jgi.p|Nanoce1779_2|615468, mRNA_12114 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|615468
Unique NamemRNA_12114
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1062
Alignment locationscaffold_102:3479..5441 +

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Properties
Property NameValue
TranscriptId615554
TrackFilteredModels2
ProteinId615468
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:3479..5441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|615468gene_12114Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|615468mRNA_12114-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_12114CDS_12114Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_12114 ID=mRNA_12114|Name=jgi.p|Nanoce1779_2|615468|organism=Nannochloropsis oceanica|type=mRNA|length=1062bp
AGTGCACAGGAAAGCCACATCATGACTGGCGGTCGCTGTATCTTGTTCCT
TTTTCTGGCCATCGCTAGCACGGCTTCAGCGCAGCCACAGCACCTGCAGC
AAGGCTCCTCCCTCGGATCCATGCCCACATTCCAAATTCAAAGCCACGCC
GTCACACCCGCCACTGGTCCGACCCCAATGCAATTTATACCGGTAGCATC
ACCCGCAGTGCCGACGCCAAAGGCAGCAGGAGGGAACACATCTCCTGAAT
CGCTCTACAAGCAGCAACGCGTGGAGTATACTTTCCCGGTGCCAGTCACA
CTAGCTCCAGTCCAACGGGATGGGAATGGCTGGACCAAGGCCTTCGCCGC
CTTTCCTTGCTTGCAATGTTACGTGACAGACGCCGGCTGTTATTATGAGT
ACACACAACAAGCCAAGACTCAGATCGCATTCCTATCCGGAGAGCAGTTC
AAGAGGCTCCTCACCTCATGCGTATCTACTCCGGGCAAAGTCACTCAAAG
CTGCTGGCATGCCGCGGGGCTCGAGAATGTGAAGCTGGAGGATTATCAGT
ACGAGGTTTACGCCTACCACGATAAGGTCAAGAAAGGAGGGAGGGAGGGA
GGAAGGGAGGCAGGGAGGGAGGGAGGAAGAAAATATCAAATTACTGATTG
CATTTTTTGCATCGCCATTTTCTTGGTGACAGGGTGCGGAGGCCGTTTTT
GAGGGAACATACCTTGTCTTTAACAATGGCAACGACCGAGCTGACATTAA
CTATGGCATGGCCTACTTTGGCCTCAAATCCGGGGCGCCGTCTGAGCCAG
GGGGACTGGTCGTTGCGAAAGGAGAAGGCAAGATTCCCACCCGGCTAAAG
GAGGTCGTCCAAGGGCTTAAGCATCCCATCACCATCCCCAAAGCCACAAA
TACCATCGCTGCCGCCATTCCTCCCACTCAGCAGCAGCAACAACAGCAGC
GGCGACCAAAAGCCCTGCGTATTCCCCCTCCCGTGGAATTAAGGAACAAG
GCGGAGGAAGGGAAGGAAGGAGAATGGACGCGTCACGCCCTTGGCCTGGG
TAACGAGGTAGC
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protein sequence of jgi.p|Nanoce1779_2|615468

>mRNA_12114-protein ID=mRNA_12114-protein|Name=jgi.p|Nanoce1779_2|615468|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MTGGRCILFLFLAIASTASAQPQHLQQGSSLGSMPTFQIQSHAVTPATGP
TPMQFIPVASPAVPTPKAAGGNTSPESLYKQQRVEYTFPVPVTLAPVQRD
GNGWTKAFAAFPCLQCYVTDAGCYYEYTQQAKTQIAFLSGEQFKRLLTSC
VSTPGKVTQSCWHAAGLENVKLEDYQYEVYAYHDKVKKGGREGGREAGRE
GGRKYQITDCIFCIAIFLVTGCGGRF*
