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Properties
| Property Name | Value |
|---|
| TranscriptId | 44259 |
| Track | FilteredModels2 |
| ProteinId | 44173 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_113 | supercontig | scaffold_113:27560..29797 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_12101 ID=mRNA_12101|Name=jgi.p|Nanoce1779_2|44173|organism=Nannochloropsis oceanica|type=mRNA|length=1201bp
CCCTTCACTCACGAGCTCCTGGGCGATATTTTACGCGTCATCATCGCTGA
GGAGGGAGGGGGGAGTGGAGGGGCGGCGACGACGGAGAAGGAGGAGGATG
AAGACGAGGAGCTTTTCCATGATGAGAGGATTGTACCCCTCCACGAGCAT
TTCACGATACCCGGGAGAAGGGGAGGATGGAGGGAACTGCTGGAGCCAGC
CGGATGCGACAGAATTTATGGTTCGGGGCATTAACTACATGAGTGATAGG
GTCAAGGTCCCCTCCTCCCAAGCCGCCTATAATCTGCTAGGTGTCGACCT
CCTACTCTCGGAAGAGAAACACAACTGCGCCTCCTCCTCCCCCTCCTCCT
TTCTCTCCCGCTGTCGTCGCCTCCCGCGTCCCTCCTCCGAATGCTTCATC
ATTGTCATGCATTTCTCCCTGCCCTGGGGTTCCTTCCTCGCATATTTCTG
CCCTGCTCATGAAGGCTCTTCCCCTTACGTGGGAGACGGGAAGCTCGACG
CCCTCCTCAAGAACTTTCTAGAAGGTGATGATACCTTTCGGAATCAGAGA
TTGAAGGTCATTCCTCGCTGCGTCGAGGGCCCTTGGATGGTCAAAACAGC
CGTTGGCACCACGCCCGCCATCATGGGCACTAAGATCCTCCACACCTACC
ACCCACTCGCCAACGCCTTTGAGATCGAGGTGGACATCTCCTCCTCCGTC
CCTGCCCAATACATTCTGGGGATGGTCAAGTCGTTCACACAAATCGTCTC
GGTCGATCTGGCTTTCGTCCTCCAGGGGGAGAATGAGGAGGAGCTTCCCG
AGCGCGTCCTTTTTGCCGTCCGTTTCCATCACCTGAATGTGCCTAAAGCC
CCGAGCTATGACGCCTGGGAGAACAGGGAGGGCTGAGGGAGGGAGGGAGG
ACGACAAGAGGGAGGAGGATGGAATAGGAATATAGGAGCCTGTGGGGACA
GACGTAGAAGAGACAGTGGTGGTGTGTCGAGACGGAGTGAGGTAGGCGGG
AAGGAGCATGGGCGGGAAGGAGGGAGGGAATGGGAATAGACGGTCTTTTT
TAAGAGTACGGGGGTGCACAGGCAGATAGAGAATCCATATTTTAACGCAA
CATCAAAAATCAGTCTTCTCACATGGAGAAGAAGACAGAGAAATAAGAAT
GAGAGACGGTAGGAAGGGCGGGGATTAGAAAGAAGGAAAGAGCCGAACAG
G back to topprotein sequence of jgi.p|Nanoce1779_2|44173 >mRNA_12101-protein ID=mRNA_12101-protein|Name=jgi.p|Nanoce1779_2|44173|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MKTRSFSMMRGLYPSTSISRYPGEGEDGGNCWSQPDATEFMVRGINYMSD
RVKVPSSQAAYNLLGVDLLLSEEKHNCASSSPSSFLSRCRRLPRPSSECF
