jgi.p|Nanoce1779_2|675396, mRNA_12113 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|675396
Unique NamemRNA_12113
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2981
Alignment locationscaffold_102:1..2981 -

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Properties
Property NameValue
TranscriptId675482
TrackFilteredModels2
ProteinId675396
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_102supercontigscaffold_102:1..2981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|675396gene_12113Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|675396mRNA_12113-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_12113CDS_12113Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_12113 ID=mRNA_12113|Name=jgi.p|Nanoce1779_2|675396|organism=Nannochloropsis oceanica|type=mRNA|length=2981bp
AGCAAACCATGAAGTGCCTGGTCCCGCTCCCCACCACCCTCCTAGTCCTG
ATGGTTCTCCACTCCAGCATTATACCCTTTACCTATCGTTCTACTCCATC
TCTCTTGTGCTGTGCAGCTCATGTCATGGTCGGAGACGACAGCAGCCTGG
TTGAGGTGAAGCGCCGGTCTCTGTGGGAACTCTCCGTGGTCTGGGACAAG
CTCGGACACTTTGTGGCGCGGCTCTGGCACGGTCACCACGACGAGGACGA
GGAGTGCGAAAAGATAAGGCATCCACTATCAAAAACGATGTCCCTCTCCG
CCAACGAGACGGCGACTACCCTGGTGACACAAAACGACTCGACACCCGTT
ACAACCCACCGCCACCTACAAAAAGGGGTAGGGGAGCACAGCAAGGATAC
AGAGCTTCGGGCCTTGAAAATGGTGCAGGTCTCACGGGCCCGGGACGTGA
CTAGCCATGAGCGCTTGTGGGCGACGGTAATTGACGATGACAACATGGTG
GACGAGAGGAAGAACGACGAAGACTACGTGCACCAGCAGACCACCACAGG
CCCAAAACCCATTCTTGTGGGGGATCTCGTGGAGCATTACTCTTCTCTCA
GCGCGGTATTGCAAGACATACCCGACAATGAGGATCCGGACACCTATTCA
CTGAACATAAAGAACCCCTACCAGGAGTCGACCCTGCCTGTGTCTGATGC
GCCTTTGTACCCGAAGCCAGGAGACCACACGAGGTCGCCTTATCACCCGG
AGTCAGCAGAACACACAAGAGATATTGAGAGGGACGACGATAATGGGAAG
ATTATCTATATGACATCATTCAAGACGGTGACGGGAGACGTGCCAACAGA
ACAAGTGGAGGAGTTTTCCCAGGACGAACCCGAGAATTACGCCGACGATG
TCATTGAGACCCACTTTTCCTCGCCCCATCACCAACGCCAGCTATTTATG
CACCCTGAAGACTTTAAATTACATGCGCACAAGCATAACAACGACAAAAA
AGACGAGAAAGTGGACCCTTACTACAGCAAGGACAATGGGCTATGGCGCC
GCAAGTTCAAAGGACCCAAGACACCGCAAGGCTTTCCTCTCCCTGACAGC
ACGAGCGAAGTGCGTCACCACCACATCCACCAACACCAGCGTCAGCTGCG
