jgi.p|Nanoce1779_2|634247, mRNA_10431 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|634247
Unique Name	mRNA_10431
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1517
Alignment location	scaffold_63:67401..69589 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	634333
Track	FilteredModels2
ProteinId	634247

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_63	supercontig	scaffold_63:67401..69589 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|634247	gene_10431	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|634247	mRNA_10431-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10431	CDS_10431	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_63:67401..69589+
coding sequence from alignment at scaffold_63:67401..69589+

mRNA sequence

>mRNA_10431 ID=mRNA_10431|Name=jgi.p|Nanoce1779_2|634247|organism=Nannochloropsis oceanica|type=mRNA|length=1517bp
CCGCGCCGTCTGGCTGGGACGGGACACGTCTTCCTCTACTTCTTTCTTGT
CTATAAAGCATCATCCAGCGCCAAGCCAGCCACACTCCGCAGCAACACAG
AATATGGAGCCCGCCTTCTTGCGCGTCCGGGTGCGCCCGCTGGCTCGTTC
ATGTCAGCCTTTGACCTTAGCTTGATTGAGCTAGCCACAAGGGGGAAAGG
AGGAGCTTGGCCCCCTCCCTGGTCACTGCCGTTCAGGGCACCCTGGGGGA
GCACACAGCCTGCGATAGATTTCGCTGGGATCATGTGGGGGTGCTGGCGG
AGTCCCACAGCCGGAAATTTCCAACCTTTATTTTCTTCTCTGCTTTTTTC
TTCATCCCCCACCCGCCGCCGAGGCTCCGTCAGAGCGCCACATCGTCAAC
CTGCAACCTGCAAAACCTGTCTCACTCTCTCTTCCCTCTCTCCTCAAAAT
ACGCAGATTAGGCGCACGCCGCGTAACTACTTCGACCCTCAACCCCCTTT
CTCCTCGGTTGCATTAAGCCATGTCCACCGCTGCCCGCCGCCGTCTGATG
CGCGACTTGAAGCGGCTACAGAGCGACCCTCCACAAGGCGTTCAGGGCGC
ACCCCTCGACAACAATATCATGACCTGGCAGGCGGTCATCTTCGGACCTG
ACGACACGCCCTGGGAAGGCGGCACTTTTAAGCTGCTCCTTGAGTTCACA
GAGGACTACCCCAACAAGGCTCCGGCGGTGCGATTTGTGACGAAGATGTT
CCACCCCAACATTTACAACGACGGCCAGATCTGTCTCGACATCCTGCAAA
ACCAGTGGAGCCCCATCTATGACGTCTCGGCCATCCTCACCTCCATCCAG
TCCTTGCTGTGCGACCCCAACCCTGCGTCGCCCGCCAACAGTGAGGCCTC
GCGTCTGTACCAGGACAATCGGCGAGAGTACAATCGCCGCGTGAAGGAGA
TTGTCGAACAAAGCTGGATCGCGGATGGCGACGACGACGAGGATGAGGAG
GAAGAGGAGGAGGAAGAGGAGGAGGAGGTAGAGGGCGAGGAAGGGGGTAA
GGGAGAGTCGGCGGCGGAAGGTGAGCATGCATGAGGTGGAAGAAGGTCGG
AAAAGAGGGACGCGGACGAGGGAGATGGCGCGGCCGTTTGCGGCAACACC
ATGGGCCTGTCTGTGACCCCGTATTTTTAATCCCCTACTGTTAAATCCCT
CGGGCTCGGACGCTCGCATTTGTGCATGCTTATCGAGGTCGATTGGAGTC
TGGTATTTGCCCGGCACAGCCAGCAGGCGAGGGGAGGAGAGGTATCGAGA
CCGAGAGCTATAGGTAGAGTCAGAGGAGAGATGTACATACAAACATTAAG
GACGCAACTCACATAGAGGAAAGGGGCAAGTGATGAGGGAAAGTGAAGTA
AAATGTGCCACGGACCCCGCAAGCGTGAAAGCCGAGACGAAGGCGGCAAG
TGGGTGGTGGAGACTCTCCCCGTTCATGATTACTTTGTAGGAGAAATAAT
ACATCTCCTCGACAGGC

