NO21G01900.3, NO21G01900.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01900.3
Unique NameNO21G01900.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1594
Alignment locationchr21:564997..566721 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:564997..566721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01900.3 vs.
Match: EWM22692.1 (hypothetical protein Naga_102225g1 [Nannochloropsis gaditana])

HSP 1 Score: 132.5 bits (332), Expect = 2.200e-27
Identity = 68/105 (64.76%), Postives = 77/105 (73.33%), Query Frame = 0 
Query:  205 GVEKIWAAEGLPTGTGVVECTMLPHAYMWPTAEAYEEGLRAVYERGEDGPPPSPLASSPP------VTGAMANVVGMLEREAVRVLEGGRKGE-REGDLAITPVE 303
            GVEKIWAAEG+P+GTG+VEC MLPHAY WP+ +AYEEGLRAVYERGED P P PL  SPP       T AMA V+GMLE+EA RVLEG  +G   EG   + P E
Sbjct:   19 GVEKIWAAEGIPSGTGLVECQMLPHAYRWPSLQAYEEGLRAVYERGEDDPLP-PLPPSPPPSLATTATAAMAKVMGMLEKEAARVLEGEEEGRGGEGGAVVAPTE 122
The following BLAST results are available for this feature:
BLAST of NO21G01900.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
200400600800100012001400SequenceEWM22692.1
Match NameE-valueIdentityDescription
EWM22692.12.200e-2764.76hypothetical protein Naga_102225g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01900NO21G01900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01900.3NO21G01900.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01900.3.cds1NO21G01900.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01900.3 ID=NO21G01900.3|Name=NO21G01900.3|organism=Nannochloropsis oceanica|type=mRNA|length=1594bp
AACACAGCCACTGTGGCAGCAGTCAGCATGTCTTCCGCCTCTGTGCCAGC
CATATCTATGCCGGAAGGCGACATTCCGGTAGCAGCGGCCTCGTCTTCCA
AGGATGACGAGTCCTTGTCCACCATACCCCCAGCTAAGCCGCAATCCTAC
ATGCAACAAGCTTTGGGTCTCTTCCGCGCCTCCTGTGTCTTTGGTATCCT
CTTAGGAGCCACAGCTACAAACGTCACGGTTGCTATGCTCATCCACGCCG
TGACCCGGGATAGGAAAAAGGCGCAAGGTCGATGCGTGTACAGCATATGC
ATGATCACCAGCTGGGCTCTCAAATTTATTCCCTGGATCACCATTAAAAT
GAAATTGCCCCCGCAACCCATCGACTTCGAGCAATTCCTGCTCACGTCCA
ACCACATCTCCTTTATGGATCTGTTCTTCATCCAGGTAAGATTCTCACAA
GCCATTCCATCTTCCCTCCTCCTAACGTACCGCTAATTTTTCCACCCTTC
CTCCTTCCCTTCCTCCCTACCAGCATACCATGTACCATTCGCTTTCCCGA
CAAGCGATTCAGCGCGTCCGTCTCATTTACTGGGAGAAACTCGCCTCTAT
CCCTCTTGTCAAAGGTATCTTCACCCTGACTGGTGGTGTGCCGATTAAGA
TTTTAGGGAGCACGTCGCTGAAGGAGGGGGACAACAAGTATTGCAAAGAT
GTACGTCAGTCTGTCGGTTGCCGCCCTCTCCCCTTCTCCTCCTCCCTTCT
CTCCCCTTGTCGGCCTATTTCTCTTTTTCCATGGTTCAAAATTTCTCATC
