTAGGTAGCCGACTCAAAACAAAAATTCTAGGCTTGAAGGAA
CAGAGCATCACGTATCGAGTATTTCAGGCGACGTGATACACTAGTACACA
AGGGCTACGACAAATTCGAGATCTCGAATAAATATGGCCGACAGTTCCCT
CTGGTCCCTCCTGATCCTCATTTTGTTGATCGTTGCGGACGTCATAGCAG
TTTCTAAGGTCTGCCGCAGCGGCTGTTCGACTTTGGTCAAGGTGTTGTGG
ACACTGCTTATCTTCTTTTTCCCTGTGGGGGGGCTTTTAATCTGGTTCTT
GTGTGGCCCTCGGGAGCATGGCGCGGCCCCGCCCGTGCAGACGCCGGTTG
GTTAGAGGGCTCGGGCGGAGTTTAAGAGTAGAGTTGAAAAGGGTTGGGAA
GGAAACCACAAAAATCGATGGGGGGAAAGATTATTAAAAAAAAATCAATC
ACGATTCACTGTCTTGTAACTGTTTTTAGAGCACGCAGGAGCAAAGCAAA
GAGCCCAGCCAGATGGACGTGTGCATGCTGGAGGAAACAGAACTCGCGTA
AAAACTAGGCACCGGTAAAAGTTGAGATAGAAATGTACAGAAGCGGATGA
AAGAGGGAAGACAAAGACGTGACTACAAAGACAGCGCAAGAGCAGCATTC
TAATGCCCCCCCCCCTTATTTCTCGATCGATGCAAAAGGAGGGAAGACGC
ATGGTGAGCCTTGTCTTCTTTTCTATTTTCTTCGTTCTGAGGATGACGAT
TGATTTTAAAGCATTGAAGTTGGAGGAGAAAGGTAAAGGAAAGAAAGAGA
GCGAAGGGAAAATATAACAAGGAAGTGAGATGCAAGAGCAGTGATTGACT
TATAAAAAAGAGGGCGAAAGAAGACAGGCCAATGCAAACAACCAAAGACA
ACGACCAAAATTAGTACTTAC

protein sequence of jgi.p|Nanoce1779_2|612336

>mRNA_10428-protein ID=mRNA_10428-protein|Name=jgi.p|Nanoce1779_2|612336|organism=Nannochloropsis oceanica|type=polypeptide|length=74bp
MADSSLWSLLILILLIVADVIAVSKVCRSGCSTLVKVLWTLLIFFFPVGG
LLIWFLCGPREHGAAPPVQTPVG*