IIVMHFSLPWGSFLAYFCPAHEGSSPYVGDGKLDALLKNFLEGDDTFRNQ
RLKVIPRCVEGPWMVKTAVGTTPAIMGTKILHTYHPLANAFEIEVDISSS
VPAQYILGMVKSFTQIVSVDLAFVLQGENEEELPERVLFAVRFHHLNVPK
APSYDAWENREG* back to topmRNA from alignment at scaffold_113:27560..29797- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_12101 ID=mRNA_12101|Name=jgi.p|Nanoce1779_2|44173|organism=Nannochloropsis oceanica|type=mRNA|length=2238bp|location=Sequence derived from alignment at scaffold_113:27560..29797- (Nannochloropsis oceanica)
CCCTTCACTCACGAGCTCCTGGGCGATATTTTACGCGTCATCATCGCTGA
GGAGGGAGGGGGGAGTGGAGGGGCGGCGACGACGGAGAAGGAGGAGGCTT
CTCTTGTGGAAGGCGGGGAGGAGAAGGGAGGGGAGGGCCGGGGGGAGGAG
AGGTGGAGGAGGATGAAGACGAGGAGCTTTTCCATGATGAGAGGATTGTA
CCCCTCCACGAGCATTTCACGATACCCGGGAGAAGGGGAGGATGGAGGGT
AAGGGGGGCCGGAAAAGAGGGAGAGAGGGAGGGAGGGATTGTTTTTGTGC
GTTTACACCGAGGGGAGGGAGGGAGGGAGGGAGGGAGAGAACCCGACCAA
AGGAAGGAATGACATCTGAAACCCTCATCTCCTCCTCCCTCCCTCCCTCC
CTCGCAGGAACTGCTGGAGCCAGCCGGATGCGACAGAATTTATGGTTCGG
GGCATTAACTACATGAGTGATAGGGTAGGGAGGGAGGGAAGGCGGGAGGG
AGGGAGGGAGGGAGAGAGGCTGCCCATGTGCACCCCTCCCGCAACAAACC
TCGATTCTCACCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCTGCAGGTCAAGGTCCCCTCCTCCCAAGCCGCCTATAATCTGCTA
GGTGTCGACCTCCTACTCTCGGAAGAGAAACACAACTGCGCCTCCTCCTC
CCCCTCCTCCTTTCTCTCCCGCTGTCGTCGCCTCCCGCGTCCCTCCTCCG
AATGCTTCATCATTGTCATGCATTTCTCCCTGCCCTGGGGTTCCTTCCTC
GCATATTTCTGGTACGTTGTTCTTCCCTCCCCCCCTCCCTCCCTCCCTCC
TCATCACTGCTTCCGCCACTCAACAAGGGAGGAGGGAAGGAAGGAGGGAG
GGTAGGAGGAATCATCATTTATAAAACTCCAACCACAAAAGAAAGAGGTT
ATACCCAAGATTTCCTCCCTCCCTCCCTCCCTCCCTCCTTCCAGCCCTGC
TCATGAAGGCTCTTCCCCTTACGTGGGAGACGGGAAGCTCGACGCCCTCC
TCAAGAACTTTCTAGAAGGTGATGATACCTTTCGGAATCAGAGGTACGTA
CCTCCCTCGCGCCTTCCCTCTTTCCTACGTCCATAAGTTGCTCACTCATA
TCCTTCCTCCCCCCCTCCCTCCCTCCCTCCGCCTCTCCTTCGTCTTCAAA
CACACAGATTGAAGGTCATTCCTCGCTGCGTCGAGGGCCCTTGGATGGTC
AAAACAGCCGGTACGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTC
CTTCCTACTTTCCACAGCCGACCCCTCCCTCCCTCCCTCCCTCCTCAGTT
