jgi.p|Nanoce1779_2|29182, mRNA_12119 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|29182
Unique NamemRNA_12119
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length922
Alignment locationscaffold_102:29435..31136 +

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Properties
Property NameValue
TranscriptId29268
TrackFilteredModels2
ProteinId29182
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:29435..31136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|29182gene_12119Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|29182mRNA_12119-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_12119CDS_12119Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_12119 ID=mRNA_12119|Name=jgi.p|Nanoce1779_2|29182|organism=Nannochloropsis oceanica|type=mRNA|length=922bp
CAGACACAGATCACAGTCCACTCGGGCCTCTGCCGGCCCAATGACGTTCG
CTTACACATCTTCTTATGCTCCTATCGGGGGCTGCGGTCCCACCGCTGAG
CAGCGGCGCCATCAGAACCAGTGCCACTGGCCCCGTGGAATGAAGCAGAA
GCTTTATGGTTTGTTGCCTATTTCCTCTGACGATAGAATGACATATGACG
GTGCTGCAGCCCTGTGCAGCCTAGGCTGCAGCTTGGCAACACGCTCCGCC
GCTGCTGACTCCCTCCTCGTCTCTACGCCGCCTTACTCTTCGCCTTGGGC
CTCTTATCTCTCAGCAGCAAATCACGTTTTAGAACTTCAAAAGCACACGG
CCGACAAGTCATCGCAATTCTTCCTGACCCGGCACCAGCAACACTTCAGC
CTATCGCCCGTTCATCAACACCCAACCCTTCAGCGTGAGACGACCAATGT
ACTCTCCCAGGTCTCGCCGTCTTCTCAACCACAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGAAGCAGCGGCAGCATTTCAAATATCCGCCGCTA
CAGCTCCATTCCACCCCAGAATGCCTAGCGCAGTCGGTCAAGAAGCAGTG
CGTGATGGCGTCGATCGACACTTTTCCGATGAATGAATTCCCGCTCCCCG
AGCACGTGGAGGCCGAGCTCTACCCACCGATTGCACCGCTATCCCAGACC
TTCCTGCCGCTGCAAGAGATCCAAGCAGGTGTGATGGGTGTGTCGGTGGG
ATTACTGCCTGGCAGATGCTCCAAGATCATGGGAAAGTACCTTCCGAGAA
GCAGCGACGAGCGACGAAAGAGAACTTATCGGGCTTAACGGCAGAGGAGA
AGCTAGAGCGACGCAAGATGCGCGCACGCATGTACAACCGCCTGTCTCGT
CAACGCTGCGACCAGCTGCGTA
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protein sequence of jgi.p|Nanoce1779_2|29182

>mRNA_12119-protein ID=mRNA_12119-protein|Name=jgi.p|Nanoce1779_2|29182|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MTFAYTSSYAPIGGCGPTAEQRRHQNQCHWPRGMKQKLYGLLPISSDDRM
TYDGAAALCSLGCSLATRSAAADSLLVSTPPYSSPWASYLSAANHVLELQ
KHTADKSSQFFLTRHQQHFSLSPVHQHPTLQRETTNVLSQVSPSSQPQQQ
QQQQQQQQQKQRQHFKYPPLQLHSTPECLAQSVKKQCVMASIDTFPMNEF
PLPEHVEAELYPPIAPLSQTFLPLQEIQAGVMGVSVGLLPGRCSKIMGKY
LPRSSDERRKRTYRA*
