NO21G01900, NO21G01900 (gene) Nannochloropsis oceanica

Overview
NameNO21G01900
Unique NameNO21G01900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1725
Alignment locationchr21:564997..566721 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:564997..566721 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016746transferase activity, transferring acyl groups
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR002123Plipid/glycerol_acylTrfase
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO21G01900 vs. NCBI_GenBank
Match: EWM22682.1 (hypothetical protein Naga_100218g1 [Nannochloropsis gaditana])

HSP 1 Score: 166.8 bits (421), Expect = 1.500e-37
Identity = 88/139 (63.31%), Postives = 104/139 (74.82%), Query Frame = 0 
Query:    1 MSSASVPAISMPEGDIPVAAASSSKDDESLSTIPPAKPQSYMQQALGLFRASCVFGILLGATATNVTVAMLIHAVTRDRKKAQGRCVYSICMITSWALKFIPWITIKMKLPPQPIDFEQFLLTSNHISFMDLFFIQHTM 140
            M+SAS P      G+  +  +    +D +L+    +KP S++ QAL LFRAS    +LL AT  NV  A+LIHA TRD KKAQGR VY+ICMITSWALKFIPWITIK+KLPPQPIDFEQF+LTSNHISFMDLFFIQHT+
Sbjct:    1 MASASSPRAPTLGGEQGI-GSEPPVEDNTLAKAASSKPPSFLGQALSLFRASYAVSVLLSATTVNVAAALLIHAFTRDTKKAQGRSVYAICMITSWALKFIPWITIKVKLPPQPIDFEQFILTSNHISFMDLFFIQHTI 138
[Close]
BLAST of NO21G01900 vs. NCBI_GenBank
Match: EWM22692.1 (hypothetical protein Naga_102225g1 [Nannochloropsis gaditana])

HSP 1 Score: 117.5 bits (293), Expect = 1.100e-22
Identity = 72/166 (43.37%), Postives = 81/166 (48.80%), Query Frame = 0 
Query:  281 MFKMHQQYKIPVVLIRLRGSLSRYPSTPPSFLPSLSSLRFSLLVHPELQPTHPSFHSSLHSSGVEKIWAAEGLPTGTGVVECTMLPHAYMWPTAEAYEEGLRAVYERGEDGP-----PPSPLASSPPVTGAMANVVGMLEREAVRVLEGGRKGE-REGDLAITPVE 441
            MFKM QQY +PVVLIRLR                                            GVEKIWAAEG+P+GTG+VEC MLPHAY WP+ +AYEEGLRAVYERGED P                        GMLE+EA RVLEG  +G   EG   + P E
Sbjct:    1 MFKMQQQYNLPVVLIRLR--------------------------------------------GVEKIWAAEGIPSGTGLVECQMLPHAYRWPSLQAYEEGLRAVYERGEDDPLXXXXXXXXXXXXXXXXXXXXXXXGMLEKEAARVLEGEEEGRGGEGGAVVAPTE 122
The following BLAST results are available for this feature:
BLAST of NO21G01900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Position :
0
Zoom :
x 1
2004006008001000120014001600SequenceEWM22682.1EWM22692.1
Match NameE-valueIdentityDescription
EWM22682.11.500e-3763.31hypothetical protein Naga_100218g1 [Nannochloropsi... [more]
EWM22692.11.100e-2243.37hypothetical protein Naga_102225g1 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL026nonsL026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004589NSK004589Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01900.1NO21G01900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO21G01900.2NO21G01900.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO21G01900.3NO21G01900.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602668gene_8156Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_102225g1gene7749Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01900.1NO21G01900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO21G01900.2NO21G01900.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO21G01900.3NO21G01900.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01900 ID=NO21G01900|Name=NO21G01900|organism=Nannochloropsis oceanica|type=gene|length=1725bp
AACACAGCCACTGTGGCAGCAGTCAGCATGTCTTCCGCCTCTGTGCCAGC
CATATCTATGCCGGAAGGCGACATTCCGGTAGCAGCGGCCTCGTCTTCCA
AGGATGACGAGTCCTTGTCCACCATACCCCCAGCTAAGCCGCAATCCTAC
ATGCAACAAGCTTTGGGTCTCTTCCGCGCCTCCTGTGTCTTTGGTATCCT
CTTAGGAGCCACAGCTACAAACGTCACGGTTGCTATGCTCATCCACGCCG
TGACCCGGGATAGGAAAAAGGCGCAAGgtatgttggaagtggggctagga
ttttgccatctttcccccttttccccttttccccacagctctcatctttt
cctggtcccctctgacagttgtacgcatatttctacatacatgcatatct
cctggcagGTCGATGCGTGTACAGCATATGCATGATCACCAGCTGGGCTC
TCAAATTTATTCCCTGGATCACCATTAAAATGAAATTGCCCCCGCAACCC
ATCGACTTCGAGCAATTCCTGCTCACGTCCAACCACATCTCCTTTATGGA
TCTGTTCTTCATCCAGGTAAGATTCTCACAAGCCATTCCATCTTCCCTCC
TCCTAACGTACCGCTAATTTTTCCACCCTTCCTCCTTCCCTTCCTCCCTA
CCAGCATACCATGTACCATTCGCTTTCCCGACAAGCGATTCAGCGCGTCC
GTCTCATTTACTGGGAGAAACTCGCCTCTATCCCTCTTGTCAAAGGTATC
TTCACCCTGACTGGTGGTGTGCCGATTAAGATTTTAGGGAGCACGTCGCT
GAAGGAGGGGGACAACAAGTATTGCAAAGATGTACGTCAGTCTGTCGGTT
GCCGCCCTCTCCCCTTCTCCTCCTCCCTTCTCTCCCCTTGTCGGCCTATT
TCTCTTTTTCCATGGTTCAAAATTTCTCATCCCCTCTTTGTCACTTCCTG
CCTCCCTGGGCAGAGCGTCAAGGCCGTCTACGGCGCCGTCGACAAGGCAA
TCGTGGAAGACAAGCTCTCCATCGCCCTGTCGTTCGAGGGGCGGCGCAAC
CCCAACCCGCCTACCCTCAGCAAGATCCAACGGGGCATGTTCAAAATGCA
CCAGCAATACAAGATTCCTGTCGTGCTTATCCGTCTTCGAGGTTCGTTAT
CCCGTTACCCCTCCACCCCGCCTTCCTTCCTTCCTTCCCTCTCTTCCCTC
CGCTTCTCACTGTTAGTCCATCCTGAGCTGCAACCCACTCATCCTTCCTT
CCATTCCTCCCTCCATTCCTCAGGCGTAGAGAAAATCTGGGCTGCTGAGG
GTCTACCAACAGGAACAGGTGTGGTGGAGTGCACCATGCTGCCTCACGCG
TACATGTGGCCGACGGCCGAGGCTTACGAGGAGGGGTTACGCGCCGTGTA
CGAACGAGGAGAAGACGGTCCGCCGCCCTCGCCCCTTGCCTCCTCCCCCC
CCGTTACAGGCGCCATGGCAAATGTGGTGGGAATGTTGGAGAGGGAGGCG
GTTCGGGTGCTTGAGGGAGGGAGAAAGGGAGAGAGGGAGGGCGATCTGGC
GATTACGCCGGTTGAGTAGGGCTGGAACGAGGGAAGGGACGGAGGCAGGG
AAGCAAAGAGAAAAGGCGATTAATTCAAACTTTAGGTCAAAATTTTGTAC
AAGAGGGGGGGGGACGAGATAACATGCATTTACAAGAGCGAAAAGAAATA
TTGAAGGAAGTACCCATTATGACGG
back to top