GGCACCACGCCCGCCATCATGGGCACTAAGATCCTCCACACCTACCACCC
ACTCGCCAACGCCTTTGAGGTACGTCCTCCCTCCCTCCCTCCCTCCCTCC
CTCTCTCCCTCCTTCCCTCCCCATCACGCCCGCCTTTGTCGAGGCCGTCC
AAATAACACCCCTCCCTCCTTTCCTCCTTTCCTCCCTCCCCCCCTCCCTC
TAATGCCCCCTCCTTAGATCGAGGTGGACATCTCCTCCTCCGTCCCTGCC
CAATACATTCTGGGGATGGTCAAGTCGTTCACACAAATCGTCTCGGTCGA
TCTGGCTTTCGTCCTCCAGGTATCTTCCCCCCCCCCCTCCCTCTCTCCCG
TCCTCCCCCTCCTCCTCCCTCCCTCCTGCGCTCTTCCTCCCGACACTCTC
ACACACCTTCTCCCTCCCTCCCCCCCTCCGTCCCTCCCATTTTCCCTCCC
CTTTTCCACCAGGGGGAGAATGAGGAGGAGCTTCCCGAGCGCGTCCTTTT
TGCCGTCCGTTTCCATCACCTGAATGTGCCTAAAGCCCCGAGCTATGACG
CCTGGGAGAACAGGGAGGGCTGAGGGAGGGAGGGAGGACGACAAGAGGGA
GGAGGATGGAATAGGAATATAGGAGCCTGTGGGGACAGACGTAGAAGAGA
CAGTGGTGGTGTGTCGAGACGGAGTGAGGTAGGCGGGAAGGAGCATGGGC
GGGAAGGAGGGAGGGAATGGGAATAGACGGTCTTTTTTAAGAGTACGGGG
GTGCACAGGCAGATAGAGAATCCATATTTTAACGCAACATCAAAAATCAG
TCTTCTCACATGGAGAAGAAGACAGAGAAATAAGAATGAGAGACGGTAGG
AAGGGCGGGGATTAGAAAGAAGGAAAGAGCCGAACAGG back to topCoding sequence (CDS) from alignment at scaffold_113:27560..29797- >mRNA_12101 ID=mRNA_12101|Name=jgi.p|Nanoce1779_2|44173|organism=Nannochloropsis oceanica|type=CDS|length=6312bp|location=Sequence derived from alignment at scaffold_113:27560..29797- (Nannochloropsis oceanica)
GGGGAGAATGAGGAGGAGCTTCCCGAGCGCGTCCTTTTTGCCGTCCGTTT
CCATCACCTGAATGTGCCTAAAGCCCCGAGCTATGACGCCTGGGAGAACA
GGGAGGGCTGAATCGAGGTGGACATCTCCTCCTCCGTCCCTGCCCAATAC
ATTCTGGGGATGGTCAAGTCGTTCACACAAATCGTCTCGGTCGATCTGGC
TTTCGTCCTCCAGTTGGCACCACGCCCGCCATCATGGGCACTAAGATCCT
CCACACCTACCACCCACTCGCCAACGCCTTTGAGATTGAAGGTCATTCCT
CGCTGCGTCGAGGGCCCTTGGATGGTCAAAACAGCCGCCCTGCTCATGAA
GGCTCTTCCCCTTACGTGGGAGACGGGAAGCTCGACGCCCTCCTCAAGAA
CTTTCTAGAAGGTGATGATACCTTTCGGAATCAGAGGTCAAGGTCCCCTC
CTCCCAAGCCGCCTATAATCTGCTAGGTGTCGACCTCCTACTCTCGGAAG
AGAAACACAACTGCGCCTCCTCCTCCCCCTCCTCCTTTCTCTCCCGCTGT
CGTCGCCTCCCGCGTCCCTCCTCCGAATGCTTCATCATTGTCATGCATTT
CTCCCTGCCCTGGGGTTCCTTCCTCGCATATTTCTGGAACTGCTGGAGCC
AGCCGGATGCGACAGAATTTATGGTTCGGGGCATTAACTACATGAGTGAT
