Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr21 | genome | chr21:564997..566721 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G01900.2 vs.
Match: EWM22682.1 (hypothetical protein Naga_100218g1 [Nannochloropsis gaditana]) HSP 1 Score: 166.8 bits (421), Expect = 1.500e-37 Identity = 88/139 (63.31%), Postives = 104/139 (74.82%), Query Frame = 0 Query: 1 MSSASVPAISMPEGDIPVAAASSSKDDESLSTIPPAKPQSYMQQALGLFRASCVFGILLGATATNVTVAMLIHAVTRDRKKAQGRCVYSICMITSWALKFIPWITIKMKLPPQPIDFEQFLLTSNHISFMDLFFIQHTM 140
M+SAS P G+ + + +D +L+ +KP S++ QAL LFRAS +LL AT NV A+LIHA TRD KKAQGR VY+ICMITSWALKFIPWITIK+KLPPQPIDFEQF+LTSNHISFMDLFFIQHT+
Sbjct: 1 MASASSPRAPTLGGEQGIGS-EPPVEDNTLAKAASSKPPSFLGQALSLFRASYAVSVLLSATTVNVAAALLIHAFTRDTKKAQGRSVYAICMITSWALKFIPWITIKVKLPPQPIDFEQFILTSNHISFMDLFFIQHTI 138
The following BLAST results are available for this feature:
BLAST of NO21G01900.2 vs.
Analysis Date: 2017-10-25 ( Homology annotation for N. oceanica IMET1)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| EWM22682.1 | 1.500e-37 | 63.31 | hypothetical protein Naga_100218g1 [Nannochloropsi... | [more] |
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO21G01900.2 ID=NO21G01900.2|Name=NO21G01900.2|organism=Nannochloropsis oceanica|type=mRNA|length=1506bp
AACACAGCCACTGTGGCAGCAGTCAGCATGTCTTCCGCCTCTGTGCCAGC
CATATCTATGCCGGAAGGCGACATTCCGGTAGCAGCGGCCTCGTCTTCCA
AGGATGACGAGTCCTTGTCCACCATACCCCCAGCTAAGCCGCAATCCTAC
ATGCAACAAGCTTTGGGTCTCTTCCGCGCCTCCTGTGTCTTTGGTATCCT
CTTAGGAGCCACAGCTACAAACGTCACGGTTGCTATGCTCATCCACGCCG
TGACCCGGGATAGGAAAAAGGCGCAAGGTCGATGCGTGTACAGCATATGC
ATGATCACCAGCTGGGCTCTCAAATTTATTCCCTGGATCACCATTAAAAT
GAAATTGCCCCCGCAACCCATCGACTTCGAGCAATTCCTGCTCACGTCCA
ACCACATCTCCTTTATGGATCTGTTCTTCATCCAGCATACCATGTACCAT
TCGCTTTCCCGACAAGCGATTCAGCGCGTCCGTCTCATTTACTGGGAGAA
ACTCGCCTCTATCCCTCTTGTCAAAGGTATCTTCACCCTGACTGGTGGTG
TGCCGATTAAGATTTTAGGGAGCACGTCGCTGAAGGAGGGGGACAACAAG
TATTGCAAAGATGTACGTCAGTCTGTCGGTTGCCGCCCTCTCCCCTTCTC
CTCCTCCCTTCTCTCCCCTTGTCGGCCTATTTCTCTTTTTCCATGGTTCA
AAATTTCTCATCCCCTCTTTGTCACTTCCTGCCTCCCTGGGCAGAGCGTC
AAGGCCGTCTACGGCGCCGTCGACAAGGCAATCGTGGAAGACAAGCTCTC
CATCGCCCTGTCGTTCGAGGGGCGGCGCAACCCCAACCCGCCTACCCTCA
GCAAGATCCAACGGGGCATGTTCAAAATGCACCAGCAATACAAGATTCCT
GTCGTGCTTATCCGTCTTCGAGGTTCGTTATCCCGTTACCCCTCCACCCC
GCCTTCCTTCCTTCCTTCCCTCTCTTCCCTCCGCTTCTCACTGTTAGTCC
ATCCTGAGCTGCAACCCACTCATCCTTCCTTCCATTCCTCCCTCCATTCC
TCAGGCGTAGAGAAAATCTGGGCTGCTGAGGGTCTACCAACAGGAACAGG