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mRNA from alignment at scaffold_102:29435..31136+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12119 ID=mRNA_12119|Name=jgi.p|Nanoce1779_2|29182|organism=Nannochloropsis oceanica|type=mRNA|length=1702bp|location=Sequence derived from alignment at scaffold_102:29435..31136+ (Nannochloropsis oceanica)
CAGACACAGATCACAGTCCACTCGGGCCTCTGCCGGCCCAATGACGTTCG
CTTACACATCTTCTTATGCTCCTATCGGGGGCTGCGGTCCCACCGCTGAG
CAGCGGCGCCATCAGAACCAGTGCCACTGGCCCCGTGGAATGAAGCAGAA
GCTTTATGGTTTGTTGCCTATTTCCTCTGACGATAGAATGACATATGACG
GTGCTGCAGCCCTGTGCAGCCTAGGCTGCAGCTTGGCAACACGCTCCGCC
GCTGCTGACTCCCTCCTCGTCTCTACGCCGCCTTACTCTTCGCCTTGGGC
CTCTTATCTCTCAGCAGCAAATCACGGTACGTTTTTCAAACGCGATTCAC
TCGATCCGCTTTATACCTCATCCCTGGCCTCGTACGTATCCCTTCCTCCT
CCCCACCTCCTTGTTCCACCCCCTCGTCCTTCCCGCCCTTCTCCTCCCTT
CTCCTTCTCCCCATCCTCCTCCTCGCTTCCTCCTCCCCCCTTCTCTTCCC
CCCATCCTCCCTCTCCTTTCCTCCTCCTCCACTCCTCCTTATTCCTTCTC
TTCCTACCCCATCCTTTTTCGCCCTCCTTCTCCTTCTCCCACCTCCTCCC
CTCCCCGCCTCCCTCCTTTTCTTACTCCTCTTCGTTCTCCTTCCTCCCTC
CCCCCCGCGTATTTCCTTTGCGCAAACTTTTCAACTTGAACTGGTATTTC
CCAATCAGCGTATCCATTGACAGGATTTGTAGGTTTACAATCACAGGCTT
TATGATCATTGAGGTTCATTGTGCTAGTGCTCACTTTTTGTTTGAATTTA
TGGCGGGGACAATATGTGATATGGTTAAAGAGACTGCTCCCTCCATTGCC
ATTATTTGTTTCGCTATCAGCATTGTGAGCGGGAAATAGGCGCGTCCCAG
GTCAGGCAACCCTCTACGTGTACACCGGCTACATGTAGCGTATCTATTCA
TTTAGACAAGTCCGCTCTCTCACATACACATATAATCCTCCATACACACA
GTTTTAGAACTTCAAAAGCACACGGCCGACAAGTCATCGCAATTCTTCCT
GACCCGGCACCAGCAACACTTCAGCCTATCGCCCGTTCATCAACACCCAA
CCCTTCAGCGTGAGACGACCAATGTACTCTCCCAGGTCTCGCCGTCTTCT
CAACCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCG
GCAGCATTTCAAATATCCGCCGCTACAGCTCCATTCCACCCCAGAATGCC
TAGCGCAGTCGGTCAAGAAGCAGTGCGTGATGGCGTCGATCGACACTTTT
CCGATGAATGAATTCCCGCTCCCCGAGCACGTGGAGGCCGAGCTCTACCC
ACCGATTGCACCGCTATCCCAGACCTTCCTGCCGCTGCAAGAGATCCAAG
CAGGTGTGATGGGTGTGTCGGTGGGATTACTGCCTGGCAGATGCTCCAAG
ATCATGGGAAAGTACCTTCCGGTAAGGGATATGATGGATATGTGCTGGGT
GCTTGAGTGTTTGGTGTGATCTATTTTGGGCACTCACTCTTTCTCTCCAT
TTACTCGTTCTTCCTACAGAGCATAGAGAAGCAGCGACGAGCGACGAAAG
AGAACTTATCGGGCTTAACGGCAGAGGAGAAGCTAGAGCGACGCAAGATG
CGCGCACGCATGTACAACCGCCTGTCTCGTCAACGCTGCGACCAGCTGCG
TA
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Coding sequence (CDS) from alignment at scaffold_102:29435..31136+

>mRNA_12119 ID=mRNA_12119|Name=jgi.p|Nanoce1779_2|29182|organism=Nannochloropsis oceanica|type=CDS|length=2394bp|location=Sequence derived from alignment at scaffold_102:29435..31136+ (Nannochloropsis oceanica)
ATGACGTTCGCTTACACATCTTCTTATGCTCCTATCGGGGGCTGCGGTCC
CACCGCTGAGCAGCGGCGCCATCAGAACCAGTGCCACTGGCCCCGTGGAA
TGAAGCAGAAGCTTTATGGTTTGTTGCCTATTTCCTCTGACGATAGAATG
