NO07G00860, NO07G00860 (gene) Nannochloropsis oceanica

Overview
NameNO07G00860
Unique NameNO07G00860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1883
Alignment locationchr7:284590..286890 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:284590..286890 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO07G00860 vs. NCBI_GenBank
Match: XP_005855064.1 (hypothetical protein NGA_0353900, partial [Nannochloropsis gaditana CCMP526] >EKU21300.1 hypothetical protein NGA_0353900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 199.9 bits (507), Expect = 9.800e-48
Identity = 118/210 (56.19%), Postives = 130/210 (61.90%), Query Frame = 0 
Query:   50 HTLIDEENELNRPTSPVAISGLYLFILEFLTIGLVLSKALHTNAGKKFVRVAREGCDLAWADMEGDHSTIACCSHTPSLPSSPS------LGND-------ERWDAALCAAATSAGTKRLTSSLAALLPFLTWGLNCLF-XXXXXXXXXXXXXXXXXXXXXXXAGR-----VWMGQYRRLGLYAFVIMFRTGVLLMCLNRVQAWVQGEEG 241
            H   +EE  L+RP+SPVAISG YLF LE LTI LV SKALH NAGKK+VRV + GC +AWADM GDHST+ACC    SLPSS +      LG D       + W   LCAAATS  TK LTS LA +LPF+TW LNCLF                         GR     +W GQ RRLGLYA VIMFRT VLLM LNRVQAWVQ EEG
Sbjct:   14 HPATEEEGTLDRPSSPVAISGFYLFTLELLTIALVFSKALHHNAGKKYVRVVQPGCHVAWADMNGDHSTVACC----SLPSSSTTFLSFLLGGDDPPSEGQDGWKNPLCAAATSPRTKHLTSGLALVLPFVTWFLNCLFSAVAGWWGEGGRTEKGRGKDEEGKEGRRRREAIWTGQRRRLGLYAAVIMFRTAVLLMLLNRVQAWVQAEEG 219
[Close]
BLAST of NO07G00860 vs. NCBI_GenBank
Match: EWM27345.1 (hypothetical protein Naga_100226g10 [Nannochloropsis gaditana])