TGTGGTGGAGTGCACCATGCTGCCTCACGCGTACATGTGGCCGACGGCCG
AGGCTTACGAGGAGGGGTTACGCGCCGTGTACGAACGAGGAGAAGACGGT
CCGCCGCCCTCGCCCCTTGCCTCCTCCCCCCCCGTTACAGGCGCCATGGC
AAATGTGGTGGGAATGTTGGAGAGGGAGGCGGTTCGGGTGCTTGAGGGAG
GGAGAAAGGGAGAGAGGGAGGGCGATCTGGCGATTACGCCGGTTGAGTAG
GGCTGGAACGAGGGAAGGGACGGAGGCAGGGAAGCAAAGAGAAAAGGCGA
TTAATTCAAACTTTAGGTCAAAATTTTGTACAAGAGGGGGGGGGACGAGA
TAACATGCATTTACAAGAGCGAAAAGAAATATTGAAGGAAGTACCCATTA
TGACGG back to topprotein sequence of NO21G01900.2 >NO21G01900.2-protein ID=NO21G01900.2-protein|Name=NO21G01900.2|organism=Nannochloropsis oceanica|type=polypeptide|length=441bp
MSSASVPAISMPEGDIPVAAASSSKDDESLSTIPPAKPQSYMQQALGLFR
ASCVFGILLGATATNVTVAMLIHAVTRDRKKAQGRCVYSICMITSWALKF
IPWITIKMKLPPQPIDFEQFLLTSNHISFMDLFFIQHTMYHSLSRQAIQR
VRLIYWEKLASIPLVKGIFTLTGGVPIKILGSTSLKEGDNKYCKDVRQSV
GCRPLPFSSSLLSPCRPISLFPWFKISHPLFVTSCLPGQSVKAVYGAVDK
AIVEDKLSIALSFEGRRNPNPPTLSKIQRGMFKMHQQYKIPVVLIRLRGS
LSRYPSTPPSFLPSLSSLRFSLLVHPELQPTHPSFHSSLHSSGVEKIWAA
EGLPTGTGVVECTMLPHAYMWPTAEAYEEGLRAVYERGEDGPPPSPLASS
PPVTGAMANVVGMLEREAVRVLEGGRKGEREGDLAITPVE* back to topmRNA from alignment at chr21:564997..566721+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO21G01900.2 ID=NO21G01900.2|Name=NO21G01900.2|organism=Nannochloropsis oceanica|type=mRNA|length=1725bp|location=Sequence derived from alignment at chr21:564997..566721+ (Nannochloropsis oceanica)
AACACAGCCACTGTGGCAGCAGTCAGCATGTCTTCCGCCTCTGTGCCAGC
CATATCTATGCCGGAAGGCGACATTCCGGTAGCAGCGGCCTCGTCTTCCA
AGGATGACGAGTCCTTGTCCACCATACCCCCAGCTAAGCCGCAATCCTAC
ATGCAACAAGCTTTGGGTCTCTTCCGCGCCTCCTGTGTCTTTGGTATCCT
CTTAGGAGCCACAGCTACAAACGTCACGGTTGCTATGCTCATCCACGCCG
TGACCCGGGATAGGAAAAAGGCGCAAGGTATGTTGGAAGTGGGGCTAGGA
TTTTGCCATCTTTCCCCCTTTTCCCCTTTTCCCCACAGCTCTCATCTTTT
CCTGGTCCCCTCTGACAGTTGTACGCATATTTCTACATACATGCATATCT
CCTGGCAGGTCGATGCGTGTACAGCATATGCATGATCACCAGCTGGGCTC
TCAAATTTATTCCCTGGATCACCATTAAAATGAAATTGCCCCCGCAACCC
ATCGACTTCGAGCAATTCCTGCTCACGTCCAACCACATCTCCTTTATGGA
TCTGTTCTTCATCCAGGTAAGATTCTCACAAGCCATTCCATCTTCCCTCC
TCCTAACGTACCGCTAATTTTTCCACCCTTCCTCCTTCCCTTCCTCCCTA
CCAGCATACCATGTACCATTCGCTTTCCCGACAAGCGATTCAGCGCGTCC
GTCTCATTTACTGGGAGAAACTCGCCTCTATCCCTCTTGTCAAAGGTATC
TTCACCCTGACTGGTGGTGTGCCGATTAAGATTTTAGGGAGCACGTCGCT
GAAGGAGGGGGACAACAAGTATTGCAAAGATGTACGTCAGTCTGTCGGTT
GCCGCCCTCTCCCCTTCTCCTCCTCCCTTCTCTCCCCTTGTCGGCCTATT
TCTCTTTTTCCATGGTTCAAAATTTCTCATCCCCTCTTTGTCACTTCCTG
CCTCCCTGGGCAGAGCGTCAAGGCCGTCTACGGCGCCGTCGACAAGGCAA
TCGTGGAAGACAAGCTCTCCATCGCCCTGTCGTTCGAGGGGCGGCGCAAC