AGGATGAAGACGAGGAGCTTTTCCATGATGAGAGGATTGTACCCCTCCAC
GAGCATTTCACGATACCCGGGAGAAGGGGAGGATGGAGGGGGGAGAATGA
GGAGGAGCTTCCCGAGCGCGTCCTTTTTGCCGTCCGTTTCCATCACCTGA
ATGTGCCTAAAGCCCCGAGCTATGACGCCTGGGAGAACAGGGAGGGCTGA
ATCGAGGTGGACATCTCCTCCTCCGTCCCTGCCCAATACATTCTGGGGAT
GGTCAAGTCGTTCACACAAATCGTCTCGGTCGATCTGGCTTTCGTCCTCC
AGTTGGCACCACGCCCGCCATCATGGGCACTAAGATCCTCCACACCTACC
ACCCACTCGCCAACGCCTTTGAGATTGAAGGTCATTCCTCGCTGCGTCGA
GGGCCCTTGGATGGTCAAAACAGCCGCCCTGCTCATGAAGGCTCTTCCCC
TTACGTGGGAGACGGGAAGCTCGACGCCCTCCTCAAGAACTTTCTAGAAG
GTGATGATACCTTTCGGAATCAGAGGTCAAGGTCCCCTCCTCCCAAGCCG
CCTATAATCTGCTAGGTGTCGACCTCCTACTCTCGGAAGAGAAACACAAC
TGCGCCTCCTCCTCCCCCTCCTCCTTTCTCTCCCGCTGTCGTCGCCTCCC
GCGTCCCTCCTCCGAATGCTTCATCATTGTCATGCATTTCTCCCTGCCCT
GGGGTTCCTTCCTCGCATATTTCTGGAACTGCTGGAGCCAGCCGGATGCG
ACAGAATTTATGGTTCGGGGCATTAACTACATGAGTGATAGGATGAAGAC
GAGGAGCTTTTCCATGATGAGAGGATTGTACCCCTCCACGAGCATTTCAC
GATACCCGGGAGAAGGGGAGGATGGAGGGGGGAGAATGAGGAGGAGCTTC
CCGAGCGCGTCCTTTTTGCCGTCCGTTTCCATCACCTGAATGTGCCTAAA
GCCCCGAGCTATGACGCCTGGGAGAACAGGGAGGGCTGAATCGAGGTGGA
CATCTCCTCCTCCGTCCCTGCCCAATACATTCTGGGGATGGTCAAGTCGT
TCACACAAATCGTCTCGGTCGATCTGGCTTTCGTCCTCCAGTTGGCACCA
CGCCCGCCATCATGGGCACTAAGATCCTCCACACCTACCACCCACTCGCC
AACGCCTTTGAGATTGAAGGTCATTCCTCGCTGCGTCGAGGGCCCTTGGA
TGGTCAAAACAGCCGCCCTGCTCATGAAGGCTCTTCCCCTTACGTGGGAG
ACGGGAAGCTCGACGCCCTCCTCAAGAACTTTCTAGAAGGTGATGATACC
TTTCGGAATCAGAGGTCAAGGTCCCCTCCTCCCAAGCCGCCTATAATCTG
CTAGGTGTCGACCTCCTACTCTCGGAAGAGAAACACAACTGCGCCTCCTC
CTCCCCCTCCTCCTTTCTCTCCCGCTGTCGTCGCCTCCCGCGTCCCTCCT
CCGAATGCTTCATCATTGTCATGCATTTCTCCCTGCCCTGGGGTTCCTTC
CTCGCATATTTCTGGAACTGCTGGAGCCAGCCGGATGCGACAGAATTTAT
GGTTCGGGGCATTAACTACATGAGTGATAGGATGAAGACGAGGAGCTTTT
CCATGATGAGAGGATTGTACCCCTCCACGAGCATTTCACGATACCCGGGA
GAAGGGGAGGATGGAGGGGGGAGAATGAGGAGGAGCTTCCCGAGCGCGTC
CTTTTTGCCGTCCGTTTCCATCACCTGAATGTGCCTAAAGCCCCGAGCTA
TGACGCCTGGGAGAACAGGGAGGGCTGAATCGAGGTGGACATCTCCTCCT
CCGTCCCTGCCCAATACATTCTGGGGATGGTCAAGTCGTTCACACAAATC
GTCTCGGTCGATCTGGCTTTCGTCCTCCAGTTGGCACCACGCCCGCCATC