protein sequence of jgi.p|Nanoce1779_2|634247

>mRNA_10431-protein ID=mRNA_10431-protein|Name=jgi.p|Nanoce1779_2|634247|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MSTAARRRLMRDLKRLQSDPPQGVQGAPLDNNIMTWQAVIFGPDDTPWEG
GTFKLLLEFTEDYPNKAPAVRFVTKMFHPNIYNDGQICLDILQNQWSPIY
DVSAILTSIQSLLCDPNPASPANSEASRLYQDNRREYNRRVKEIVEQSWI
ADGDDDEDEEEEEEEEEEEVEGEEGGKGESAAEGEHA*

mRNA from alignment at scaffold_63:67401..69589+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10431 ID=mRNA_10431|Name=jgi.p|Nanoce1779_2|634247|organism=Nannochloropsis oceanica|type=mRNA|length=2189bp|location=Sequence derived from alignment at scaffold_63:67401..69589+ (Nannochloropsis oceanica)
CCGCGCCGTCTGGCTGGGACGGGACACGTCTTCCTCTACTTCTTTCTTGT
CTATAAAGCATCATCCAGCGCCAAGCCAGCCACACTCCGCAGCAACACAG
AATATGGAGCCCGCCTTCTTGCGCGTCCGGGTGCGCCCGCTGGCTCGTTC
ATGTCAGCCTTTGACCTTAGCTTGATTGAGCTAGCCACAAGGGGGAAAGG
AGGAGCTTGGCCCCCTCCCTGGTCACTGCCGTTCAGGGCACCCTGGGGGA
GCACACAGCCTGCGATAGATTTCGCTGGGATCATGTGGGGGTGCTGGCGG
AGTCCCACAGCCGGAAATTTCCAACCTTTATTTTCTTCTCTGCTTTTTTC
TTCATCCCCCACCCGCCGCCGAGGCTCCGTCAGAGCGCCACATCGTCAAC
CTGCAACCTGCAAAACCTGTCTCACTCTCTCTTCCCTCTCTCCTCAAAAT
ACGCAGATTAGGCGCACGCCGCGTAACTACTTCGACCCTCAACCCCCTTT
CTCCTCGGTTGCATTAAGCCATGTCCACCGCTGCCCGCCGCCGTCTGATG
CGCGACTTGAAGCGGCTACAGAGCGACCCTCCACAAGGCGTTCAGGGCGC
ACCCCTCGACAACAATGTACGTTCGATCGACGCGATGGAATATAAGAAAT
AGCTGTTGCTGCGCTGTCCACCCGAGACAGTCCCCTAAAGCCCTCCTTTT
ATTCCTTCCTGCTTCCCTCTCTCCCAGATCATGACCTGGCAGGCGGTCAT
CTTCGGACCTGACGACACGCCCTGGGAAGGCGGCACTTTTAAGCTGCTCC
TTGAGTTCACAGAGGACTACCCCAACAAGGTAGGCAGGGAGGGAGGGAGG
AGTTGGTATGCAGGCAGCGAGTAGCTCAAGCATTTTATCGGTGCATTGTG
ACAGGGTGCGATAAGAGCCAGACAGCCATCATTTCATACATCTGGCCCTG
TCATAATCCCCTTCCTCCCTTTCTCTCTTCTTTCTTTCTCCCGCCATAGG
CTCCGGCGGTGCGATTTGTGACGAAGATGTTCCACCCCAACATTTACAAC
GACGGCCAGATCTGTCTCGGTACGTTGGTAGGGAGAAGGAAAAAAAGGGA
AAGAAAAAGGGACACGAGGAAGTGAGGAGGAGAAGAGCGACAAATTGTGT
AAATGTAAGGGGTGTAGAAGCTGAGGTGCCACTTTATGCGCCCCTCCCTC
ATTGCCCTCCTCCTTGTCAACCCCCTCCTTTCCCTGACTAGACATCCTGC
AAAACCAGTGGAGCCCCATCTATGACGTCTCGGCCATCCTCACCTCCATC
CAGTCCTTGCTGTGCGACCCCAACCCTGCGTCGCCCGCCAACAGTGAGGC
CTCGCGTCTGTACCAGGCACGTGATAGCGTAGCCTCGCCCTCCTTCCTTC
CCTACTTCGCTCCCTCCCGTCTTATTTTTGCAGCTTTAGTTCGTTGGTTT
AGCGAAGCGAATATTTTTGGTTGCCGCAGAGAGGAGTGAGGAAAAGTCCT
TTTATTTCAAATTAATACCTGTACCATCAACCCTTCACTCGTCCTCCGTC
CCTCTCCCCCTCTCTCTATCCGTCCCCCCCCTTAGGACAATCGGCGAGAG
TACAATCGCCGCGTGAAGGAGATTGTCGAACAAAGCTGGATCGCGGATGG
CGACGACGACGAGGATGAGGAGGAAGAGGAGGAGGAAGAGGAGGAGGAGG
TAGAGGGCGAGGAAGGGGGTAAGGGAGAGTCGGCGGCGGAAGGTGAGCAT
GCATGAGGTGGAAGAAGGTCGGAAAAGAGGGACGCGGACGAGGGAGATGG
CGCGGCCGTTTGCGGCAACACCATGGGCCTGTCTGTGACCCCGTATTTTT
AATCCCCTACTGTTAAATCCCTCGGGCTCGGACGCTCGCATTTGTGCATG
CTTATCGAGGTCGATTGGAGTCTGGTATTTGCCCGGCACAGCCAGCAGGC
GAGGGGAGGAGAGGTATCGAGACCGAGAGCTATAGGTAGAGTCAGAGGAG
AGATGTACATACAAACATTAAGGACGCAACTCACATAGAGGAAAGGGGCA
AGTGATGAGGGAAAGTGAAGTAAAATGTGCCACGGACCCCGCAAGCGTGA
AAGCCGAGACGAAGGCGGCAAGTGGGTGGTGGAGACTCTCCCCGTTCATG
ATTACTTTGTAGGAGAAATAATACATCTCCTCGACAGGC

