jgi.p|Nanoce1779_2|612372, mRNA_10435 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|612372
Unique Name	mRNA_10435
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2050
Alignment location	scaffold_63:80675..82724 -

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Properties


Property Name	Value
TranscriptId	612458
Track	FilteredModels2
ProteinId	612372

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_63	supercontig	scaffold_63:80675..82724 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612372	gene_10435	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612372	mRNA_10435-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10435	CDS_10435	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_63:80675..82724-
coding sequence from alignment at scaffold_63:80675..82724-

mRNA sequence

>mRNA_10435 ID=mRNA_10435|Name=jgi.p|Nanoce1779_2|612372|organism=Nannochloropsis oceanica|type=mRNA|length=2050bp
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTC
CTCCTCCTCCACCGCCTGCGGACCTGCCGCCTACACCGTCTCCCCGCACA
GCCCTGAATTCGTCCCCGCGCTCTTCAGTCACCCCCTCCAAGATCCTACC
CCTCCCTCCTCCCTCCTCCCTCTCTCCCTTCCATCTCCCTTCCTCTCTCG
CGCAGACCTCCTTCAGGGTTGCCAGGCGCTGCGGGACAAGATTGCGACCT
TCGAGGTGCGCTTCAAGCGAGGGCATGGGGGAAGGTCGCCGAAGGGGGAG
GAGCGCCTGCCTCTGGCCTCCACGTATCATTTGTATCGGCAGTGGAAGCA
GGTGATCAGGGACAGGGCGGTCCAAGTCTTGCAGCGGATGGTAAGGCGGT
GGCTGGCAAGGGGCAGGAGGAAACTGGCACGAGTGAAGGGAGGGGCGACG
GCAGGACCAGCAAGTGTAGCTGCAGACTCTCTGCTTGCCTCTACCCCTCC
CGTGTCGGAGGTCGGCATCGTCAGCAAGAGCAGGCACAGCATCTTCGCCG
GCAAGGTCAACACTACATTTTCATCATCACCTGCAGCAAAGCAGAACCCC
TCGGATTCCTTGTCCTCATCATCCTCCCTCGCTGACTCTTTCCGGCCTTC
GTCCGAGCTTCAGGCACTGTTGGAGGAGAAGAAGAAGATCAAGAGGCGGC
TGAAGAACTTCGACGCCTCATTTCAAGCCAAGCACGGCCGGACCCCGAGC
AAGAAGGAGAAAGAGCCCGTGCGGAGCATCTACGAGAAGTACAACTGCCT
CAAAGGTCGGATCGCAGCCTTCGAGCAGAAGGACGAGAAGAAGAAGGCGC
TACTACTGCCGCGGGAGCGGGAGCGAGAGAGTAGCAGCAGCAGCAGCAGT
AGGATCAGCAGTCTTACCCGTCCCACGCTCGCCTCCGCCTCACGGACGCG
GATGACGGCAGCAAGGAGGGGGATAGAAAAGGAGGAGGGAGGTGTCGGAT
TGCCTCCGCAAAGTCCTCGGAGGAGCGGCAGCCCGACCAGCAGCTTTGCC
CTCTTCAGCATGCGCGACCAATCCAAGTCATTGTCGCGGACGTCGACGAT
GAGGATTAGCGGCAGCAACAAGAGCTGCACCGACGAAATGGGTTCAGCTT
CCCCTTCAAGCCCCATTGCTGTCGCGTCGTCAGCTGCCTGGGCTTTCCCT
TCACATGTGTTGTCGACTCCTCCTCCTCTTCCCCCCTCGTCCTCCTCCCG
CTCCATAAATCGCACTGCCCCCCATCTGCTCTTTGCGCAAATCCCAAACA
TCGACGGAAGCCTCGCTCACAGCAAGATCAGCACTGCCAGCACCTCCAAG
CAATTCACTTTTGGCTCGCCCGAAGTGTCTTGTAAGCGACCAGGAACGCG
CACTGCCCTCTCATCATCTTTCCCTCCCTCTGCCCTAGGCCTGATGTCTG
ATGTGGATCTCCTCATCCTGGAGAAAAAGAGACTGCACGCTCACCTCCGG
AAGTTTGAGCGGGCCTTTCAGACGAAGCATGGCAGGCGCGTCCAAACGGC
GGGAGACATTCTGCCCGTTGATGAGGAGTACACACGCTACAAGCGGATCA
AAGCGCAGCTCGCGCAATTAGGGGTGGTGGGGAGGAGAGAAAAGGGGCAA
GAGAGGGCGTCAAAAGGGAAAAAAGACAGAAAGGCTTACTGCCGATAGAG
CTTCAAATTTATATTTACCAGCTTGACAAGAGCGAGACCGATTGATCGAT
CTACTTTTATAGATAAACTCAATACAAAGAACAAGTAACACTCCTAGGCC
TAGGCTTTCTGGTGCATGGCTGTACACGTTTCGATACTTTGTGTACTTGT
CTTCTACTTTCCCATTACTTCACCTGCGTCATGCCTCCTTGGCCATCTCC
TCCCTTACCTCGGCCTCCTCTTCCTCCTTCTCTTTGTCCTCATGCTTCTC
TCCCTTCTTCCTTTTCCCGTCTTCATCAGAGCCCCCCCCCCCACTCACCT
CCCGTTCTACTACCCCCTCCTCTCCATCCTCATCTTCCCCCTCCTCCCCC