AGAGCAAGCACGCGCCAACATGTCCGAGACCGAGCTAGCACAAATCCAAG
AGGAAGCGCGGGAAGAGTTGGTGCAGGCTTTGCGCTCGGCGGCGCGCGAC
GCCGAAGCGCATCGCACAGACTTGTCGGTAGGGAACAGTTTGGAATCGGT
TATGAAAGCATTGGCAGTGCGTCGCCCTCCTGTGCCGGGCTTCACAATGG
GCACTCCTATGGTGGAGACACAGCCACAGAACACCAAGGAACGTGAACAA
GTGCGCTTGCCCGGGGATGGCATGCAGCCCAAGGTGGATAACCCTCTACC
TCCCGGGCGGAAGCACCGTCGACTACGAGGCTTGCAGCAAGCAGGAGCTG
CATCTGGTACTGGCGTGGGGGCGGCTTTGGCGGGCACTTTCACGGAGGCT
CAGAAAGCGGAGTTGCGGCAAATGTTTTATGATGCAGCGCTGAGCATGAT
GCGGGAGGCGGCCCGACAGGCTCTGAATACCAACCAGGGAGGAAGTAGTG
GGGGTAGCAGCAACAGCATGTTTCCGTCGGCTAATGGGAATAATGTAGGC
AGCAACGTGGTCAATCAAGATGCCTACACAGCGGCTCTGAACGCTATGAT
CAATGCGGTCGGCTCCAAGGAAGTGAACAATGCTAACGGTGGCATTGCTT
CGCACTCCGGTGGCCCCGGCGGCAAAGTGGAAAGCAGTGGCAAAAATGGC
GGTGGCAGCGGGGCTCCCGCTAAAAAGCAAAGCCTCTTGGAAGTCGCCCG
GGAGGTTGCTCGTCACAACAGTCCCTCGGCGGGTCGTCCTCCTATAGCTG
CTGGGCGCCAACCAAATGGTCAGCGAAAGTTGCGGGGCTTAAAGACCACG
GTCCGCCTCCCTGTGCCTTATACACGTAACTCTTCATCGAATGATACCTT
GATATCCATAATCCGTAACGGGACTGATGCCATCTATGTGCCACTGCGAC
ATGTGGATCCCTCCCTCCAGGAGGAGGCCTTTGCGCGACTTGGTCCTTTG
GGTCCTATTATCCAAGGTGCAGCGGGGGCGATAGGTGGGGAGAGTGTCAA
AGAGACTGAAGATGGGAAGCGTTTCTATGGAGGGCAAGGTAGCGTCACTA
ATCCTTCGCATCCCAAGGGCCATGAGTGGGCTGAGTGGCTTTTAGTCCTG
GTCAAGAAGCACAAGGCACATCAACACTGGCAGCAGGAAGAGCGTACGAC
GCGCACCCTGACTGAGAGTGACGCAGCGGCTGCAGAAACTACAGACACTA
CCACCACATCGCCCGCGGGTCTTGTCCAAGGCGATACAACAGCAGTCACT
ACACCTACCGCGACGGCAACAACATCCAGCACTGCTAAGGTGCCGGGGGT
GGGCAATGCGGACAATCCAAATTTGGACCTGGAAGCGCTGGCGGGCCTAC
TGCAGCACCAATTTGTCCCTGCCGTGCCTGGAGGGATGGGCGATCACATA
CAGAAGCCGGAAACAGCGTCTCAAACGGATGCGCTCGGAAACGTTATCAC
GCACATGATGGGGCCCTTGGAGGTGGGGAAGAAAAAGCTGGAGAAAGGGA
AAGAGAGGGAAGGAGACAAAAGCGCAAAGGACAAGCAGGGGAAGGAAGAC
GAAGGAGAGACCGAACGCCCAGGTCTGGGGGATGCCTTTTATGATCGGGC
CTCGAGCCATCTGATGTCTCACAGCGCCCGCAACTTTCAAAAGATGCAGG
AAGCGGTTGGCAGCATCATGGCCCAGGAGGGGATTATGACATGGGAGGAC
GGGATGGAAGGCTTTGGGGAATAAATTTGAAGGGAGAGAAGAAGAAAAGT
AGGATAGAAGAGACGGAGAGGAATGAAAGCC
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protein sequence of jgi.p|Nanoce1779_2|675396