CCCTCTTTGTCACTTCCTGCCTCCCTGGGCAGAGCGTCAAGGCCGTCTAC
GGCGCCGTCGACAAGGCAATCGTGGAAGACAAGCTCTCCATCGCCCTGTC
GTTCGAGGGGCGGCGCAACCCCAACCCGCCTACCCTCAGCAAGATCCAAC
GGGGCATGTTCAAAATGCACCAGCAATACAAGATTCCTGTCGTGCTTATC
CGTCTTCGAGGTTCGTTATCCCGTTACCCCTCCACCCCGCCTTCCTTCCT
TCCTTCCCTCTCTTCCCTCCGCTTCTCACTGTTAGTCCATCCTGAGCTGC
AACCCACTCATCCTTCCTTCCATTCCTCCCTCCATTCCTCAGGCGTAGAG
AAAATCTGGGCTGCTGAGGGTCTACCAACAGGAACAGGTGTGGTGGAGTG
CACCATGCTGCCTCACGCGTACATGTGGCCGACGGCCGAGGCTTACGAGG
AGGGGTTACGCGCCGTGTACGAACGAGGAGAAGACGGTCCGCCGCCCTCG
CCCCTTGCCTCCTCCCCCCCCGTTACAGGCGCCATGGCAAATGTGGTGGG
AATGTTGGAGAGGGAGGCGGTTCGGGTGCTTGAGGGAGGGAGAAAGGGAG
AGAGGGAGGGCGATCTGGCGATTACGCCGGTTGAGTAGGGCTGGAACGAG
GGAAGGGACGGAGGCAGGGAAGCAAAGAGAAAAGGCGATTAATTCAAACT
TTAGGTCAAAATTTTGTACAAGAGGGGGGGGGACGAGATAACATGCATTT
ACAAGAGCGAAAAGAAATATTGAAGGAAGTACCCATTATGACGG
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protein sequence of NO21G01900.3

>NO21G01900.3-protein ID=NO21G01900.3-protein|Name=NO21G01900.3|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MYHSLSRQAIQRVRLIYWEKLASIPLVKGIFTLTGGVPIKILGSTSLKEG
DNKYCKDVRQSVGCRPLPFSSSLLSPCRPISLFPWFKISHPLFVTSCLPG
QSVKAVYGAVDKAIVEDKLSIALSFEGRRNPNPPTLSKIQRGMFKMHQQY
KIPVVLIRLRGSLSRYPSTPPSFLPSLSSLRFSLLVHPELQPTHPSFHSS
LHSSGVEKIWAAEGLPTGTGVVECTMLPHAYMWPTAEAYEEGLRAVYERG
EDGPPPSPLASSPPVTGAMANVVGMLEREAVRVLEGGRKGEREGDLAITP
VE*
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mRNA from alignment at chr21:564997..566721+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01900.3 ID=NO21G01900.3|Name=NO21G01900.3|organism=Nannochloropsis oceanica|type=mRNA|length=1725bp|location=Sequence derived from alignment at chr21:564997..566721+ (Nannochloropsis oceanica)
AACACAGCCACTGTGGCAGCAGTCAGCATGTCTTCCGCCTCTGTGCCAGC
CATATCTATGCCGGAAGGCGACATTCCGGTAGCAGCGGCCTCGTCTTCCA
AGGATGACGAGTCCTTGTCCACCATACCCCCAGCTAAGCCGCAATCCTAC
ATGCAACAAGCTTTGGGTCTCTTCCGCGCCTCCTGTGTCTTTGGTATCCT
CTTAGGAGCCACAGCTACAAACGTCACGGTTGCTATGCTCATCCACGCCG
TGACCCGGGATAGGAAAAAGGCGCAAGGTATGTTGGAAGTGGGGCTAGGA
TTTTGCCATCTTTCCCCCTTTTCCCCTTTTCCCCACAGCTCTCATCTTTT
CCTGGTCCCCTCTGACAGTTGTACGCATATTTCTACATACATGCATATCT
CCTGGCAGGTCGATGCGTGTACAGCATATGCATGATCACCAGCTGGGCTC
TCAAATTTATTCCCTGGATCACCATTAAAATGAAATTGCCCCCGCAACCC
ATCGACTTCGAGCAATTCCTGCTCACGTCCAACCACATCTCCTTTATGGA
TCTGTTCTTCATCCAGGTAAGATTCTCACAAGCCATTCCATCTTCCCTCC
TCCTAACGTACCGCTAATTTTTCCACCCTTCCTCCTTCCCTTCCTCCCTA
CCAGCATACCATGTACCATTCGCTTTCCCGACAAGCGATTCAGCGCGTCC