protein sequence of jgi.p|Nanoce1779_2|612372

>mRNA_10435-protein ID=mRNA_10435-protein|Name=jgi.p|Nanoce1779_2|612372|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp
MVRRWLARGRRKLARVKGGATAGPASVAADSLLASTPPVSEVGIVSKSRH
SIFAGKVNTTFSSSPAAKQNPSDSLSSSSSLADSFRPSSELQALLEEKKK
IKRRLKNFDASFQAKHGRTPSKKEKEPVRSIYEKYNCLKGRIAAFEQKDE
KKKALLLPRERERESSSSSSSRISSLTRPTLASASRTRMTAARRGIEKEE
GGVGLPPQSPRRSGSPTSSFALFSMRDQSKSLSRTSTMRISGSNKSCTDE
MGSASPSSPIAVASSAAWAFPSHVLSTPPPLPPSSSSRSINRTAPHLLFA
QIPNIDGSLAHSKISTASTSKQFTFGSPEVSCKRPGTRTALSSSFPPSAL
GLMSDVDLLILEKKRLHAHLRKFERAFQTKHGRRVQTAGDILPVDEEYTR
YKRIKAQLAQLGVVGRREKGQERASKGKK

mRNA from alignment at scaffold_63:80675..82724-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10435 ID=mRNA_10435|Name=jgi.p|Nanoce1779_2|612372|organism=Nannochloropsis oceanica|type=mRNA|length=2050bp|location=Sequence derived from alignment at scaffold_63:80675..82724- (Nannochloropsis oceanica)
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTC
CTCCTCCTCCACCGCCTGCGGACCTGCCGCCTACACCGTCTCCCCGCACA
GCCCTGAATTCGTCCCCGCGCTCTTCAGTCACCCCCTCCAAGATCCTACC
CCTCCCTCCTCCCTCCTCCCTCTCTCCCTTCCATCTCCCTTCCTCTCTCG
CGCAGACCTCCTTCAGGGTTGCCAGGCGCTGCGGGACAAGATTGCGACCT
TCGAGGTGCGCTTCAAGCGAGGGCATGGGGGAAGGTCGCCGAAGGGGGAG
GAGCGCCTGCCTCTGGCCTCCACGTATCATTTGTATCGGCAGTGGAAGCA
GGTGATCAGGGACAGGGCGGTCCAAGTCTTGCAGCGGATGGTAAGGCGGT
GGCTGGCAAGGGGCAGGAGGAAACTGGCACGAGTGAAGGGAGGGGCGACG
GCAGGACCAGCAAGTGTAGCTGCAGACTCTCTGCTTGCCTCTACCCCTCC
CGTGTCGGAGGTCGGCATCGTCAGCAAGAGCAGGCACAGCATCTTCGCCG
GCAAGGTCAACACTACATTTTCATCATCACCTGCAGCAAAGCAGAACCCC
TCGGATTCCTTGTCCTCATCATCCTCCCTCGCTGACTCTTTCCGGCCTTC
GTCCGAGCTTCAGGCACTGTTGGAGGAGAAGAAGAAGATCAAGAGGCGGC
TGAAGAACTTCGACGCCTCATTTCAAGCCAAGCACGGCCGGACCCCGAGC
AAGAAGGAGAAAGAGCCCGTGCGGAGCATCTACGAGAAGTACAACTGCCT
CAAAGGTCGGATCGCAGCCTTCGAGCAGAAGGACGAGAAGAAGAAGGCGC
TACTACTGCCGCGGGAGCGGGAGCGAGAGAGTAGCAGCAGCAGCAGCAGT
AGGATCAGCAGTCTTACCCGTCCCACGCTCGCCTCCGCCTCACGGACGCG
GATGACGGCAGCAAGGAGGGGGATAGAAAAGGAGGAGGGAGGTGTCGGAT
TGCCTCCGCAAAGTCCTCGGAGGAGCGGCAGCCCGACCAGCAGCTTTGCC
CTCTTCAGCATGCGCGACCAATCCAAGTCATTGTCGCGGACGTCGACGAT
GAGGATTAGCGGCAGCAACAAGAGCTGCACCGACGAAATGGGTTCAGCTT
CCCCTTCAAGCCCCATTGCTGTCGCGTCGTCAGCTGCCTGGGCTTTCCCT
TCACATGTGTTGTCGACTCCTCCTCCTCTTCCCCCCTCGTCCTCCTCCCG
CTCCATAAATCGCACTGCCCCCCATCTGCTCTTTGCGCAAATCCCAAACA
TCGACGGAAGCCTCGCTCACAGCAAGATCAGCACTGCCAGCACCTCCAAG
CAATTCACTTTTGGCTCGCCCGAAGTGTCTTGTAAGCGACCAGGAACGCG
CACTGCCCTCTCATCATCTTTCCCTCCCTCTGCCCTAGGCCTGATGTCTG
ATGTGGATCTCCTCATCCTGGAGAAAAAGAGACTGCACGCTCACCTCCGG
AAGTTTGAGCGGGCCTTTCAGACGAAGCATGGCAGGCGCGTCCAAACGGC
GGGAGACATTCTGCCCGTTGATGAGGAGTACACACGCTACAAGCGGATCA
AAGCGCAGCTCGCGCAATTAGGGGTGGTGGGGAGGAGAGAAAAGGGGCAA
GAGAGGGCGTCAAAAGGGAAAAAAGACAGAAAGGCTTACTGCCGATAGAG
CTTCAAATTTATATTTACCAGCTTGACAAGAGCGAGACCGATTGATCGAT
CTACTTTTATAGATAAACTCAATACAAAGAACAAGTAACACTCCTAGGCC
TAGGCTTTCTGGTGCATGGCTGTACACGTTTCGATACTTTGTGTACTTGT
CTTCTACTTTCCCATTACTTCACCTGCGTCATGCCTCCTTGGCCATCTCC
TCCCTTACCTCGGCCTCCTCTTCCTCCTTCTCTTTGTCCTCATGCTTCTC
TCCCTTCTTCCTTTTCCCGTCTTCATCAGAGCCCCCCCCCCCACTCACCT
CCCGTTCTACTACCCCCTCCTCTCCATCCTCATCTTCCCCCTCCTCCCCC

