scaffold_102, scaffold_102 (supercontig) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	scaffold_102
Unique Name	scaffold_102
Type	supercontig
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	42996
Alignment location	jgi.p\|Nanoce1779_2\|29182:29435..31136 +
Alignment location	jgi.p\|Nanoce1779_2\|29182:29435..31136 +
Alignment location	CDS_12119:29475..29760 +
Alignment location	CDS_12119:30436..30905 +
Alignment location	CDS_12119:31011..31052 +
Alignment location	jgi.p\|Nanoce1779_2\|29201:33198..38172 -
Alignment location	jgi.p\|Nanoce1779_2\|29201:33198..38172 -
Alignment location	CDS_12120:37564..38080 -
Alignment location	CDS_12120:37240..37334 -
Alignment location	CDS_12120:36441..37039 -
Alignment location	CDS_12120:36147..36290 -
Alignment location	CDS_12120:35767..35922 -
Alignment location	CDS_12120:35461..35533 -
Alignment location	CDS_12120:35083..35172 -
Alignment location	CDS_12120:34758..34865 -
Alignment location	CDS_12120:34500..34565 -
Alignment location	CDS_12120:34235..34312 -
Alignment location	CDS_12120:33564..34109 -
Alignment location	jgi.p\|Nanoce1779_2\|615468:3479..5441 +
Alignment location	jgi.p\|Nanoce1779_2\|615468:3479..5441 +
Alignment location	CDS_12114:3500..3806 +
Alignment location	CDS_12114:3975..4099 +
Alignment location	CDS_12114:4520..4768 +
Alignment location	jgi.p\|Nanoce1779_2\|615473:5774..11048 -
Alignment location	jgi.p\|Nanoce1779_2\|615473:5774..11048 -
Alignment location	CDS_12116:10914..11023 -
Alignment location	CDS_12116:10351..10816 -
Alignment location	CDS_12116:9915..10092 -
Alignment location	CDS_12116:9563..9645 -
Alignment location	CDS_12116:9171..9273 -
Alignment location	CDS_12116:8882..8965 -
Alignment location	CDS_12116:8421..8623 -
Alignment location	CDS_12116:8157..8267 -
Alignment location	jgi.p\|Nanoce1779_2\|615508:39281..41700 -
Alignment location	jgi.p\|Nanoce1779_2\|615508:39281..41700 -
Alignment location	CDS_12121:41235..41309 -
Alignment location	CDS_12121:41077..41150 -
Alignment location	CDS_12121:40706..40924 -
Alignment location	CDS_12121:40433..40508 -
Alignment location	CDS_12121:40331..40397 -
Alignment location	CDS_12121:39967..40048 -
Alignment location	CDS_12121:39714..39828 -
Alignment location	CDS_12121:39415..39513 -
Alignment location	jgi.p\|Nanoce1779_2\|675396:1..2981 -
Alignment location	jgi.p\|Nanoce1779_2\|675396:1..2981 -
Alignment location	CDS_12113:58..2973 -
Alignment location	jgi.p\|Nanoce1779_2\|675399:13027..22641 -
Alignment location	jgi.p\|Nanoce1779_2\|675399:13027..22641 -
Alignment location	CDS_12117:22605..22641 -
Alignment location	CDS_12117:22080..22329 -
Alignment location	CDS_12117:21850..21949 -
Alignment location	CDS_12117:21527..21664 -
Alignment location	CDS_12117:21367..21408 -
Alignment location	CDS_12117:21115..21223 -
Alignment location	CDS_12117:20698..20824 -