GTCTCATTTACTGGGAGAAACTCGCCTCTATCCCTCTTGTCAAAGGTATC
TTCACCCTGACTGGTGGTGTGCCGATTAAGATTTTAGGGAGCACGTCGCT
GAAGGAGGGGGACAACAAGTATTGCAAAGATGTACGTCAGTCTGTCGGTT
GCCGCCCTCTCCCCTTCTCCTCCTCCCTTCTCTCCCCTTGTCGGCCTATT
TCTCTTTTTCCATGGTTCAAAATTTCTCATCCCCTCTTTGTCACTTCCTG
CCTCCCTGGGCAGAGCGTCAAGGCCGTCTACGGCGCCGTCGACAAGGCAA
TCGTGGAAGACAAGCTCTCCATCGCCCTGTCGTTCGAGGGGCGGCGCAAC
CCCAACCCGCCTACCCTCAGCAAGATCCAACGGGGCATGTTCAAAATGCA
CCAGCAATACAAGATTCCTGTCGTGCTTATCCGTCTTCGAGGTTCGTTAT
CCCGTTACCCCTCCACCCCGCCTTCCTTCCTTCCTTCCCTCTCTTCCCTC
CGCTTCTCACTGTTAGTCCATCCTGAGCTGCAACCCACTCATCCTTCCTT
CCATTCCTCCCTCCATTCCTCAGGCGTAGAGAAAATCTGGGCTGCTGAGG
GTCTACCAACAGGAACAGGTGTGGTGGAGTGCACCATGCTGCCTCACGCG
TACATGTGGCCGACGGCCGAGGCTTACGAGGAGGGGTTACGCGCCGTGTA
CGAACGAGGAGAAGACGGTCCGCCGCCCTCGCCCCTTGCCTCCTCCCCCC
CCGTTACAGGCGCCATGGCAAATGTGGTGGGAATGTTGGAGAGGGAGGCG
GTTCGGGTGCTTGAGGGAGGGAGAAAGGGAGAGAGGGAGGGCGATCTGGC
GATTACGCCGGTTGAGTAGGGCTGGAACGAGGGAAGGGACGGAGGCAGGG
AAGCAAAGAGAAAAGGCGATTAATTCAAACTTTAGGTCAAAATTTTGTAC
AAGAGGGGGGGGGACGAGATAACATGCATTTACAAGAGCGAAAAGAAATA
TTGAAGGAAGTACCCATTATGACGG
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Coding sequence (CDS) from alignment at chr21:564997..566721+

>NO21G01900.3 ID=NO21G01900.3|Name=NO21G01900.3|organism=Nannochloropsis oceanica|type=CDS|length=909bp|location=Sequence derived from alignment at chr21:564997..566721+ (Nannochloropsis oceanica)
ATGTACCATTCGCTTTCCCGACAAGCGATTCAGCGCGTCCGTCTCATTTA
CTGGGAGAAACTCGCCTCTATCCCTCTTGTCAAAGGTATCTTCACCCTGA
CTGGTGGTGTGCCGATTAAGATTTTAGGGAGCACGTCGCTGAAGGAGGGG
GACAACAAGTATTGCAAAGATGTACGTCAGTCTGTCGGTTGCCGCCCTCT
CCCCTTCTCCTCCTCCCTTCTCTCCCCTTGTCGGCCTATTTCTCTTTTTC
CATGGTTCAAAATTTCTCATCCCCTCTTTGTCACTTCCTGCCTCCCTGGG
CAGAGCGTCAAGGCCGTCTACGGCGCCGTCGACAAGGCAATCGTGGAAGA
CAAGCTCTCCATCGCCCTGTCGTTCGAGGGGCGGCGCAACCCCAACCCGC
CTACCCTCAGCAAGATCCAACGGGGCATGTTCAAAATGCACCAGCAATAC
AAGATTCCTGTCGTGCTTATCCGTCTTCGAGGTTCGTTATCCCGTTACCC
CTCCACCCCGCCTTCCTTCCTTCCTTCCCTCTCTTCCCTCCGCTTCTCAC
TGTTAGTCCATCCTGAGCTGCAACCCACTCATCCTTCCTTCCATTCCTCC
CTCCATTCCTCAGGCGTAGAGAAAATCTGGGCTGCTGAGGGTCTACCAAC
AGGAACAGGTGTGGTGGAGTGCACCATGCTGCCTCACGCGTACATGTGGC
CGACGGCCGAGGCTTACGAGGAGGGGTTACGCGCCGTGTACGAACGAGGA
GAAGACGGTCCGCCGCCCTCGCCCCTTGCCTCCTCCCCCCCCGTTACAGG
CGCCATGGCAAATGTGGTGGGAATGTTGGAGAGGGAGGCGGTTCGGGTGC
TTGAGGGAGGGAGAAAGGGAGAGAGGGAGGGCGATCTGGCGATTACGCCG
GTTGAGTAG
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Synonyms
Publications