ATGGGCACTAAGATCCTCCACACCTACCACCCACTCGCCAACGCCTTTGA
GATTGAAGGTCATTCCTCGCTGCGTCGAGGGCCCTTGGATGGTCAAAACA
GCCGCCCTGCTCATGAAGGCTCTTCCCCTTACGTGGGAGACGGGAAGCTC
GACGCCCTCCTCAAGAACTTTCTAGAAGGTGATGATACCTTTCGGAATCA
GAGGTCAAGGTCCCCTCCTCCCAAGCCGCCTATAATCTGCTAGGTGTCGA
CCTCCTACTCTCGGAAGAGAAACACAACTGCGCCTCCTCCTCCCCCTCCT
CCTTTCTCTCCCGCTGTCGTCGCCTCCCGCGTCCCTCCTCCGAATGCTTC
ATCATTGTCATGCATTTCTCCCTGCCCTGGGGTTCCTTCCTCGCATATTT
CTGGAACTGCTGGAGCCAGCCGGATGCGACAGAATTTATGGTTCGGGGCA
TTAACTACATGAGTGATAGGATGAAGACGAGGAGCTTTTCCATGATGAGA
GGATTGTACCCCTCCACGAGCATTTCACGATACCCGGGAGAAGGGGAGGA
TGGAGGGGGGAGAATGAGGAGGAGCTTCCCGAGCGCGTCCTTTTTGCCGT
CCGTTTCCATCACCTGAATGTGCCTAAAGCCCCGAGCTATGACGCCTGGG
AGAACAGGGAGGGCTGAATCGAGGTGGACATCTCCTCCTCCGTCCCTGCC
CAATACATTCTGGGGATGGTCAAGTCGTTCACACAAATCGTCTCGGTCGA
TCTGGCTTTCGTCCTCCAGTTGGCACCACGCCCGCCATCATGGGCACTAA
GATCCTCCACACCTACCACCCACTCGCCAACGCCTTTGAGATTGAAGGTC
ATTCCTCGCTGCGTCGAGGGCCCTTGGATGGTCAAAACAGCCGCCCTGCT
CATGAAGGCTCTTCCCCTTACGTGGGAGACGGGAAGCTCGACGCCCTCCT
CAAGAACTTTCTAGAAGGTGATGATACCTTTCGGAATCAGAGGTCAAGGT
CCCCTCCTCCCAAGCCGCCTATAATCTGCTAGGTGTCGACCTCCTACTCT
CGGAAGAGAAACACAACTGCGCCTCCTCCTCCCCCTCCTCCTTTCTCTCC
CGCTGTCGTCGCCTCCCGCGTCCCTCCTCCGAATGCTTCATCATTGTCAT
GCATTTCTCCCTGCCCTGGGGTTCCTTCCTCGCATATTTCTGGAACTGCT
GGAGCCAGCCGGATGCGACAGAATTTATGGTTCGGGGCATTAACTACATG
AGTGATAGGATGAAGACGAGGAGCTTTTCCATGATGAGAGGATTGTACCC
CTCCACGAGCATTTCACGATACCCGGGAGAAGGGGAGGATGGAGGGGGGA
GAATGAGGAGGAGCTTCCCGAGCGCGTCCTTTTTGCCGTCCGTTTCCATC
ACCTGAATGTGCCTAAAGCCCCGAGCTATGACGCCTGGGAGAACAGGGAG
GGCTGAATCGAGGTGGACATCTCCTCCTCCGTCCCTGCCCAATACATTCT
GGGGATGGTCAAGTCGTTCACACAAATCGTCTCGGTCGATCTGGCTTTCG
TCCTCCAGTTGGCACCACGCCCGCCATCATGGGCACTAAGATCCTCCACA
CCTACCACCCACTCGCCAACGCCTTTGAGATTGAAGGTCATTCCTCGCTG
CGTCGAGGGCCCTTGGATGGTCAAAACAGCCGCCCTGCTCATGAAGGCTC
TTCCCCTTACGTGGGAGACGGGAAGCTCGACGCCCTCCTCAAGAACTTTC
TAGAAGGTGATGATACCTTTCGGAATCAGAGGTCAAGGTCCCCTCCTCCC
AAGCCGCCTATAATCTGCTAGGTGTCGACCTCCTACTCTCGGAAGAGAAA
CACAACTGCGCCTCCTCCTCCCCCTCCTCCTTTCTCTCCCGCTGTCGTCG
