scaffold_113, scaffold_113 (supercontig) Nannochloropsis oceanica

Overview
Namescaffold_113
Unique Namescaffold_113
Typesupercontig
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length39689
Alignment locationjgi.p|Nanoce1779_2|43711:10437..11331 +
Alignment locationjgi.p|Nanoce1779_2|43711:10437..11331 +
Alignment locationCDS_12097:10498..11178 +
Alignment locationjgi.p|Nanoce1779_2|44173:27560..29797 -
Alignment locationjgi.p|Nanoce1779_2|44173:27560..29797 -
Alignment locationCDS_12101:29550..29635 -
Alignment locationCDS_12101:29324..29390 -
Alignment locationCDS_12101:28987..29186 -
Alignment locationCDS_12101:28705..28803 -
Alignment locationCDS_12101:28538..28590 -
Alignment locationCDS_12101:28379..28449 -
Alignment locationCDS_12101:28129..28230 -
Alignment locationCDS_12101:27875..27985 -
Alignment locationjgi.p|Nanoce1779_2|616129:4550..7853 -
Alignment locationjgi.p|Nanoce1779_2|616129:4550..7853 -
Alignment locationCDS_12096:7641..7784 -
Alignment locationCDS_12096:7351..7431 -
Alignment locationCDS_12096:7161..7220 -
Alignment locationCDS_12096:6901..7036 -
Alignment locationCDS_12096:6560..6702 -
Alignment locationCDS_12096:6317..6427 -
Alignment locationCDS_12096:5956..6114 -
Alignment locationCDS_12096:5743..5812 -
Alignment locationCDS_12096:5416..5543 -
Alignment locationCDS_12096:5205..5252 -
Alignment locationjgi.p|Nanoce1779_2|616138:11470..15179 +
Alignment locationjgi.p|Nanoce1779_2|616138:11470..15179 +
Alignment locationCDS_12098:11878..12151 +
Alignment locationCDS_12098:12308..12423 +
Alignment locationCDS_12098:12531..12629 +
Alignment locationCDS_12098:12811..12904 +
Alignment locationCDS_12098:13052..13095 +
Alignment locationCDS_12098:13226..13330 +
Alignment locationCDS_12098:13466..13522 +
Alignment locationCDS_12098:13680..13752 +
Alignment locationCDS_12098:13919..14008 +
Alignment locationCDS_12098:14165..14279 +
Alignment locationCDS_12098:14503..14545 +
Alignment locationCDS_12098:14829..14972 +
Alignment locationjgi.p|Nanoce1779_2|616145:15361..18021 -
Alignment locationjgi.p|Nanoce1779_2|616145:15361..18021 -
Alignment locationCDS_12099:15372..17999 -
Alignment locationjgi.p|Nanoce1779_2|616171:31901..33302 +
Alignment locationjgi.p|Nanoce1779_2|616171:31901..33302 +
Alignment locationCDS_12102:32009..32145 +
Alignment locationCDS_12102:32256..32475 +
Alignment locationCDS_12102:32574..32612 +
Alignment locationjgi.p|Nanoce1779_2|616174:33800..35479 -
Alignment locationjgi.p|Nanoce1779_2|616174:33800..35479 -
Alignment locationCDS_12103:34786..34818 -
Alignment locationCDS_12103:34579..34647 -
Alignment locationCDS_12103:34198..34356 -
Alignment locationCDS_12103:33951..34067 -
Alignment locationjgi.p|Nanoce1779_2|634711:608..4070 -
Alignment locationjgi.p|Nanoce1779_2|634711:608..4070 -
Alignment locationCDS_12095:2482..2494 -
Alignment locationCDS_12095:2149..2250 -
Alignment locationCDS_12095:1582..1702 -
Alignment locationCDS_12095:1300..1354 -
Alignment locationCDS_12095:1034..1143 -
Alignment locationCDS_12095:608..746 -
Alignment locationjgi.p|Nanoce1779_2|644083:18624..27174 -
Alignment locationjgi.p|Nanoce1779_2|644083:18624..27174 -