>mRNA_12113-protein ID=mRNA_12113-protein|Name=jgi.p|Nanoce1779_2|675396|organism=Nannochloropsis oceanica|type=polypeptide|length=972bp
MKCLVPLPTTLLVLMVLHSSIIPFTYRSTPSLLCCAAHVMVGDDSSLVEV
KRRSLWELSVVWDKLGHFVARLWHGHHDEDEECEKIRHPLSKTMSLSANE
TATTLVTQNDSTPVTTHRHLQKGVGEHSKDTELRALKMVQVSRARDVTSH
ERLWATVIDDDNMVDERKNDEDYVHQQTTTGPKPILVGDLVEHYSSLSAV
LQDIPDNEDPDTYSLNIKNPYQESTLPVSDAPLYPKPGDHTRSPYHPESA
EHTRDIERDDDNGKIIYMTSFKTVTGDVPTEQVEEFSQDEPENYADDVIE
THFSSPHHQRQLFMHPEDFKLHAHKHNNDKKDEKVDPYYSKDNGLWRRKF
KGPKTPQGFPLPDSTSEVRHHHIHQHQRQLREQARANMSETELAQIQEEA
REELVQALRSAARDAEAHRTDLSVGNSLESVMKALAVRRPPVPGFTMGTP
MVETQPQNTKEREQVRLPGDGMQPKVDNPLPPGRKHRRLRGLQQAGAASG
TGVGAALAGTFTEAQKAELRQMFYDAALSMMREAARQALNTNQGGSSGGS
SNSMFPSANGNNVGSNVVNQDAYTAALNAMINAVGSKEVNNANGGIASHS
GGPGGKVESSGKNGGGSGAPAKKQSLLEVAREVARHNSPSAGRPPIAAGR
QPNGQRKLRGLKTTVRLPVPYTRNSSSNDTLISIIRNGTDAIYVPLRHVD
PSLQEEAFARLGPLGPIIQGAAGAIGGESVKETEDGKRFYGGQGSVTNPS
HPKGHEWAEWLLVLVKKHKAHQHWQQEERTTRTLTESDAAAAETTDTTTT
SPAGLVQGDTTAVTTPTATATTSSTAKVPGVGNADNPNLDLEALAGLLQH
QFVPAVPGGMGDHIQKPETASQTDALGNVITHMMGPLEVGKKKLEKGKER
EGDKSAKDKQGKEDEGETERPGLGDAFYDRASSHLMSHSARNFQKMQEAV
GSIMAQEGIMTWEDGMEGFGE*
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mRNA from alignment at scaffold_102:1..2981-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12113 ID=mRNA_12113|Name=jgi.p|Nanoce1779_2|675396|organism=Nannochloropsis oceanica|type=mRNA|length=2981bp|location=Sequence derived from alignment at scaffold_102:1..2981- (Nannochloropsis oceanica)
AGCAAACCATGAAGTGCCTGGTCCCGCTCCCCACCACCCTCCTAGTCCTG ATGGTTCTCCACTCCAGCATTATACCCTTTACCTATCGTTCTACTCCATC TCTCTTGTGCTGTGCAGCTCATGTCATGGTCGGAGACGACAGCAGCCTGG TTGAGGTGAAGCGCCGGTCTCTGTGGGAACTCTCCGTGGTCTGGGACAAG CTCGGACACTTTGTGGCGCGGCTCTGGCACGGTCACCACGACGAGGACGA GGAGTGCGAAAAGATAAGGCATCCACTATCAAAAACGATGTCCCTCTCCG CCAACGAGACGGCGACTACCCTGGTGACACAAAACGACTCGACACCCGTT ACAACCCACCGCCACCTACAAAAAGGGGTAGGGGAGCACAGCAAGGATAC AGAGCTTCGGGCCTTGAAAATGGTGCAGGTCTCACGGGCCCGGGACGTGA CTAGCCATGAGCGCTTGTGGGCGACGGTAATTGACGATGACAACATGGTG