CCCAACCCGCCTACCCTCAGCAAGATCCAACGGGGCATGTTCAAAATGCA
CCAGCAATACAAGATTCCTGTCGTGCTTATCCGTCTTCGAGGTTCGTTAT
CCCGTTACCCCTCCACCCCGCCTTCCTTCCTTCCTTCCCTCTCTTCCCTC
CGCTTCTCACTGTTAGTCCATCCTGAGCTGCAACCCACTCATCCTTCCTT
CCATTCCTCCCTCCATTCCTCAGGCGTAGAGAAAATCTGGGCTGCTGAGG
GTCTACCAACAGGAACAGGTGTGGTGGAGTGCACCATGCTGCCTCACGCG
TACATGTGGCCGACGGCCGAGGCTTACGAGGAGGGGTTACGCGCCGTGTA
CGAACGAGGAGAAGACGGTCCGCCGCCCTCGCCCCTTGCCTCCTCCCCCC
CCGTTACAGGCGCCATGGCAAATGTGGTGGGAATGTTGGAGAGGGAGGCG
GTTCGGGTGCTTGAGGGAGGGAGAAAGGGAGAGAGGGAGGGCGATCTGGC
GATTACGCCGGTTGAGTAGGGCTGGAACGAGGGAAGGGACGGAGGCAGGG
AAGCAAAGAGAAAAGGCGATTAATTCAAACTTTAGGTCAAAATTTTGTAC
AAGAGGGGGGGGGACGAGATAACATGCATTTACAAGAGCGAAAAGAAATA
TTGAAGGAAGTACCCATTATGACGG back to topCoding sequence (CDS) from alignment at chr21:564997..566721+ >NO21G01900.2 ID=NO21G01900.2|Name=NO21G01900.2|organism=Nannochloropsis oceanica|type=CDS|length=1323bp|location=Sequence derived from alignment at chr21:564997..566721+ (Nannochloropsis oceanica)
ATGTCTTCCGCCTCTGTGCCAGCCATATCTATGCCGGAAGGCGACATTCC
GGTAGCAGCGGCCTCGTCTTCCAAGGATGACGAGTCCTTGTCCACCATAC
CCCCAGCTAAGCCGCAATCCTACATGCAACAAGCTTTGGGTCTCTTCCGC
GCCTCCTGTGTCTTTGGTATCCTCTTAGGAGCCACAGCTACAAACGTCAC
GGTTGCTATGCTCATCCACGCCGTGACCCGGGATAGGAAAAAGGCGCAAG
GTCGATGCGTGTACAGCATATGCATGATCACCAGCTGGGCTCTCAAATTT
ATTCCCTGGATCACCATTAAAATGAAATTGCCCCCGCAACCCATCGACTT
CGAGCAATTCCTGCTCACGTCCAACCACATCTCCTTTATGGATCTGTTCT
TCATCCAGCATACCATGTACCATTCGCTTTCCCGACAAGCGATTCAGCGC
GTCCGTCTCATTTACTGGGAGAAACTCGCCTCTATCCCTCTTGTCAAAGG
TATCTTCACCCTGACTGGTGGTGTGCCGATTAAGATTTTAGGGAGCACGT
CGCTGAAGGAGGGGGACAACAAGTATTGCAAAGATGTACGTCAGTCTGTC
GGTTGCCGCCCTCTCCCCTTCTCCTCCTCCCTTCTCTCCCCTTGTCGGCC
TATTTCTCTTTTTCCATGGTTCAAAATTTCTCATCCCCTCTTTGTCACTT
CCTGCCTCCCTGGGCAGAGCGTCAAGGCCGTCTACGGCGCCGTCGACAAG
GCAATCGTGGAAGACAAGCTCTCCATCGCCCTGTCGTTCGAGGGGCGGCG
CAACCCCAACCCGCCTACCCTCAGCAAGATCCAACGGGGCATGTTCAAAA
TGCACCAGCAATACAAGATTCCTGTCGTGCTTATCCGTCTTCGAGGTTCG
TTATCCCGTTACCCCTCCACCCCGCCTTCCTTCCTTCCTTCCCTCTCTTC
CCTCCGCTTCTCACTGTTAGTCCATCCTGAGCTGCAACCCACTCATCCTT
CCTTCCATTCCTCCCTCCATTCCTCAGGCGTAGAGAAAATCTGGGCTGCT
GAGGGTCTACCAACAGGAACAGGTGTGGTGGAGTGCACCATGCTGCCTCA
CGCGTACATGTGGCCGACGGCCGAGGCTTACGAGGAGGGGTTACGCGCCG
TGTACGAACGAGGAGAAGACGGTCCGCCGCCCTCGCCCCTTGCCTCCTCC
CCCCCCGTTACAGGCGCCATGGCAAATGTGGTGGGAATGTTGGAGAGGGA
GGCGGTTCGGGTGCTTGAGGGAGGGAGAAAGGGAGAGAGGGAGGGCGATC
TGGCGATTACGCCGGTTGAGTAG back to top
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