CCTCCCGCGTCCCTCCTCCGAATGCTTCATCATTGTCATGCATTTCTCCC
TGCCCTGGGGTTCCTTCCTCGCATATTTCTGGAACTGCTGGAGCCAGCCG
GATGCGACAGAATTTATGGTTCGGGGCATTAACTACATGAGTGATAGGAT
GAAGACGAGGAGCTTTTCCATGATGAGAGGATTGTACCCCTCCACGAGCA
TTTCACGATACCCGGGAGAAGGGGAGGATGGAGGGGGGAGAATGAGGAGG
AGCTTCCCGAGCGCGTCCTTTTTGCCGTCCGTTTCCATCACCTGAATGTG
CCTAAAGCCCCGAGCTATGACGCCTGGGAGAACAGGGAGGGCTGAATCGA
GGTGGACATCTCCTCCTCCGTCCCTGCCCAATACATTCTGGGGATGGTCA
AGTCGTTCACACAAATCGTCTCGGTCGATCTGGCTTTCGTCCTCCAGTTG
GCACCACGCCCGCCATCATGGGCACTAAGATCCTCCACACCTACCACCCA
CTCGCCAACGCCTTTGAGATTGAAGGTCATTCCTCGCTGCGTCGAGGGCC
CTTGGATGGTCAAAACAGCCGCCCTGCTCATGAAGGCTCTTCCCCTTACG
TGGGAGACGGGAAGCTCGACGCCCTCCTCAAGAACTTTCTAGAAGGTGAT
GATACCTTTCGGAATCAGAGGTCAAGGTCCCCTCCTCCCAAGCCGCCTAT
AATCTGCTAGGTGTCGACCTCCTACTCTCGGAAGAGAAACACAACTGCGC
CTCCTCCTCCCCCTCCTCCTTTCTCTCCCGCTGTCGTCGCCTCCCGCGTC
CCTCCTCCGAATGCTTCATCATTGTCATGCATTTCTCCCTGCCCTGGGGT
TCCTTCCTCGCATATTTCTGGAACTGCTGGAGCCAGCCGGATGCGACAGA
ATTTATGGTTCGGGGCATTAACTACATGAGTGATAGGATGAAGACGAGGA
GCTTTTCCATGATGAGAGGATTGTACCCCTCCACGAGCATTTCACGATAC
CCGGGAGAAGGGGAGGATGGAGGGGGGAGAATGAGGAGGAGCTTCCCGAG
CGCGTCCTTTTTGCCGTCCGTTTCCATCACCTGAATGTGCCTAAAGCCCC
GAGCTATGACGCCTGGGAGAACAGGGAGGGCTGAATCGAGGTGGACATCT
CCTCCTCCGTCCCTGCCCAATACATTCTGGGGATGGTCAAGTCGTTCACA
CAAATCGTCTCGGTCGATCTGGCTTTCGTCCTCCAGTTGGCACCACGCCC
GCCATCATGGGCACTAAGATCCTCCACACCTACCACCCACTCGCCAACGC
CTTTGAGATTGAAGGTCATTCCTCGCTGCGTCGAGGGCCCTTGGATGGTC
AAAACAGCCGCCCTGCTCATGAAGGCTCTTCCCCTTACGTGGGAGACGGG
AAGCTCGACGCCCTCCTCAAGAACTTTCTAGAAGGTGATGATACCTTTCG
GAATCAGAGGTCAAGGTCCCCTCCTCCCAAGCCGCCTATAATCTGCTAGG
TGTCGACCTCCTACTCTCGGAAGAGAAACACAACTGCGCCTCCTCCTCCC
CCTCCTCCTTTCTCTCCCGCTGTCGTCGCCTCCCGCGTCCCTCCTCCGAA
TGCTTCATCATTGTCATGCATTTCTCCCTGCCCTGGGGTTCCTTCCTCGC
ATATTTCTGGAACTGCTGGAGCCAGCCGGATGCGACAGAATTTATGGTTC
GGGGCATTAACTACATGAGTGATAGGATGAAGACGAGGAGCTTTTCCATG
ATGAGAGGATTGTACCCCTCCACGAGCATTTCACGATACCCGGGAGAAGG
GGAGGATGGAGG back to top
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