jgi.p|Nanoce1779_2|43711, mRNA_12097 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|43711
Unique Name	mRNA_12097
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	895
Alignment location	scaffold_113:10437..11331 +

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Properties


Property Name	Value
TranscriptId	43797
Track	FilteredModels2
ProteinId	43711

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_113	supercontig	scaffold_113:10437..11331 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|43711	gene_12097	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|43711	mRNA_12097-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_12097	CDS_12097	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_113:10437..11331+
coding sequence from alignment at scaffold_113:10437..11331+

mRNA sequence

>mRNA_12097 ID=mRNA_12097|Name=jgi.p|Nanoce1779_2|43711|organism=Nannochloropsis oceanica|type=mRNA|length=895bp
GGAAGGGAGGGAGGGAGGGAGAGGAGGTCAGAAGGAGCGCGATAGATGTG
ATGGCTGTCGCATGCTGCCTTCCCTCCCTTCCTCCCTCTCTTCCTTTATC
CTTCCCTCGCCTGTTCTCTGTTGCATTTCGTTCTTTCCTCCCAAACTTAC
TCACACCATTCACCCACATAAACCCAACATCCCTCCCTCCCTCCCTCCCT
CCCTCACCTGGCTTTTCTCCAAAGACCCCTCCTCCCTCCAACTTGAGCAA
TCCATTGTGGTCTTCCACAGCCATCTCCACTTGTGCGCGTCGAATCGCTT
CTTCGTGTGGGGAGAGGGAGGAAGAGGAGGTGGTGGGGGAGGAGGACGAG
GAGGGGAAGGAGAGGAACGGAGTCTCCTCCTCCGTCTCCTCTTGCTCTTC
ATCGGCCGCTGCTTTGGCGACGGCTTCTGTTTCTTCTTCTGCGTCTTTTC
TGTAGAAAGTATGAAGAGGGAGGATGATGGGATTAAAGGGTCCTTGCCCT
TCTCTCTCCATGCTCACAGACACCCCTCCCTTCATCCCCTCCCTCCTTCC
CTCCCTCCTTCCCTTCCTATCTCACCTTTTGCCTTTCGCCCCACCTCGGA
CGTGCCGCCACCACCATCCATTCGCTCTTCTACTTTTTGTTGTCCCTGCT
GCTGGTGCGGCTGCTGCTGCTGCTATATTTGTCGTGGGGGCATTGAGGAG
ATTGTTGATGCTGCTGCTGCTTCGGGAGAGGGAGGAGGCTAGGGTGGACG
GAGGAAGGAAAACGACAAGGAGAAAAAGGGCGGAGGACAGGTACAAAATG
CAAGAGCATCTCCTCCTTTTTCTCCTGCTGCTATGGCTGCTATCGGATGG
TTGCCGCATTTTGGCCTGTGGATGTGTTCGCATGCGGTGGGATTC

protein sequence of jgi.p|Nanoce1779_2|43711

>mRNA_12097-protein ID=mRNA_12097-protein|Name=jgi.p|Nanoce1779_2|43711|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MLPSLPSSLSSFILPSPVLCCISFFPPKLTHTIHPHKPNIPPSLPPSLTW
LFSKDPSSLQLEQSIVVFHSHLHLCASNRFFVWGEGGRGGGGGGGRGGEG
EERSLLLRLLLLFIGRCFGDGFCFFFCVFSVESMKREDDGIKGSLPFSLH
AHRHPSLHPLPPSLPPSLPISPFAFRPTSDVPPPPSIRSSTFCCPCCWCG
CCCCYICRGGIEEIVDAAAASGEGGG*