Coding sequence (CDS) from alignment at scaffold_63:80675..82724-

>mRNA_10435 ID=mRNA_10435|Name=jgi.p|Nanoce1779_2|612372|organism=Nannochloropsis oceanica|type=CDS|length=1288bp|location=Sequence derived from alignment at scaffold_63:80675..82724- (Nannochloropsis oceanica)
ATGGTAAGGCGGTGGCTGGCAAGGGGCAGGAGGAAACTGGCACGAGTGAA
GGGAGGGGCGACGGCAGGACCAGCAAGTGTAGCTGCAGACTCTCTGCTTG
CCTCTACCCCTCCCGTGTCGGAGGTCGGCATCGTCAGCAAGAGCAGGCAC
AGCATCTTCGCCGGCAAGGTCAACACTACATTTTCATCATCACCTGCAGC
AAAGCAGAACCCCTCGGATTCCTTGTCCTCATCATCCTCCCTCGCTGACT
CTTTCCGGCCTTCGTCCGAGCTTCAGGCACTGTTGGAGGAGAAGAAGAAG
ATCAAGAGGCGGCTGAAGAACTTCGACGCCTCATTTCAAGCCAAGCACGG
CCGGACCCCGAGCAAGAAGGAGAAAGAGCCCGTGCGGAGCATCTACGAGA
AGTACAACTGCCTCAAAGGTCGGATCGCAGCCTTCGAGCAGAAGGACGAG
AAGAAGAAGGCGCTACTACTGCCGCGGGAGCGGGAGCGAGAGAGTAGCAG
CAGCAGCAGCAGTAGGATCAGCAGTCTTACCCGTCCCACGCTCGCCTCCG
CCTCACGGACGCGGATGACGGCAGCAAGGAGGGGGATAGAAAAGGAGGAG
GGAGGTGTCGGATTGCCTCCGCAAAGTCCTCGGAGGAGCGGCAGCCCGAC
CAGCAGCTTTGCCCTCTTCAGCATGCGCGACCAATCCAAGTCATTGTCGC
GGACGTCGACGATGAGGATTAGCGGCAGCAACAAGAGCTGCACCGACGAA
ATGGGTTCAGCTTCCCCTTCAAGCCCCATTGCTGTCGCGTCGTCAGCTGC
CTGGGCTTTCCCTTCACATGTGTTGTCGACTCCTCCTCCTCTTCCCCCCT
CGTCCTCCTCCCGCTCCATAAATCGCACTGCCCCCCATCTGCTCTTTGCG
CAAATCCCAAACATCGACGGAAGCCTCGCTCACAGCAAGATCAGCACTGC
CAGCACCTCCAAGCAATTCACTTTTGGCTCGCCCGAAGTGTCTTGTAAGC
GACCAGGAACGCGCACTGCCCTCTCATCATCTTTCCCTCCCTCTGCCCTA
GGCCTGATGTCTGATGTGGATCTCCTCATCCTGGAGAAAAAGAGACTGCA
CGCTCACCTCCGGAAGTTTGAGCGGGCCTTTCAGACGAAGCATGGCAGGC
GCGTCCAAACGGCGGGAGACATTCTGCCCGTTGATGAGGAGTACACACGC
TACAAGCGGATCAAAGCGCAGCTCGCGCAATTAGGGGTGGTGGGGAGGAG
AGAAAAGGGGCAAGAGAGGGCGTCAAAAGGGAAAAAAG

Synonyms

Publications