Alignment locationCDS_12100:27131..27174 -
Alignment locationCDS_12100:26928..26979 -
Alignment locationCDS_12100:26604..26724 -
Alignment locationCDS_12100:25999..26155 -
Alignment locationCDS_12100:25824..25914 -
Alignment locationCDS_12100:25524..25655 -
Alignment locationCDS_12100:25157..25378 -
Alignment locationCDS_12100:24900..24988 -
Alignment locationCDS_12100:24587..24648 -
Alignment locationCDS_12100:24343..24394 -
Alignment locationCDS_12100:23320..23391 -
Alignment locationCDS_12100:23087..23162 -
Alignment locationCDS_12100:22476..22634 -
Alignment locationCDS_12100:22103..22255 -
Alignment locationCDS_12100:21793..21868 -
Alignment locationCDS_12100:21228..21610 -
Alignment locationCDS_12100:20194..20269 -
Alignment locationCDS_12100:19973..20100 -
Alignment locationCDS_12100:19693..19758 -
Alignment locationCDS_12100:19420..19546 -
Alignment locationCDS_12100:19172..19241 -
Alignment locationCDS_12100:18624..18978 -
Alignment locationjgi.p|Nanoce1779_2|43711:10498..11178 +
Alignment locationjgi.p|Nanoce1779_2|44173:27875..29635 -
Alignment locationjgi.p|Nanoce1779_2|616129:5205..7784 -
Alignment locationjgi.p|Nanoce1779_2|616138:11878..14972 +
Alignment locationjgi.p|Nanoce1779_2|616145:15372..17999 -
Alignment locationjgi.p|Nanoce1779_2|616171:32009..32612 +
Alignment locationjgi.p|Nanoce1779_2|616174:33951..34818 -
Alignment locationjgi.p|Nanoce1779_2|634711:608..2494 -
Alignment locationjgi.p|Nanoce1779_2|644083:18624..27174 -
Alignment locationncniL002:609..35479 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
jgi.p|Nanoce1779_2|43711genejgi.p|Nanoce1779_2|43711:10437..11331 +
jgi.p|Nanoce1779_2|43711mRNAjgi.p|Nanoce1779_2|43711:10437..11331 +
CDS_12097CDSCDS_12097:10498..11178 +
jgi.p|Nanoce1779_2|44173genejgi.p|Nanoce1779_2|44173:27560..29797 -
jgi.p|Nanoce1779_2|44173mRNAjgi.p|Nanoce1779_2|44173:27560..29797 -
CDS_12101CDSCDS_12101:29550..29635 -
CDS_12101CDSCDS_12101:29324..29390 -
CDS_12101CDSCDS_12101:28987..29186 -
CDS_12101CDSCDS_12101:28705..28803 -
CDS_12101CDSCDS_12101:28538..28590 -
CDS_12101CDSCDS_12101:28379..28449 -
CDS_12101CDSCDS_12101:28129..28230 -
CDS_12101CDSCDS_12101:27875..27985 -
jgi.p|Nanoce1779_2|616129genejgi.p|Nanoce1779_2|616129:4550..7853 -
jgi.p|Nanoce1779_2|616129mRNAjgi.p|Nanoce1779_2|616129:4550..7853 -
CDS_12096CDSCDS_12096:7641..7784 -
CDS_12096CDSCDS_12096:7351..7431 -
CDS_12096CDSCDS_12096:7161..7220 -
CDS_12096CDSCDS_12096:6901..7036 -
CDS_12096CDSCDS_12096:6560..6702 -
CDS_12096CDSCDS_12096:6317..6427 -
CDS_12096CDSCDS_12096:5956..6114 -
CDS_12096CDSCDS_12096:5743..5812 -
CDS_12096CDSCDS_12096:5416..5543 -
CDS_12096CDSCDS_12096:5205..5252 -
jgi.p|Nanoce1779_2|616138genejgi.p|Nanoce1779_2|616138:11470..15179 +
jgi.p|Nanoce1779_2|616138mRNAjgi.p|Nanoce1779_2|616138:11470..15179 +
CDS_12098CDSCDS_12098:11878..12151 +
CDS_12098CDSCDS_12098:12308..12423 +
CDS_12098CDSCDS_12098:12531..12629 +
CDS_12098CDSCDS_12098:12811..12904 +
CDS_12098CDSCDS_12098:13052..13095 +
CDS_12098CDSCDS_12098:13226..13330 +
CDS_12098CDSCDS_12098:13466..13522 +
CDS_12098CDSCDS_12098:13680..13752 +