mRNA from alignment at scaffold_113:10437..11331+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12097 ID=mRNA_12097|Name=jgi.p|Nanoce1779_2|43711|organism=Nannochloropsis oceanica|type=mRNA|length=895bp|location=Sequence derived from alignment at scaffold_113:10437..11331+ (Nannochloropsis oceanica)
GGAAGGGAGGGAGGGAGGGAGAGGAGGTCAGAAGGAGCGCGATAGATGTG
ATGGCTGTCGCATGCTGCCTTCCCTCCCTTCCTCCCTCTCTTCCTTTATC
CTTCCCTCGCCTGTTCTCTGTTGCATTTCGTTCTTTCCTCCCAAACTTAC
TCACACCATTCACCCACATAAACCCAACATCCCTCCCTCCCTCCCTCCCT
CCCTCACCTGGCTTTTCTCCAAAGACCCCTCCTCCCTCCAACTTGAGCAA
TCCATTGTGGTCTTCCACAGCCATCTCCACTTGTGCGCGTCGAATCGCTT
CTTCGTGTGGGGAGAGGGAGGAAGAGGAGGTGGTGGGGGAGGAGGACGAG
GAGGGGAAGGAGAGGAACGGAGTCTCCTCCTCCGTCTCCTCTTGCTCTTC
ATCGGCCGCTGCTTTGGCGACGGCTTCTGTTTCTTCTTCTGCGTCTTTTC
TGTAGAAAGTATGAAGAGGGAGGATGATGGGATTAAAGGGTCCTTGCCCT
TCTCTCTCCATGCTCACAGACACCCCTCCCTTCATCCCCTCCCTCCTTCC
CTCCCTCCTTCCCTTCCTATCTCACCTTTTGCCTTTCGCCCCACCTCGGA
CGTGCCGCCACCACCATCCATTCGCTCTTCTACTTTTTGTTGTCCCTGCT
GCTGGTGCGGCTGCTGCTGCTGCTATATTTGTCGTGGGGGCATTGAGGAG
ATTGTTGATGCTGCTGCTGCTTCGGGAGAGGGAGGAGGCTAGGGTGGACG
GAGGAAGGAAAACGACAAGGAGAAAAAGGGCGGAGGACAGGTACAAAATG
CAAGAGCATCTCCTCCTTTTTCTCCTGCTGCTATGGCTGCTATCGGATGG
TTGCCGCATTTTGGCCTGTGGATGTGTTCGCATGCGGTGGGATTC

Coding sequence (CDS) from alignment at scaffold_113:10437..11331+

>mRNA_12097 ID=mRNA_12097|Name=jgi.p|Nanoce1779_2|43711|organism=Nannochloropsis oceanica|type=CDS|length=681bp|location=Sequence derived from alignment at scaffold_113:10437..11331+ (Nannochloropsis oceanica)
ATGCTGCCTTCCCTCCCTTCCTCCCTCTCTTCCTTTATCCTTCCCTCGCC
TGTTCTCTGTTGCATTTCGTTCTTTCCTCCCAAACTTACTCACACCATTC
ACCCACATAAACCCAACATCCCTCCCTCCCTCCCTCCCTCCCTCACCTGG
CTTTTCTCCAAAGACCCCTCCTCCCTCCAACTTGAGCAATCCATTGTGGT
CTTCCACAGCCATCTCCACTTGTGCGCGTCGAATCGCTTCTTCGTGTGGG
GAGAGGGAGGAAGAGGAGGTGGTGGGGGAGGAGGACGAGGAGGGGAAGGA
GAGGAACGGAGTCTCCTCCTCCGTCTCCTCTTGCTCTTCATCGGCCGCTG
CTTTGGCGACGGCTTCTGTTTCTTCTTCTGCGTCTTTTCTGTAGAAAGTA
TGAAGAGGGAGGATGATGGGATTAAAGGGTCCTTGCCCTTCTCTCTCCAT
GCTCACAGACACCCCTCCCTTCATCCCCTCCCTCCTTCCCTCCCTCCTTC
CCTTCCTATCTCACCTTTTGCCTTTCGCCCCACCTCGGACGTGCCGCCAC
CACCATCCATTCGCTCTTCTACTTTTTGTTGTCCCTGCTGCTGGTGCGGC
TGCTGCTGCTGCTATATTTGTCGTGGGGGCATTGAGGAGATTGTTGATGC
TGCTGCTGCTTCGGGAGAGGGAGGAGGCTAG

Synonyms

Publications