Alignment location	CDS_12117:20391..20490 -
Alignment location	CDS_12117:20132..20245 -
Alignment location	CDS_12117:19942..20017 -
Alignment location	CDS_12117:19715..19842 -
Alignment location	CDS_12117:19444..19525 -
Alignment location	CDS_12117:19035..19123 -
Alignment location	CDS_12117:18814..18891 -
Alignment location	CDS_12117:18444..18613 -
Alignment location	CDS_12117:18107..18181 -
Alignment location	CDS_12117:17912..17992 -
Alignment location	CDS_12117:17644..17726 -
Alignment location	CDS_12117:17432..17524 -
Alignment location	CDS_12117:17223..17294 -
Alignment location	CDS_12117:17015..17118 -
Alignment location	CDS_12117:16707..16857 -
Alignment location	CDS_12117:16210..16505 -
Alignment location	CDS_12117:15197..15403 -
Alignment location	CDS_12117:14830..15072 -
Alignment location	CDS_12117:14069..14646 -
Alignment location	CDS_12117:13027..13957 -
Alignment location	jgi.p\|Nanoce1779_2\|29182:29475..31052 +
Alignment location	jgi.p\|Nanoce1779_2\|29201:33564..38080 -
Alignment location	jgi.p\|Nanoce1779_2\|615468:3500..4768 +
Alignment location	jgi.p\|Nanoce1779_2\|615473:8157..11023 -
Alignment location	jgi.p\|Nanoce1779_2\|615508:39415..41309 -
Alignment location	jgi.p\|Nanoce1779_2\|675396:58..2973 -
Alignment location	jgi.p\|Nanoce1779_2\|675399:13027..22641 -
Alignment location	ncniL031:2..41700 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
jgi.p\|Nanoce1779_2\|29182	gene	jgi.p\|Nanoce1779_2\|29182:29435..31136 +
jgi.p\|Nanoce1779_2\|29182	mRNA	jgi.p\|Nanoce1779_2\|29182:29435..31136 +
CDS_12119	CDS	CDS_12119:29475..29760 +
CDS_12119	CDS	CDS_12119:30436..30905 +
CDS_12119	CDS	CDS_12119:31011..31052 +
jgi.p\|Nanoce1779_2\|29201	gene	jgi.p\|Nanoce1779_2\|29201:33198..38172 -
jgi.p\|Nanoce1779_2\|29201	mRNA	jgi.p\|Nanoce1779_2\|29201:33198..38172 -
CDS_12120	CDS	CDS_12120:37564..38080 -
CDS_12120	CDS	CDS_12120:37240..37334 -
CDS_12120	CDS	CDS_12120:36441..37039 -
CDS_12120	CDS	CDS_12120:36147..36290 -
CDS_12120	CDS	CDS_12120:35767..35922 -
CDS_12120	CDS	CDS_12120:35461..35533 -
CDS_12120	CDS	CDS_12120:35083..35172 -
CDS_12120	CDS	CDS_12120:34758..34865 -
CDS_12120	CDS	CDS_12120:34500..34565 -
CDS_12120	CDS	CDS_12120:34235..34312 -
CDS_12120	CDS	CDS_12120:33564..34109 -
jgi.p\|Nanoce1779_2\|615468	gene	jgi.p\|Nanoce1779_2\|615468:3479..5441 +
jgi.p\|Nanoce1779_2\|615468	mRNA	jgi.p\|Nanoce1779_2\|615468:3479..5441 +
CDS_12114	CDS	CDS_12114:3500..3806 +
CDS_12114	CDS	CDS_12114:3975..4099 +
CDS_12114	CDS	CDS_12114:4520..4768 +
jgi.p\|Nanoce1779_2\|615473	gene	jgi.p\|Nanoce1779_2\|615473:5774..11048 -
jgi.p\|Nanoce1779_2\|615473	mRNA	jgi.p\|Nanoce1779_2\|615473:5774..11048 -
CDS_12116	CDS	CDS_12116:10914..11023 -
CDS_12116	CDS	CDS_12116:10351..10816 -
CDS_12116	CDS	CDS_12116:9915..10092 -
CDS_12116	CDS	CDS_12116:9563..9645 -
