NO21G01900.1, NO21G01900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01900.1
Unique NameNO21G01900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1242
Alignment locationchr21:564997..566721 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:564997..566721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01900.1 vs.
Match: EWM22682.1 (hypothetical protein Naga_100218g1 [Nannochloropsis gaditana])

HSP 1 Score: 166.8 bits (421), Expect = 1.200e-37
Identity = 88/139 (63.31%), Postives = 104/139 (74.82%), Query Frame = 0 
Query:    1 MSSASVPAISMPEGDIPVAAASSSKDDESLSTIPPAKPQSYMQQALGLFRASCVFGILLGATATNVTVAMLIHAVTRDRKKAQGRCVYSICMITSWALKFIPWITIKMKLPPQPIDFEQFLLTSNHISFMDLFFIQHTM 140
            M+SAS P      G+  + +     +D +L+    +KP S++ QAL LFRAS    +LL AT  NV  A+LIHA TRD KKAQGR VY+ICMITSWALKFIPWITIK+KLPPQPIDFEQF+LTSNHISFMDLFFIQHT+
Sbjct:    1 MASASSPRAPTLGGEQGIGS-EPPVEDNTLAKAASSKPPSFLGQALSLFRASYAVSVLLSATTVNVAAALLIHAFTRDTKKAQGRSVYAICMITSWALKFIPWITIKVKLPPQPIDFEQFILTSNHISFMDLFFIQHTI 138
The following BLAST results are available for this feature:
BLAST of NO21G01900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
100200300400500600700800900100011001200SequenceEWM22682.1
Match NameE-valueIdentityDescription
EWM22682.11.200e-3763.31hypothetical protein Naga_100218g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01900NO21G01900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01900.1NO21G01900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01900.1.cds1NO21G01900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01900.1.cds2NO21G01900.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01900.1.cds3NO21G01900.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01900.1.cds4NO21G01900.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01900.1.cds5NO21G01900.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01900.1 ID=NO21G01900.1|Name=NO21G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1242bp
AACACAGCCACTGTGGCAGCAGTCAGCATGTCTTCCGCCTCTGTGCCAGC
CATATCTATGCCGGAAGGCGACATTCCGGTAGCAGCGGCCTCGTCTTCCA
AGGATGACGAGTCCTTGTCCACCATACCCCCAGCTAAGCCGCAATCCTAC
ATGCAACAAGCTTTGGGTCTCTTCCGCGCCTCCTGTGTCTTTGGTATCCT
CTTAGGAGCCACAGCTACAAACGTCACGGTTGCTATGCTCATCCACGCCG
TGACCCGGGATAGGAAAAAGGCGCAAGGTCGATGCGTGTACAGCATATGC
ATGATCACCAGCTGGGCTCTCAAATTTATTCCCTGGATCACCATTAAAAT
GAAATTGCCCCCGCAACCCATCGACTTCGAGCAATTCCTGCTCACGTCCA
ACCACATCTCCTTTATGGATCTGTTCTTCATCCAGCATACCATGTACCAT
TCGCTTTCCCGACAAGCGATTCAGCGCGTCCGTCTCATTTACTGGGAGAA