GACGAGAGGAAGAACGACGAAGACTACGTGCACCAGCAGACCACCACAGG CCCAAAACCCATTCTTGTGGGGGATCTCGTGGAGCATTACTCTTCTCTCA GCGCGGTATTGCAAGACATACCCGACAATGAGGATCCGGACACCTATTCA CTGAACATAAAGAACCCCTACCAGGAGTCGACCCTGCCTGTGTCTGATGC GCCTTTGTACCCGAAGCCAGGAGACCACACGAGGTCGCCTTATCACCCGG AGTCAGCAGAACACACAAGAGATATTGAGAGGGACGACGATAATGGGAAG ATTATCTATATGACATCATTCAAGACGGTGACGGGAGACGTGCCAACAGA ACAAGTGGAGGAGTTTTCCCAGGACGAACCCGAGAATTACGCCGACGATG TCATTGAGACCCACTTTTCCTCGCCCCATCACCAACGCCAGCTATTTATG CACCCTGAAGACTTTAAATTACATGCGCACAAGCATAACAACGACAAAAA AGACGAGAAAGTGGACCCTTACTACAGCAAGGACAATGGGCTATGGCGCC GCAAGTTCAAAGGACCCAAGACACCGCAAGGCTTTCCTCTCCCTGACAGC ACGAGCGAAGTGCGTCACCACCACATCCACCAACACCAGCGTCAGCTGCG AGAGCAAGCACGCGCCAACATGTCCGAGACCGAGCTAGCACAAATCCAAG AGGAAGCGCGGGAAGAGTTGGTGCAGGCTTTGCGCTCGGCGGCGCGCGAC GCCGAAGCGCATCGCACAGACTTGTCGGTAGGGAACAGTTTGGAATCGGT TATGAAAGCATTGGCAGTGCGTCGCCCTCCTGTGCCGGGCTTCACAATGG GCACTCCTATGGTGGAGACACAGCCACAGAACACCAAGGAACGTGAACAA GTGCGCTTGCCCGGGGATGGCATGCAGCCCAAGGTGGATAACCCTCTACC TCCCGGGCGGAAGCACCGTCGACTACGAGGCTTGCAGCAAGCAGGAGCTG CATCTGGTACTGGCGTGGGGGCGGCTTTGGCGGGCACTTTCACGGAGGCT CAGAAAGCGGAGTTGCGGCAAATGTTTTATGATGCAGCGCTGAGCATGAT GCGGGAGGCGGCCCGACAGGCTCTGAATACCAACCAGGGAGGAAGTAGTG GGGGTAGCAGCAACAGCATGTTTCCGTCGGCTAATGGGAATAATGTAGGC AGCAACGTGGTCAATCAAGATGCCTACACAGCGGCTCTGAACGCTATGAT CAATGCGGTCGGCTCCAAGGAAGTGAACAATGCTAACGGTGGCATTGCTT CGCACTCCGGTGGCCCCGGCGGCAAAGTGGAAAGCAGTGGCAAAAATGGC GGTGGCAGCGGGGCTCCCGCTAAAAAGCAAAGCCTCTTGGAAGTCGCCCG GGAGGTTGCTCGTCACAACAGTCCCTCGGCGGGTCGTCCTCCTATAGCTG CTGGGCGCCAACCAAATGGTCAGCGAAAGTTGCGGGGCTTAAAGACCACG GTCCGCCTCCCTGTGCCTTATACACGTAACTCTTCATCGAATGATACCTT GATATCCATAATCCGTAACGGGACTGATGCCATCTATGTGCCACTGCGAC ATGTGGATCCCTCCCTCCAGGAGGAGGCCTTTGCGCGACTTGGTCCTTTG GGTCCTATTATCCAAGGTGCAGCGGGGGCGATAGGTGGGGAGAGTGTCAA AGAGACTGAAGATGGGAAGCGTTTCTATGGAGGGCAAGGTAGCGTCACTA ATCCTTCGCATCCCAAGGGCCATGAGTGGGCTGAGTGGCTTTTAGTCCTG GTCAAGAAGCACAAGGCACATCAACACTGGCAGCAGGAAGAGCGTACGAC GCGCACCCTGACTGAGAGTGACGCAGCGGCTGCAGAAACTACAGACACTA