Coding sequence (CDS) from alignment at scaffold_63:67401..69589+

>mRNA_10431 ID=mRNA_10431|Name=jgi.p|Nanoce1779_2|634247|organism=Nannochloropsis oceanica|type=CDS|length=2820bp|location=Sequence derived from alignment at scaffold_63:67401..69589+ (Nannochloropsis oceanica)
ATGTCCACCGCTGCCCGCCGCCGTCTGATGCGCGACTTGAAGCGGCTACA
GAGCGACCCTCCACAAGGCGTTCAGGGCGCACCCCTCGACAACAATATCA
TGACCTGGCAGGCGGTCATCTTCGGACCTGACGACACGCCCTGGGAAGGC
GGCACTTTTAAGCTGCTCCTTGAGTTCACAGAGGACTACCCCAACAAGGC
TCCGGCGGTGCGATTTGTGACGAAGATGTTCCACCCCAACATTTACAACG
ACGGCCAGATCTGTCTCGACATCCTGCAAAACCAGTGGAGCCCCATCTAT
GACGTCTCGGCCATCCTCACCTCCATCCAGTCCTTGCTGTGCGACCCCAA
CCCTGCGTCGCCCGCCAACAGTGAGGCCTCGCGTCTGTACCAGGACAATC
GGCGAGAGTACAATCGCCGCGTGAAGGAGATTGTCGAACAAAGCTGGATC
GCGGATGGCGACGACGACGAGGATGAGGAGGAAGAGGAGGAGGAAGAGGA
GGAGGAGGTAGAGGGCGAGGAAGGGGGTAAGGGAGAGTCGGCGGCGGAAG
GTGAGCATGCATGAATGTCCACCGCTGCCCGCCGCCGTCTGATGCGCGAC
TTGAAGCGGCTACAGAGCGACCCTCCACAAGGCGTTCAGGGCGCACCCCT
CGACAACAATATCATGACCTGGCAGGCGGTCATCTTCGGACCTGACGACA
CGCCCTGGGAAGGCGGCACTTTTAAGCTGCTCCTTGAGTTCACAGAGGAC
TACCCCAACAAGGCTCCGGCGGTGCGATTTGTGACGAAGATGTTCCACCC
CAACATTTACAACGACGGCCAGATCTGTCTCGACATCCTGCAAAACCAGT
GGAGCCCCATCTATGACGTCTCGGCCATCCTCACCTCCATCCAGTCCTTG
CTGTGCGACCCCAACCCTGCGTCGCCCGCCAACAGTGAGGCCTCGCGTCT
GTACCAGGACAATCGGCGAGAGTACAATCGCCGCGTGAAGGAGATTGTCG
AACAAAGCTGGATCGCGGATGGCGACGACGACGAGGATGAGGAGGAAGAG
GAGGAGGAAGAGGAGGAGGAGGTAGAGGGCGAGGAAGGGGGTAAGGGAGA
GTCGGCGGCGGAAGGTGAGCATGCATGAATGTCCACCGCTGCCCGCCGCC
GTCTGATGCGCGACTTGAAGCGGCTACAGAGCGACCCTCCACAAGGCGTT
CAGGGCGCACCCCTCGACAACAATATCATGACCTGGCAGGCGGTCATCTT
CGGACCTGACGACACGCCCTGGGAAGGCGGCACTTTTAAGCTGCTCCTTG