protein sequence of NO21G01900.1

>NO21G01900.1-protein ID=NO21G01900.1-protein|Name=NO21G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MSSASVPAISMPEGDIPVAAASSSKDDESLSTIPPAKPQSYMQQALGLFR
ASCVFGILLGATATNVTVAMLIHAVTRDRKKAQGRCVYSICMITSWALKF
IPWITIKMKLPPQPIDFEQFLLTSNHISFMDLFFIQHTMYHSLSRQAIQR
VRLIYWEKLASIPLVKGIFTLTGGVPIKILGSTSLKEGDNKYCKDSVKAV
YGAVDKAIVEDKLSIALSFEGRRNPNPPTLSKIQRGMFKMHQQYKIPVVL
IRLRGVEKIWAAEGLPTGTGVVECTMLPHAYMWPTAEAYEEGLRAVYERG
EDGPPPSPLASSPPVTGAMANVVGMLEREAVRVLEGGRKGEREGDLAITP
VE*
back to top

protein sequence of NO21G01900.2

>NO21G01900.2-protein ID=NO21G01900.2-protein|Name=NO21G01900.2|organism=Nannochloropsis oceanica|type=polypeptide|length=441bp
MSSASVPAISMPEGDIPVAAASSSKDDESLSTIPPAKPQSYMQQALGLFR
ASCVFGILLGATATNVTVAMLIHAVTRDRKKAQGRCVYSICMITSWALKF
IPWITIKMKLPPQPIDFEQFLLTSNHISFMDLFFIQHTMYHSLSRQAIQR
VRLIYWEKLASIPLVKGIFTLTGGVPIKILGSTSLKEGDNKYCKDVRQSV
GCRPLPFSSSLLSPCRPISLFPWFKISHPLFVTSCLPGQSVKAVYGAVDK
AIVEDKLSIALSFEGRRNPNPPTLSKIQRGMFKMHQQYKIPVVLIRLRGS
LSRYPSTPPSFLPSLSSLRFSLLVHPELQPTHPSFHSSLHSSGVEKIWAA
EGLPTGTGVVECTMLPHAYMWPTAEAYEEGLRAVYERGEDGPPPSPLASS
PPVTGAMANVVGMLEREAVRVLEGGRKGEREGDLAITPVE*
back to top

protein sequence of NO21G01900.3

>NO21G01900.3-protein ID=NO21G01900.3-protein|Name=NO21G01900.3|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MYHSLSRQAIQRVRLIYWEKLASIPLVKGIFTLTGGVPIKILGSTSLKEG
DNKYCKDVRQSVGCRPLPFSSSLLSPCRPISLFPWFKISHPLFVTSCLPG
QSVKAVYGAVDKAIVEDKLSIALSFEGRRNPNPPTLSKIQRGMFKMHQQY
KIPVVLIRLRGSLSRYPSTPPSFLPSLSSLRFSLLVHPELQPTHPSFHSS
LHSSGVEKIWAAEGLPTGTGVVECTMLPHAYMWPTAEAYEEGLRAVYERG
EDGPPPSPLASSPPVTGAMANVVGMLEREAVRVLEGGRKGEREGDLAITP
VE*
back to top
Synonyms
Publications