ACTCGCCTCTATCCCTCTTGTCAAAGGTATCTTCACCCTGACTGGTGGTG
TGCCGATTAAGATTTTAGGGAGCACGTCGCTGAAGGAGGGGGACAACAAG
TATTGCAAAGATAGCGTCAAGGCCGTCTACGGCGCCGTCGACAAGGCAAT
CGTGGAAGACAAGCTCTCCATCGCCCTGTCGTTCGAGGGGCGGCGCAACC
CCAACCCGCCTACCCTCAGCAAGATCCAACGGGGCATGTTCAAAATGCAC
CAGCAATACAAGATTCCTGTCGTGCTTATCCGTCTTCGAGGCGTAGAGAA
AATCTGGGCTGCTGAGGGTCTACCAACAGGAACAGGTGTGGTGGAGTGCA
CCATGCTGCCTCACGCGTACATGTGGCCGACGGCCGAGGCTTACGAGGAG
GGGTTACGCGCCGTGTACGAACGAGGAGAAGACGGTCCGCCGCCCTCGCC
CCTTGCCTCCTCCCCCCCCGTTACAGGCGCCATGGCAAATGTGGTGGGAA
TGTTGGAGAGGGAGGCGGTTCGGGTGCTTGAGGGAGGGAGAAAGGGAGAG
AGGGAGGGCGATCTGGCGATTACGCCGGTTGAGTAGGGCTGGAACGAGGG
AAGGGACGGAGGCAGGGAAGCAAAGAGAAAAGGCGATTAATTCAAACTTT
AGGTCAAAATTTTGTACAAGAGGGGGGGGGACGAGATAACATGCATTTAC
AAGAGCGAAAAGAAATATTGAAGGAAGTACCCATTATGACGG
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protein sequence of NO21G01900.1

>NO21G01900.1-protein ID=NO21G01900.1-protein|Name=NO21G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MSSASVPAISMPEGDIPVAAASSSKDDESLSTIPPAKPQSYMQQALGLFR
ASCVFGILLGATATNVTVAMLIHAVTRDRKKAQGRCVYSICMITSWALKF
IPWITIKMKLPPQPIDFEQFLLTSNHISFMDLFFIQHTMYHSLSRQAIQR
VRLIYWEKLASIPLVKGIFTLTGGVPIKILGSTSLKEGDNKYCKDSVKAV
YGAVDKAIVEDKLSIALSFEGRRNPNPPTLSKIQRGMFKMHQQYKIPVVL
IRLRGVEKIWAAEGLPTGTGVVECTMLPHAYMWPTAEAYEEGLRAVYERG
EDGPPPSPLASSPPVTGAMANVVGMLEREAVRVLEGGRKGEREGDLAITP
VE*
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mRNA from alignment at chr21:564997..566721+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01900.1 ID=NO21G01900.1|Name=NO21G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1725bp|location=Sequence derived from alignment at chr21:564997..566721+ (Nannochloropsis oceanica)
AACACAGCCACTGTGGCAGCAGTCAGCATGTCTTCCGCCTCTGTGCCAGC
CATATCTATGCCGGAAGGCGACATTCCGGTAGCAGCGGCCTCGTCTTCCA
AGGATGACGAGTCCTTGTCCACCATACCCCCAGCTAAGCCGCAATCCTAC
ATGCAACAAGCTTTGGGTCTCTTCCGCGCCTCCTGTGTCTTTGGTATCCT
CTTAGGAGCCACAGCTACAAACGTCACGGTTGCTATGCTCATCCACGCCG
TGACCCGGGATAGGAAAAAGGCGCAAGGTATGTTGGAAGTGGGGCTAGGA
TTTTGCCATCTTTCCCCCTTTTCCCCTTTTCCCCACAGCTCTCATCTTTT
CCTGGTCCCCTCTGACAGTTGTACGCATATTTCTACATACATGCATATCT
CCTGGCAGGTCGATGCGTGTACAGCATATGCATGATCACCAGCTGGGCTC
TCAAATTTATTCCCTGGATCACCATTAAAATGAAATTGCCCCCGCAACCC
ATCGACTTCGAGCAATTCCTGCTCACGTCCAACCACATCTCCTTTATGGA
TCTGTTCTTCATCCAGGTAAGATTCTCACAAGCCATTCCATCTTCCCTCC
TCCTAACGTACCGCTAATTTTTCCACCCTTCCTCCTTCCCTTCCTCCCTA
CCAGCATACCATGTACCATTCGCTTTCCCGACAAGCGATTCAGCGCGTCC
GTCTCATTTACTGGGAGAAACTCGCCTCTATCCCTCTTGTCAAAGGTATC