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mRNA from alignment at scaffold_102:3479..5441+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12114 ID=mRNA_12114|Name=jgi.p|Nanoce1779_2|615468|organism=Nannochloropsis oceanica|type=mRNA|length=1963bp|location=Sequence derived from alignment at scaffold_102:3479..5441+ (Nannochloropsis oceanica)
AGTGCACAGGAAAGCCACATCATGACTGGCGGTCGCTGTATCTTGTTCCT
TTTTCTGGCCATCGCTAGCACGGCTTCAGCGCAGCCACAGCACCTGCAGC
AAGGCTCCTCCCTCGGATCCATGCCCACATTCCAAATTCAAAGCCACGCC
GTCACACCCGCCACTGGTCCGACCCCAATGCAATTTATACCGGTAGCATC
ACCCGCAGTGCCGACGCCAAAGGCAGCAGGAGGGAACACATCTCCTGAAT
CGCTCTACAAGCAGCAACGCGTGGAGTATACTTTCCCGGTGCCAGTCACA
CTAGCTCCAGTCCAACGGGATGGGAATGGTGAGCACTATCTGTTGTTGGA
TGATAGGGAACAAATCTGTGGTGGAGCGTATTTAATAATGGCATCATTCT
GGGTCACAATTTTGGGTCTTAATTACGACTGCCCCCTCTTCTCTTCTTGC
CTCTCCTGCCTTCCCTCCCTCCCTCCCTCCCTCTTCCTCTTTTCAGGCTG
GACCAAGGCCTTCGCCGCCTTTCCTTGCTTGCAATGTTACGTGACAGACG
CCGGCTGTTATTATGAGTACACACAACAAGCCAAGACTCAGATCGCATTC
CTATCCGGAGAGCAGTTCAAGGCATGTCTCTCTTTCCCTCCATCCCTGTT
CCCTTTCATTTCTTCCTCCCCTTGGAGTACCTCCCAGCCACTTCTTCTCC
TTTCCGTCATTCCCTCCTTTCTCTAATCACTTCTTGCTTTCTTACCCTTT
CGACCTTCACCACATTCCTGTCAACGTTCCCGCATCGGGAGTAATTCACA
AAGATGGCAGACACAGACCGACCTATGAAGGCGTCCATGAAGCTGGTAGA
TTCATTTATCGGGATATTTAAATTTATCGAGCTGATGATCCTTCTTGACA
TTTAGTCTCACTTTCCTTCCCTCCTTTCCTTCCCAAAGACCCTCCTCCCC
TCCTTTATCACCACCCTCGAGCAAGCCCCTAATCCCCCCCTCCCTCCCTC
CCTTCCTCCCTCCCTCCTCCCCCTCTCCCTCCGCCCGTCAGAGGCTCCTC
ACCTCATGCGTATCTACTCCGGGCAAAGTCACTCAAAGCTGCTGGCATGC
CGCGGGGCTCGAGAATGTGAAGCTGGAGGATTATCAGTACGAGGTTTACG
CCTACCACGATAAGGTCAAGAAAGGAGGGAGGGAGGGAGGAAGGGAGGCA
GGGAGGGAGGGAGGAAGAAAATATCAAATTACTGATTGCATTTTTTGCAT
CGCCATTTTCTTGGTGACAGGGTGCGGAGGCCGTTTTTGAGGGAACATAC
CTTGTCTTTAACAATGGCAACGACCGAGGTACGTCCCTCCCTCCCTCCTT
CCCTCCCTCCTTCCCTCCCTCCCTCTAATCTTCTCACCCTTTCCCCTTCC
CTTCCTGCCTACCTGCCTCCCTTCCTCGCAGCTGACATTAACTATGGCAT
GGCCTACTTTGGCCTCAAATCCGGGGCGCCGTCTGAGCCAGGGGGACTGG
TCGTTGCGAAAGGAGAAGGTAAGAAGGGACGGAGGGAGGGAGGGAGGGCG
GGAGGGCGGGAGTGAGGGTGAATGGATAGCCGGCAGGATCAATGAGAGCG
GAAGAAGCATAGAAGGAGGGAGGGGCTGAAGAAGAGTAGTCGCGAGCACG
TCTCTAAAGACAAGACTCCATACCCTCCCCTCCCTCCCTCCCTTCCTCCC
TCCCTCCCTCCCTCCCTCCCTATCCCAGGCAAGATTCCCACCCGGCTAAA
GGAGGTCGTCCAAGGGCTTAAGCATCCCATCACCATCCCCAAAGCCACAA
ATACCATCGCTGCCGCCATTCCTCCCACTCAGCAGCAGCAACAACAGCAG
CGGCGACCAAAAGCCCTGCGTATTCCCCCTCCCGTGGAATTAAGGAACAA
GGCGGAGGAAGGGAAGGAAGGAGAATGGACGCGTCACGCCCTTGGCCTGG
GTAACGAGGTAGC
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Coding sequence (CDS) from alignment at scaffold_102:3479..5441+