mRNA from alignment at scaffold_63:62667..64737+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10428 ID=mRNA_10428|Name=jgi.p|Nanoce1779_2|612336|organism=Nannochloropsis oceanica|type=mRNA|length=2071bp|location=Sequence derived from alignment at scaffold_63:62667..64737+ (Nannochloropsis oceanica)
GGAACTTTCCAACGGCTGTTTGGACACGGTTGTGTCGGATGCCTTCGTTG
GAGACTAGTAAACAGGAATTATTGTGACGACGGCAGCATAAGAGTCAATT
CTCAATCATTCTTCGATTGCTGTGATACTGAAATGGAGATATCAGATAAT
TCTTCTCCGTGAATTATCGTAGTGACTTGTTAATCTGTAAAATCTCCTGC
GCCCCTACTACTATAACTCAAAGGTCTTAAGAATTCCCTCTCTCCACTCT
GAACTGGGACAGTGAAGGAAAAGCACAGTCTGGTACAAAGACGTTTACGC
CGTTGTAGACGGCAGGAGTAAATGAGAATGAACAAGTTATGGGGATGAGT
GATGTGGGACTCGATATTAATAATTGTTACTTCCGCCAAACTCCTGGAAA
ACGAGGAGGAGTGAATTACCCATCTGTCTACCCCTTACTACTACTACCTT
ACAGCTTCTACCAGGAACTGCCACTAGTGCTGCTGTAGCCGCCTGTACCT
CATAGGACACTTGTTGTCTGTCCTTGCCTTCGTACGGCAGTTTGGACCAC
GGGCCCACTACCTTTTTTCGTAAGCCGCACTGTCCCACCCGATTCGACCG
CTGTAAGAAACCGACTCAAGCACAGCCTGATAAAACACGGTACACAAGCA
CGGCTTCCCTGTCGAGTTCGAAGCTCAAAACATAAAAGTTCTCTTTATCG
TGATCCAAACTGCCGTACCAAGGCAAAGGCAGGCAACATGTGTTGCCTGG
TGCCCTGTGCACATTTTTGAAGGGGGATCGTAAAGCAAAGTGGGGGATGG
GGGGTAGGGGAAACGCCCGCGTAGAACAAATACAGGTTTCATATGCGCTT
TTAAACAATCTTTAGGTTCTATTCAATGTCTAGCATTTGAGGGCAGCAAA
TTTCTCTTGCAAGTATAGACGTAATTTTCGCATGTGGTGAATGGACCGGC
CCTGTGGAATTTCGCGTGTTCGATGGAGGAAATTTCTGGGCGCGAGATTT
CGACAGCGACGGCGCCCACAGCACGTGAAATCTTTGTGGAGAGGGTGCAT
GCTCCAAAAAGGATTTTTCCTTAAACACATCCCGTGCTTACAATGCTTCT
TGAACTTTTCCCTTCACAATGTTCTCCCTTATGTTCCTTTCATATTCGCC
GCAGGCAGCTAGGTAGCCGACTCAAAACAAAAATTCTAGGCTTGAAGGAA
CAGAGCATCACGTATCGAGTATTTCAGGCGACGTGATACACTAGTACACA
AGGGCTACGACAAATTCGAGATCTCGAATAAATATGGCCGACAGTTCCCT
CTGGTCCCTCCTGATCCTCATTTTGTTGATCGTTGCGGACGTCATAGCAG
TTTCTAAGGTCTGCCGCAGCGGCTGTTCGACTTTGGTCAAGGTGTTGTGG
ACACTGCTTATCTTCTTTTTCCCTGTGGGGGGGCTTTTAATCTGGTTCTT
GTGTGGCCCTCGGGAGCATGGCGCGGCCCCGCCCGTGCAGACGCCGGTTG
GTTAGAGGGCTCGGGCGGAGTTTAAGAGTAGAGTTGAAAAGGGTTGGGAA
GGAAACCACAAAAATCGATGGGGGGAAAGATTATTAAAAAAAAATCAATC
ACGATTCACTGTCTTGTAACTGTTTTTAGAGCACGCAGGAGCAAAGCAAA
GAGCCCAGCCAGATGGACGTGTGCATGCTGGAGGAAACAGAACTCGCGTA
AAAACTAGGCACCGGTAAAAGTTGAGATAGAAATGTACAGAAGCGGATGA
AAGAGGGAAGACAAAGACGTGACTACAAAGACAGCGCAAGAGCAGCATTC
TAATGCCCCCCCCCCTTATTTCTCGATCGATGCAAAAGGAGGGAAGACGC
ATGGTGAGCCTTGTCTTCTTTTCTATTTTCTTCGTTCTGAGGATGACGAT
TGATTTTAAAGCATTGAAGTTGGAGGAGAAAGGTAAAGGAAAGAAAGAGA
GCGAAGGGAAAATATAACAAGGAAGTGAGATGCAAGAGCAGTGATTGACT
TATAAAAAAGAGGGCGAAAGAAGACAGGCCAATGCAAACAACCAAAGACA
ACGACCAAAATTAGTACTTAC

Coding sequence (CDS) from alignment at scaffold_63:62667..64737+

>mRNA_10428 ID=mRNA_10428|Name=jgi.p|Nanoce1779_2|612336|organism=Nannochloropsis oceanica|type=CDS|length=222bp|location=Sequence derived from alignment at scaffold_63:62667..64737+ (Nannochloropsis oceanica)
ATGGCCGACAGTTCCCTCTGGTCCCTCCTGATCCTCATTTTGTTGATCGT
TGCGGACGTCATAGCAGTTTCTAAGGTCTGCCGCAGCGGCTGTTCGACTT
TGGTCAAGGTGTTGTGGACACTGCTTATCTTCTTTTTCCCTGTGGGGGGG
CTTTTAATCTGGTTCTTGTGTGGCCCTCGGGAGCATGGCGCGGCCCCGCC
CGTGCAGACGCCGGTTGGTTAG

Synonyms

Publications