CDS_12098CDSCDS_12098:13919..14008 +
CDS_12098CDSCDS_12098:14165..14279 +
CDS_12098CDSCDS_12098:14503..14545 +
CDS_12098CDSCDS_12098:14829..14972 +
jgi.p|Nanoce1779_2|616145genejgi.p|Nanoce1779_2|616145:15361..18021 -
jgi.p|Nanoce1779_2|616145mRNAjgi.p|Nanoce1779_2|616145:15361..18021 -
CDS_12099CDSCDS_12099:15372..17999 -
jgi.p|Nanoce1779_2|616171genejgi.p|Nanoce1779_2|616171:31901..33302 +
jgi.p|Nanoce1779_2|616171mRNAjgi.p|Nanoce1779_2|616171:31901..33302 +
CDS_12102CDSCDS_12102:32009..32145 +
CDS_12102CDSCDS_12102:32256..32475 +
CDS_12102CDSCDS_12102:32574..32612 +
jgi.p|Nanoce1779_2|616174genejgi.p|Nanoce1779_2|616174:33800..35479 -
jgi.p|Nanoce1779_2|616174mRNAjgi.p|Nanoce1779_2|616174:33800..35479 -
CDS_12103CDSCDS_12103:34786..34818 -
CDS_12103CDSCDS_12103:34579..34647 -
CDS_12103CDSCDS_12103:34198..34356 -
CDS_12103CDSCDS_12103:33951..34067 -
jgi.p|Nanoce1779_2|634711genejgi.p|Nanoce1779_2|634711:608..4070 -
jgi.p|Nanoce1779_2|634711mRNAjgi.p|Nanoce1779_2|634711:608..4070 -
CDS_12095CDSCDS_12095:2482..2494 -
CDS_12095CDSCDS_12095:2149..2250 -
CDS_12095CDSCDS_12095:1582..1702 -
CDS_12095CDSCDS_12095:1300..1354 -
CDS_12095CDSCDS_12095:1034..1143 -
CDS_12095CDSCDS_12095:608..746 -
jgi.p|Nanoce1779_2|644083genejgi.p|Nanoce1779_2|644083:18624..27174 -
jgi.p|Nanoce1779_2|644083mRNAjgi.p|Nanoce1779_2|644083:18624..27174 -
CDS_12100CDSCDS_12100:27131..27174 -
CDS_12100CDSCDS_12100:26928..26979 -
CDS_12100CDSCDS_12100:26604..26724 -
CDS_12100CDSCDS_12100:25999..26155 -
CDS_12100CDSCDS_12100:25824..25914 -
CDS_12100CDSCDS_12100:25524..25655 -
CDS_12100CDSCDS_12100:25157..25378 -
CDS_12100CDSCDS_12100:24900..24988 -
CDS_12100CDSCDS_12100:24587..24648 -
CDS_12100CDSCDS_12100:24343..24394 -
CDS_12100CDSCDS_12100:23320..23391 -
CDS_12100CDSCDS_12100:23087..23162 -
CDS_12100CDSCDS_12100:22476..22634 -
CDS_12100CDSCDS_12100:22103..22255 -
CDS_12100CDSCDS_12100:21793..21868 -
CDS_12100CDSCDS_12100:21228..21610 -
CDS_12100CDSCDS_12100:20194..20269 -
CDS_12100CDSCDS_12100:19973..20100 -
CDS_12100CDSCDS_12100:19693..19758 -
CDS_12100CDSCDS_12100:19420..19546 -
CDS_12100CDSCDS_12100:19172..19241 -
CDS_12100CDSCDS_12100:18624..18978 -
jgi.p|Nanoce1779_2|43711polypeptidejgi.p|Nanoce1779_2|43711:10498..11178 +
jgi.p|Nanoce1779_2|44173polypeptidejgi.p|Nanoce1779_2|44173:27875..29635 -
jgi.p|Nanoce1779_2|616129polypeptidejgi.p|Nanoce1779_2|616129:5205..7784 -
jgi.p|Nanoce1779_2|616138polypeptidejgi.p|Nanoce1779_2|616138:11878..14972 +
jgi.p|Nanoce1779_2|616145polypeptidejgi.p|Nanoce1779_2|616145:15372..17999 -
jgi.p|Nanoce1779_2|616171polypeptidejgi.p|Nanoce1779_2|616171:32009..32612 +
jgi.p|Nanoce1779_2|616174polypeptidejgi.p|Nanoce1779_2|616174:33951..34818 -
jgi.p|Nanoce1779_2|634711polypeptidejgi.p|Nanoce1779_2|634711:608..2494 -
jgi.p|Nanoce1779_2|644083polypeptidejgi.p|Nanoce1779_2|644083:18624..27174 -
ncniL002syntenic_regionncniL002:609..35479 +
Analyses
This supercontig is derived from or has results from the following analyses
Analysis NameDate Performed
Gennome assembly for N. oceanica CCMP17792018-02-01
Annotated Terms
Homology
Relationships
Sequences
Synonyms
Publications