ACATATGACGGTGCTGCAGCCCTGTGCAGCCTAGGCTGCAGCTTGGCAAC
ACGCTCCGCCGCTGCTGACTCCCTCCTCGTCTCTACGCCGCCTTACTCTT
CGCCTTGGGCCTCTTATCTCTCAGCAGCAAATCACGTTTTAGAACTTCAA
AAGCACACGGCCGACAAGTCATCGCAATTCTTCCTGACCCGGCACCAGCA
ACACTTCAGCCTATCGCCCGTTCATCAACACCCAACCCTTCAGCGTGAGA
CGACCAATGTACTCTCCCAGGTCTCGCCGTCTTCTCAACCACAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCGGCAGCATTTCAAATA
TCCGCCGCTACAGCTCCATTCCACCCCAGAATGCCTAGCGCAGTCGGTCA
AGAAGCAGTGCGTGATGGCGTCGATCGACACTTTTCCGATGAATGAATTC
CCGCTCCCCGAGCACGTGGAGGCCGAGCTCTACCCACCGATTGCACCGCT
ATCCCAGACCTTCCTGCCGCTGCAAGAGATCCAAGCAGGTGTGATGGGTG
TGTCGGTGGGATTACTGCCTGGCAGATGCTCCAAGATCATGGGAAAGTAC
CTTCCGAGAAGCAGCGACGAGCGACGAAAGAGAACTTATCGGGCTTAAAT
GACGTTCGCTTACACATCTTCTTATGCTCCTATCGGGGGCTGCGGTCCCA
CCGCTGAGCAGCGGCGCCATCAGAACCAGTGCCACTGGCCCCGTGGAATG
AAGCAGAAGCTTTATGGTTTGTTGCCTATTTCCTCTGACGATAGAATGAC
ATATGACGGTGCTGCAGCCCTGTGCAGCCTAGGCTGCAGCTTGGCAACAC
GCTCCGCCGCTGCTGACTCCCTCCTCGTCTCTACGCCGCCTTACTCTTCG
CCTTGGGCCTCTTATCTCTCAGCAGCAAATCACGTTTTAGAACTTCAAAA
GCACACGGCCGACAAGTCATCGCAATTCTTCCTGACCCGGCACCAGCAAC
ACTTCAGCCTATCGCCCGTTCATCAACACCCAACCCTTCAGCGTGAGACG
ACCAATGTACTCTCCCAGGTCTCGCCGTCTTCTCAACCACAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCGGCAGCATTTCAAATATC
CGCCGCTACAGCTCCATTCCACCCCAGAATGCCTAGCGCAGTCGGTCAAG
AAGCAGTGCGTGATGGCGTCGATCGACACTTTTCCGATGAATGAATTCCC
GCTCCCCGAGCACGTGGAGGCCGAGCTCTACCCACCGATTGCACCGCTAT
CCCAGACCTTCCTGCCGCTGCAAGAGATCCAAGCAGGTGTGATGGGTGTG
TCGGTGGGATTACTGCCTGGCAGATGCTCCAAGATCATGGGAAAGTACCT
TCCGAGAAGCAGCGACGAGCGACGAAAGAGAACTTATCGGGCTTAAATGA
CGTTCGCTTACACATCTTCTTATGCTCCTATCGGGGGCTGCGGTCCCACC
GCTGAGCAGCGGCGCCATCAGAACCAGTGCCACTGGCCCCGTGGAATGAA
GCAGAAGCTTTATGGTTTGTTGCCTATTTCCTCTGACGATAGAATGACAT
ATGACGGTGCTGCAGCCCTGTGCAGCCTAGGCTGCAGCTTGGCAACACGC
TCCGCCGCTGCTGACTCCCTCCTCGTCTCTACGCCGCCTTACTCTTCGCC
TTGGGCCTCTTATCTCTCAGCAGCAAATCACGTTTTAGAACTTCAAAAGC
ACACGGCCGACAAGTCATCGCAATTCTTCCTGACCCGGCACCAGCAACAC
TTCAGCCTATCGCCCGTTCATCAACACCCAACCCTTCAGCGTGAGACGAC
CAATGTACTCTCCCAGGTCTCGCCGTCTTCTCAACCACAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGAAGCAGCGGCAGCATTTCAAATATCCG
CCGCTACAGCTCCATTCCACCCCAGAATGCCTAGCGCAGTCGGTCAAGAA
GCAGTGCGTGATGGCGTCGATCGACACTTTTCCGATGAATGAATTCCCGC
TCCCCGAGCACGTGGAGGCCGAGCTCTACCCACCGATTGCACCGCTATCC
CAGACCTTCCTGCCGCTGCAAGAGATCCAAGCAGGTGTGATGGGTGTGTC
GGTGGGATTACTGCCTGGCAGATGCTCCAAGATCATGGGAAAGTACCTTC
CGAGAAGCAGCGACGAGCGACGAAAGAGAACTTATCGGGCTTAA
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Synonyms
Publications