CCACCACATCGCCCGCGGGTCTTGTCCAAGGCGATACAACAGCAGTCACT ACACCTACCGCGACGGCAACAACATCCAGCACTGCTAAGGTGCCGGGGGT GGGCAATGCGGACAATCCAAATTTGGACCTGGAAGCGCTGGCGGGCCTAC TGCAGCACCAATTTGTCCCTGCCGTGCCTGGAGGGATGGGCGATCACATA CAGAAGCCGGAAACAGCGTCTCAAACGGATGCGCTCGGAAACGTTATCAC GCACATGATGGGGCCCTTGGAGGTGGGGAAGAAAAAGCTGGAGAAAGGGA AAGAGAGGGAAGGAGACAAAAGCGCAAAGGACAAGCAGGGGAAGGAAGAC GAAGGAGAGACCGAACGCCCAGGTCTGGGGGATGCCTTTTATGATCGGGC CTCGAGCCATCTGATGTCTCACAGCGCCCGCAACTTTCAAAAGATGCAGG AAGCGGTTGGCAGCATCATGGCCCAGGAGGGGATTATGACATGGGAGGAC GGGATGGAAGGCTTTGGGGAATAAATTTGAAGGGAGAGAAGAAGAAAAGT AGGATAGAAGAGACGGAGAGGAATGAAAGCC
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Coding sequence (CDS) from alignment at scaffold_102:1..2981-

>mRNA_12113 ID=mRNA_12113|Name=jgi.p|Nanoce1779_2|675396|organism=Nannochloropsis oceanica|type=CDS|length=2916bp|location=Sequence derived from alignment at scaffold_102:1..2981- (Nannochloropsis oceanica)
ATGAAGTGCCTGGTCCCGCTCCCCACCACCCTCCTAGTCCTGATGGTTCT
CCACTCCAGCATTATACCCTTTACCTATCGTTCTACTCCATCTCTCTTGT
GCTGTGCAGCTCATGTCATGGTCGGAGACGACAGCAGCCTGGTTGAGGTG
AAGCGCCGGTCTCTGTGGGAACTCTCCGTGGTCTGGGACAAGCTCGGACA
CTTTGTGGCGCGGCTCTGGCACGGTCACCACGACGAGGACGAGGAGTGCG
AAAAGATAAGGCATCCACTATCAAAAACGATGTCCCTCTCCGCCAACGAG
ACGGCGACTACCCTGGTGACACAAAACGACTCGACACCCGTTACAACCCA
CCGCCACCTACAAAAAGGGGTAGGGGAGCACAGCAAGGATACAGAGCTTC
GGGCCTTGAAAATGGTGCAGGTCTCACGGGCCCGGGACGTGACTAGCCAT
GAGCGCTTGTGGGCGACGGTAATTGACGATGACAACATGGTGGACGAGAG
GAAGAACGACGAAGACTACGTGCACCAGCAGACCACCACAGGCCCAAAAC
CCATTCTTGTGGGGGATCTCGTGGAGCATTACTCTTCTCTCAGCGCGGTA
TTGCAAGACATACCCGACAATGAGGATCCGGACACCTATTCACTGAACAT
AAAGAACCCCTACCAGGAGTCGACCCTGCCTGTGTCTGATGCGCCTTTGT
ACCCGAAGCCAGGAGACCACACGAGGTCGCCTTATCACCCGGAGTCAGCA
GAACACACAAGAGATATTGAGAGGGACGACGATAATGGGAAGATTATCTA
TATGACATCATTCAAGACGGTGACGGGAGACGTGCCAACAGAACAAGTGG
AGGAGTTTTCCCAGGACGAACCCGAGAATTACGCCGACGATGTCATTGAG
ACCCACTTTTCCTCGCCCCATCACCAACGCCAGCTATTTATGCACCCTGA
AGACTTTAAATTACATGCGCACAAGCATAACAACGACAAAAAAGACGAGA
AAGTGGACCCTTACTACAGCAAGGACAATGGGCTATGGCGCCGCAAGTTC