>mRNA_12114 ID=mRNA_12114|Name=jgi.p|Nanoce1779_2|615468|organism=Nannochloropsis oceanica|type=CDS|length=2043bp|location=Sequence derived from alignment at scaffold_102:3479..5441+ (Nannochloropsis oceanica)
ATGACTGGCGGTCGCTGTATCTTGTTCCTTTTTCTGGCCATCGCTAGCAC
GGCTTCAGCGCAGCCACAGCACCTGCAGCAAGGCTCCTCCCTCGGATCCA
TGCCCACATTCCAAATTCAAAGCCACGCCGTCACACCCGCCACTGGTCCG
ACCCCAATGCAATTTATACCGGTAGCATCACCCGCAGTGCCGACGCCAAA
GGCAGCAGGAGGGAACACATCTCCTGAATCGCTCTACAAGCAGCAACGCG
TGGAGTATACTTTCCCGGTGCCAGTCACACTAGCTCCAGTCCAACGGGAT
GGGAATGGCTGGACCAAGGCCTTCGCCGCCTTTCCTTGCTTGCAATGTTA
CGTGACAGACGCCGGCTGTTATTATGAGTACACACAACAAGCCAAGACTC
AGATCGCATTCCTATCCGGAGAGCAGTTCAAGAGGCTCCTCACCTCATGC
GTATCTACTCCGGGCAAAGTCACTCAAAGCTGCTGGCATGCCGCGGGGCT
CGAGAATGTGAAGCTGGAGGATTATCAGTACGAGGTTTACGCCTACCACG
ATAAGGTCAAGAAAGGAGGGAGGGAGGGAGGAAGGGAGGCAGGGAGGGAG
GGAGGAAGAAAATATCAAATTACTGATTGCATTTTTTGCATCGCCATTTT
CTTGGTGACAGGGTGCGGAGGCCGTTTTTGAATGACTGGCGGTCGCTGTA
TCTTGTTCCTTTTTCTGGCCATCGCTAGCACGGCTTCAGCGCAGCCACAG
CACCTGCAGCAAGGCTCCTCCCTCGGATCCATGCCCACATTCCAAATTCA
AAGCCACGCCGTCACACCCGCCACTGGTCCGACCCCAATGCAATTTATAC
CGGTAGCATCACCCGCAGTGCCGACGCCAAAGGCAGCAGGAGGGAACACA
TCTCCTGAATCGCTCTACAAGCAGCAACGCGTGGAGTATACTTTCCCGGT
GCCAGTCACACTAGCTCCAGTCCAACGGGATGGGAATGGCTGGACCAAGG
CCTTCGCCGCCTTTCCTTGCTTGCAATGTTACGTGACAGACGCCGGCTGT
TATTATGAGTACACACAACAAGCCAAGACTCAGATCGCATTCCTATCCGG
AGAGCAGTTCAAGAGGCTCCTCACCTCATGCGTATCTACTCCGGGCAAAG
TCACTCAAAGCTGCTGGCATGCCGCGGGGCTCGAGAATGTGAAGCTGGAG
GATTATCAGTACGAGGTTTACGCCTACCACGATAAGGTCAAGAAAGGAGG
GAGGGAGGGAGGAAGGGAGGCAGGGAGGGAGGGAGGAAGAAAATATCAAA
TTACTGATTGCATTTTTTGCATCGCCATTTTCTTGGTGACAGGGTGCGGA
GGCCGTTTTTGAATGACTGGCGGTCGCTGTATCTTGTTCCTTTTTCTGGC
CATCGCTAGCACGGCTTCAGCGCAGCCACAGCACCTGCAGCAAGGCTCCT
CCCTCGGATCCATGCCCACATTCCAAATTCAAAGCCACGCCGTCACACCC
GCCACTGGTCCGACCCCAATGCAATTTATACCGGTAGCATCACCCGCAGT
GCCGACGCCAAAGGCAGCAGGAGGGAACACATCTCCTGAATCGCTCTACA
AGCAGCAACGCGTGGAGTATACTTTCCCGGTGCCAGTCACACTAGCTCCA
GTCCAACGGGATGGGAATGGCTGGACCAAGGCCTTCGCCGCCTTTCCTTG
CTTGCAATGTTACGTGACAGACGCCGGCTGTTATTATGAGTACACACAAC
AAGCCAAGACTCAGATCGCATTCCTATCCGGAGAGCAGTTCAAGAGGCTC
CTCACCTCATGCGTATCTACTCCGGGCAAAGTCACTCAAAGCTGCTGGCA
TGCCGCGGGGCTCGAGAATGTGAAGCTGGAGGATTATCAGTACGAGGTTT
ACGCCTACCACGATAAGGTCAAGAAAGGAGGGAGGGAGGGAGGAAGGGAG
GCAGGGAGGGAGGGAGGAAGAAAATATCAAATTACTGATTGCATTTTTTG
CATCGCCATTTTCTTGGTGACAGGGTGCGGAGGCCGTTTTTGA
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Synonyms
Publications