TTCACCCTGACTGGTGGTGTGCCGATTAAGATTTTAGGGAGCACGTCGCT
GAAGGAGGGGGACAACAAGTATTGCAAAGATGTACGTCAGTCTGTCGGTT
GCCGCCCTCTCCCCTTCTCCTCCTCCCTTCTCTCCCCTTGTCGGCCTATT
TCTCTTTTTCCATGGTTCAAAATTTCTCATCCCCTCTTTGTCACTTCCTG
CCTCCCTGGGCAGAGCGTCAAGGCCGTCTACGGCGCCGTCGACAAGGCAA
TCGTGGAAGACAAGCTCTCCATCGCCCTGTCGTTCGAGGGGCGGCGCAAC
CCCAACCCGCCTACCCTCAGCAAGATCCAACGGGGCATGTTCAAAATGCA
CCAGCAATACAAGATTCCTGTCGTGCTTATCCGTCTTCGAGGTTCGTTAT
CCCGTTACCCCTCCACCCCGCCTTCCTTCCTTCCTTCCCTCTCTTCCCTC
CGCTTCTCACTGTTAGTCCATCCTGAGCTGCAACCCACTCATCCTTCCTT
CCATTCCTCCCTCCATTCCTCAGGCGTAGAGAAAATCTGGGCTGCTGAGG
GTCTACCAACAGGAACAGGTGTGGTGGAGTGCACCATGCTGCCTCACGCG
TACATGTGGCCGACGGCCGAGGCTTACGAGGAGGGGTTACGCGCCGTGTA
CGAACGAGGAGAAGACGGTCCGCCGCCCTCGCCCCTTGCCTCCTCCCCCC
CCGTTACAGGCGCCATGGCAAATGTGGTGGGAATGTTGGAGAGGGAGGCG
GTTCGGGTGCTTGAGGGAGGGAGAAAGGGAGAGAGGGAGGGCGATCTGGC
GATTACGCCGGTTGAGTAGGGCTGGAACGAGGGAAGGGACGGAGGCAGGG
AAGCAAAGAGAAAAGGCGATTAATTCAAACTTTAGGTCAAAATTTTGTAC
AAGAGGGGGGGGGACGAGATAACATGCATTTACAAGAGCGAAAAGAAATA
TTGAAGGAAGTACCCATTATGACGG
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Coding sequence (CDS) from alignment at chr21:564997..566721+

>NO21G01900.1 ID=NO21G01900.1|Name=NO21G01900.1|organism=Nannochloropsis oceanica|type=CDS|length=1059bp|location=Sequence derived from alignment at chr21:564997..566721+ (Nannochloropsis oceanica)
ATGTCTTCCGCCTCTGTGCCAGCCATATCTATGCCGGAAGGCGACATTCC
GGTAGCAGCGGCCTCGTCTTCCAAGGATGACGAGTCCTTGTCCACCATAC
CCCCAGCTAAGCCGCAATCCTACATGCAACAAGCTTTGGGTCTCTTCCGC
GCCTCCTGTGTCTTTGGTATCCTCTTAGGAGCCACAGCTACAAACGTCAC
GGTTGCTATGCTCATCCACGCCGTGACCCGGGATAGGAAAAAGGCGCAAG
GTCGATGCGTGTACAGCATATGCATGATCACCAGCTGGGCTCTCAAATTT
ATTCCCTGGATCACCATTAAAATGAAATTGCCCCCGCAACCCATCGACTT
CGAGCAATTCCTGCTCACGTCCAACCACATCTCCTTTATGGATCTGTTCT
TCATCCAGCATACCATGTACCATTCGCTTTCCCGACAAGCGATTCAGCGC
GTCCGTCTCATTTACTGGGAGAAACTCGCCTCTATCCCTCTTGTCAAAGG
TATCTTCACCCTGACTGGTGGTGTGCCGATTAAGATTTTAGGGAGCACGT
CGCTGAAGGAGGGGGACAACAAGTATTGCAAAGATAGCGTCAAGGCCGTC
TACGGCGCCGTCGACAAGGCAATCGTGGAAGACAAGCTCTCCATCGCCCT
GTCGTTCGAGGGGCGGCGCAACCCCAACCCGCCTACCCTCAGCAAGATCC
AACGGGGCATGTTCAAAATGCACCAGCAATACAAGATTCCTGTCGTGCTT
ATCCGTCTTCGAGGCGTAGAGAAAATCTGGGCTGCTGAGGGTCTACCAAC
AGGAACAGGTGTGGTGGAGTGCACCATGCTGCCTCACGCGTACATGTGGC
CGACGGCCGAGGCTTACGAGGAGGGGTTACGCGCCGTGTACGAACGAGGA
GAAGACGGTCCGCCGCCCTCGCCCCTTGCCTCCTCCCCCCCCGTTACAGG
CGCCATGGCAAATGTGGTGGGAATGTTGGAGAGGGAGGCGGTTCGGGTGC
TTGAGGGAGGGAGAAAGGGAGAGAGGGAGGGCGATCTGGCGATTACGCCG
GTTGAGTAG
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Synonyms
Publications