AGTTCACAGAGGACTACCCCAACAAGGCTCCGGCGGTGCGATTTGTGACG
AAGATGTTCCACCCCAACATTTACAACGACGGCCAGATCTGTCTCGACAT
CCTGCAAAACCAGTGGAGCCCCATCTATGACGTCTCGGCCATCCTCACCT
CCATCCAGTCCTTGCTGTGCGACCCCAACCCTGCGTCGCCCGCCAACAGT
GAGGCCTCGCGTCTGTACCAGGACAATCGGCGAGAGTACAATCGCCGCGT
GAAGGAGATTGTCGAACAAAGCTGGATCGCGGATGGCGACGACGACGAGG
ATGAGGAGGAAGAGGAGGAGGAAGAGGAGGAGGAGGTAGAGGGCGAGGAA
GGGGGTAAGGGAGAGTCGGCGGCGGAAGGTGAGCATGCATGAATGTCCAC
CGCTGCCCGCCGCCGTCTGATGCGCGACTTGAAGCGGCTACAGAGCGACC
CTCCACAAGGCGTTCAGGGCGCACCCCTCGACAACAATATCATGACCTGG
CAGGCGGTCATCTTCGGACCTGACGACACGCCCTGGGAAGGCGGCACTTT
TAAGCTGCTCCTTGAGTTCACAGAGGACTACCCCAACAAGGCTCCGGCGG
TGCGATTTGTGACGAAGATGTTCCACCCCAACATTTACAACGACGGCCAG
ATCTGTCTCGACATCCTGCAAAACCAGTGGAGCCCCATCTATGACGTCTC
GGCCATCCTCACCTCCATCCAGTCCTTGCTGTGCGACCCCAACCCTGCGT
CGCCCGCCAACAGTGAGGCCTCGCGTCTGTACCAGGACAATCGGCGAGAG
TACAATCGCCGCGTGAAGGAGATTGTCGAACAAAGCTGGATCGCGGATGG
CGACGACGACGAGGATGAGGAGGAAGAGGAGGAGGAAGAGGAGGAGGAGG
TAGAGGGCGAGGAAGGGGGTAAGGGAGAGTCGGCGGCGGAAGGTGAGCAT
GCATGAATGTCCACCGCTGCCCGCCGCCGTCTGATGCGCGACTTGAAGCG
GCTACAGAGCGACCCTCCACAAGGCGTTCAGGGCGCACCCCTCGACAACA
ATATCATGACCTGGCAGGCGGTCATCTTCGGACCTGACGACACGCCCTGG
GAAGGCGGCACTTTTAAGCTGCTCCTTGAGTTCACAGAGGACTACCCCAA
CAAGGCTCCGGCGGTGCGATTTGTGACGAAGATGTTCCACCCCAACATTT
ACAACGACGGCCAGATCTGTCTCGACATCCTGCAAAACCAGTGGAGCCCC
ATCTATGACGTCTCGGCCATCCTCACCTCCATCCAGTCCTTGCTGTGCGA
CCCCAACCCTGCGTCGCCCGCCAACAGTGAGGCCTCGCGTCTGTACCAGG
ACAATCGGCGAGAGTACAATCGCCGCGTGAAGGAGATTGTCGAACAAAGC
TGGATCGCGGATGGCGACGACGACGAGGATGAGGAGGAAGAGGAGGAGGA
AGAGGAGGAGGAGGTAGAGGGCGAGGAAGGGGGTAAGGGAGAGTCGGCGG
CGGAAGGTGAGCATGCATGA

Synonyms

Publications