CDS_12116	CDS	CDS_12116:9171..9273 -
CDS_12116	CDS	CDS_12116:8882..8965 -
CDS_12116	CDS	CDS_12116:8421..8623 -
CDS_12116	CDS	CDS_12116:8157..8267 -
jgi.p\|Nanoce1779_2\|615508	gene	jgi.p\|Nanoce1779_2\|615508:39281..41700 -
jgi.p\|Nanoce1779_2\|615508	mRNA	jgi.p\|Nanoce1779_2\|615508:39281..41700 -
CDS_12121	CDS	CDS_12121:41235..41309 -
CDS_12121	CDS	CDS_12121:41077..41150 -
CDS_12121	CDS	CDS_12121:40706..40924 -
CDS_12121	CDS	CDS_12121:40433..40508 -
CDS_12121	CDS	CDS_12121:40331..40397 -
CDS_12121	CDS	CDS_12121:39967..40048 -
CDS_12121	CDS	CDS_12121:39714..39828 -
CDS_12121	CDS	CDS_12121:39415..39513 -
jgi.p\|Nanoce1779_2\|675396	gene	jgi.p\|Nanoce1779_2\|675396:1..2981 -
jgi.p\|Nanoce1779_2\|675396	mRNA	jgi.p\|Nanoce1779_2\|675396:1..2981 -
CDS_12113	CDS	CDS_12113:58..2973 -
jgi.p\|Nanoce1779_2\|675399	gene	jgi.p\|Nanoce1779_2\|675399:13027..22641 -
jgi.p\|Nanoce1779_2\|675399	mRNA	jgi.p\|Nanoce1779_2\|675399:13027..22641 -
CDS_12117	CDS	CDS_12117:22605..22641 -
CDS_12117	CDS	CDS_12117:22080..22329 -
CDS_12117	CDS	CDS_12117:21850..21949 -
CDS_12117	CDS	CDS_12117:21527..21664 -
CDS_12117	CDS	CDS_12117:21367..21408 -
CDS_12117	CDS	CDS_12117:21115..21223 -
CDS_12117	CDS	CDS_12117:20698..20824 -
CDS_12117	CDS	CDS_12117:20391..20490 -
CDS_12117	CDS	CDS_12117:20132..20245 -
CDS_12117	CDS	CDS_12117:19942..20017 -
CDS_12117	CDS	CDS_12117:19715..19842 -
CDS_12117	CDS	CDS_12117:19444..19525 -
CDS_12117	CDS	CDS_12117:19035..19123 -
CDS_12117	CDS	CDS_12117:18814..18891 -
CDS_12117	CDS	CDS_12117:18444..18613 -
CDS_12117	CDS	CDS_12117:18107..18181 -
CDS_12117	CDS	CDS_12117:17912..17992 -
CDS_12117	CDS	CDS_12117:17644..17726 -
CDS_12117	CDS	CDS_12117:17432..17524 -
CDS_12117	CDS	CDS_12117:17223..17294 -
CDS_12117	CDS	CDS_12117:17015..17118 -
CDS_12117	CDS	CDS_12117:16707..16857 -
CDS_12117	CDS	CDS_12117:16210..16505 -
CDS_12117	CDS	CDS_12117:15197..15403 -
CDS_12117	CDS	CDS_12117:14830..15072 -
CDS_12117	CDS	CDS_12117:14069..14646 -
CDS_12117	CDS	CDS_12117:13027..13957 -
jgi.p\|Nanoce1779_2\|29182	polypeptide	jgi.p\|Nanoce1779_2\|29182:29475..31052 +
jgi.p\|Nanoce1779_2\|29201	polypeptide	jgi.p\|Nanoce1779_2\|29201:33564..38080 -
jgi.p\|Nanoce1779_2\|615468	polypeptide	jgi.p\|Nanoce1779_2\|615468:3500..4768 +
jgi.p\|Nanoce1779_2\|615473	polypeptide	jgi.p\|Nanoce1779_2\|615473:8157..11023 -
jgi.p\|Nanoce1779_2\|615508	polypeptide	jgi.p\|Nanoce1779_2\|615508:39415..41309 -
jgi.p\|Nanoce1779_2\|675396	polypeptide	jgi.p\|Nanoce1779_2\|675396:58..2973 -
jgi.p\|Nanoce1779_2\|675399	polypeptide	jgi.p\|Nanoce1779_2\|675399:13027..22641 -
ncniL031	syntenic_region	ncniL031:2..41700 +

Analyses

This supercontig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gennome assembly for N. oceanica CCMP1779	2018-02-01

Annotated Terms

Homology

Relationships

Sequences

Synonyms

Publications