AAAGGACCCAAGACACCGCAAGGCTTTCCTCTCCCTGACAGCACGAGCGA
AGTGCGTCACCACCACATCCACCAACACCAGCGTCAGCTGCGAGAGCAAG
CACGCGCCAACATGTCCGAGACCGAGCTAGCACAAATCCAAGAGGAAGCG
CGGGAAGAGTTGGTGCAGGCTTTGCGCTCGGCGGCGCGCGACGCCGAAGC
GCATCGCACAGACTTGTCGGTAGGGAACAGTTTGGAATCGGTTATGAAAG
CATTGGCAGTGCGTCGCCCTCCTGTGCCGGGCTTCACAATGGGCACTCCT
ATGGTGGAGACACAGCCACAGAACACCAAGGAACGTGAACAAGTGCGCTT
GCCCGGGGATGGCATGCAGCCCAAGGTGGATAACCCTCTACCTCCCGGGC
GGAAGCACCGTCGACTACGAGGCTTGCAGCAAGCAGGAGCTGCATCTGGT
ACTGGCGTGGGGGCGGCTTTGGCGGGCACTTTCACGGAGGCTCAGAAAGC
GGAGTTGCGGCAAATGTTTTATGATGCAGCGCTGAGCATGATGCGGGAGG
CGGCCCGACAGGCTCTGAATACCAACCAGGGAGGAAGTAGTGGGGGTAGC
AGCAACAGCATGTTTCCGTCGGCTAATGGGAATAATGTAGGCAGCAACGT
GGTCAATCAAGATGCCTACACAGCGGCTCTGAACGCTATGATCAATGCGG
TCGGCTCCAAGGAAGTGAACAATGCTAACGGTGGCATTGCTTCGCACTCC
GGTGGCCCCGGCGGCAAAGTGGAAAGCAGTGGCAAAAATGGCGGTGGCAG
CGGGGCTCCCGCTAAAAAGCAAAGCCTCTTGGAAGTCGCCCGGGAGGTTG
CTCGTCACAACAGTCCCTCGGCGGGTCGTCCTCCTATAGCTGCTGGGCGC
CAACCAAATGGTCAGCGAAAGTTGCGGGGCTTAAAGACCACGGTCCGCCT
CCCTGTGCCTTATACACGTAACTCTTCATCGAATGATACCTTGATATCCA
TAATCCGTAACGGGACTGATGCCATCTATGTGCCACTGCGACATGTGGAT
CCCTCCCTCCAGGAGGAGGCCTTTGCGCGACTTGGTCCTTTGGGTCCTAT
TATCCAAGGTGCAGCGGGGGCGATAGGTGGGGAGAGTGTCAAAGAGACTG
AAGATGGGAAGCGTTTCTATGGAGGGCAAGGTAGCGTCACTAATCCTTCG
CATCCCAAGGGCCATGAGTGGGCTGAGTGGCTTTTAGTCCTGGTCAAGAA
GCACAAGGCACATCAACACTGGCAGCAGGAAGAGCGTACGACGCGCACCC
TGACTGAGAGTGACGCAGCGGCTGCAGAAACTACAGACACTACCACCACA
TCGCCCGCGGGTCTTGTCCAAGGCGATACAACAGCAGTCACTACACCTAC
CGCGACGGCAACAACATCCAGCACTGCTAAGGTGCCGGGGGTGGGCAATG
CGGACAATCCAAATTTGGACCTGGAAGCGCTGGCGGGCCTACTGCAGCAC
CAATTTGTCCCTGCCGTGCCTGGAGGGATGGGCGATCACATACAGAAGCC
GGAAACAGCGTCTCAAACGGATGCGCTCGGAAACGTTATCACGCACATGA
TGGGGCCCTTGGAGGTGGGGAAGAAAAAGCTGGAGAAAGGGAAAGAGAGG
GAAGGAGACAAAAGCGCAAAGGACAAGCAGGGGAAGGAAGACGAAGGAGA
GACCGAACGCCCAGGTCTGGGGGATGCCTTTTATGATCGGGCCTCGAGCC
ATCTGATGTCTCACAGCGCCCGCAACTTTCAAAAGATGCAGGAAGCGGTT
GGCAGCATCATGGCCCAGGAGGGGATTATGACATGGGAGGACGGGATGGA
AGGCTTTGGGGAATAA
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Synonyms
Publications