HSP 1 Score: 199.9 bits (507), Expect = 9.800e-48
Identity = 118/210 (56.19%), Postives = 130/210 (61.90%), Query Frame = 0 
Query:   50 HTLIDEENELNRPTSPVAISGLYLFILEFLTIGLVLSKALHTNAGKKFVRVAREGCDLAWADMEGDHSTIACCSHTPSLPSSPS------LGND-------ERWDAALCAAATSAGTKRLTSSLAALLPFLTWGLNCLF-XXXXXXXXXXXXXXXXXXXXXXXAGR-----VWMGQYRRLGLYAFVIMFRTGVLLMCLNRVQAWVQGEEG 241
            H   +EE  L+RP+SPVAISG YLF LE LTI LV SKALH NAGKK+VRV + GC +AWADM GDHST+ACC    SLPSS +      LG D       + W   LCAAATS  TK LTS LA +LPF+TW LNCLF                         GR     +W GQ RRLGLYA VIMFRT VLLM LNRVQAWVQ EEG
Sbjct:   27 HPATEEEGTLDRPSSPVAISGFYLFTLELLTIALVFSKALHHNAGKKYVRVVQPGCHVAWADMNGDHSTVACC----SLPSSSTTFLSFLLGGDDPPSEGQDGWKNPLCAAATSPRTKHLTSGLALVLPFVTWFLNCLFSAVAGWWGEGGRTEKGRGKDEEGKEGRRRREAIWTGQRRRLGLYAAVIMFRTAVLLMLLNRVQAWVQAEEG 232
[Close]
BLAST of NO07G00860 vs. NCBI_GenBank
Match: XP_005855893.1 (hypothetical protein NGA_0557200 [Nannochloropsis gaditana CCMP526] >EKU20469.1 hypothetical protein NGA_0557200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 148.3 bits (373), Expect = 3.400e-32
Identity = 89/178 (50.00%), Postives = 107/178 (60.11%), Query Frame = 0 
Query:   17 TKKQAASSSRSPSRDGMQTRSSAKATKREENHA------HTLIDEENELNRPTSPVAISGLYLFILEFLTIGLVLSKALHTNAGKKFVRVAREGCDLAWADMEGDHSTIACCSHTPSLPSSPS------LGND-------ERWDAALCAAATSAGTKRLTSSLAALLPFLTWGLNCLF 176
            ++    S  R   +    +RS+     ++E         H   +EE  L+RP+SPVAISG YLF LE LTI LV SKALH NAGKK+VRV + GC +AWADM GDHST+ACC    SLPSS +      LG D       + W   LCAAATS  TK LTS LA +LPF+TW LNCLF
Sbjct:    8 SRPSTTSRQRMAGKKAFSSRSTEVQGDKQERDTTPIGWQHPATEEEGTLDRPSSPVAISGFYLFTLELLTIALVFSKALHHNAGKKYVRVVQPGCHVAWADMNGDHSTVACC----SLPSSSTTFLSFLLGGDDPPSEGQDGWKNPLCAAATSPRTKHLTSGLALVLPFVTWFLNCLF 181
The following BLAST results are available for this feature:
BLAST of NO07G00860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005855064.19.800e-4856.19hypothetical protein NGA_0353900, partial [Nannoch... [more]
EWM27345.19.800e-4856.19hypothetical protein Naga_100226g10 [Nannochlorops... [more]
XP_005855893.13.400e-3250.00hypothetical protein NGA_0557200 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL093nonsL093Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR132ngnoR132Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000848NSK000848Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G00860.8NO07G00860.8-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO07G00860.7NO07G00860.7-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO07G00860.6NO07G00860.6-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO07G00860.5NO07G00860.5-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO07G00860.4NO07G00860.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO07G00860.3NO07G00860.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO07G00860.2NO07G00860.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO07G00860.1NO07G00860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G00860.8NO07G00860.8Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO07G00860.7NO07G00860.7Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO07G00860.6NO07G00860.6Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO07G00860.5NO07G00860.5Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO07G00860.4NO07G00860.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO07G00860.3NO07G00860.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO07G00860.2NO07G00860.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO07G00860.1NO07G00860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100226g10gene3217Nannochloropsis gaditana (N. gaditana B-31)gene
jgi.p|Nanoce1779_2|580235gene_2402Nannochloropsis oceanica (N. oceanica CCMP1779)gene


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G00860 ID=NO07G00860|Name=NO07G00860|organism=Nannochloropsis oceanica|type=gene|length=1883bp
TTCAATACCAGTACTAGACCAGGCAGCCTTGACGCAAAGTTTGAGGTACC
AGTTTGAGAGCCTCTCCCCTACTTCCAGAGTGCATTTAATGTCACTTTAC
GGCCAAATTATTGCCATACCAAATATGGGACACTAAATTGTCCGACCAAA
CTTCCATCCTCCGATTTGTGGCGCAGACGGTTGGCGAAACAAAAAATACG
AGGAGCCCGAGTGTGCCTTACAGTAACCCAACATCAATCACCACGGCATT
CTACAGTCCATGGCCGGATCACCTGCCACAGGAGATGCTGCTGTCGTTCA
CTACCGCACGAAGAAACAAGCCGCATCGTCCTCACGGTCCCCATCTCGAG
gtaagcaggcatgcgtagcctccccccccacctcttgtataagaccaggt
ggaacatgaacactttcatcctttactcgaatgcctgggattaatgccac
gcatgcctcaacgcggagattgattacatacgattcttcagcaaagctta
agaatgtcaaatagtgcctcttttgatcacttcatatctgcatcctccct
tgcctgcgctccctccgcataccagACGGTATGCAGACCCGCAGCAGCGC
CAAGGCCACAAAACGGGAAGAGAACCACGCCCACACCCTCATCGACGAAG
AAAATGAACTTAATAGACCCACCTCTCCCGTGGCGATCTCGgtacggttt
tcgaagaggggggggggggagctcgcctgccctgtgtcttccatactcac
cctccctcccttcgtcccgttcctcagGGCCTGTATCTCTTCATTCTCGA
ATTTCTCACGATCGGTCTCGTCCTCTCGAAAGCACTGCATACCAATGCCG
GCAAGAAATTCGTTCGCGTTGCCCGAGAAGGCTGCGACTTGGCCTGGGCT
GACATGGAGGGAGACCACTCCACCATTGCCTGTTGCTCCCACACTCCCTC
CCTCCCTTCCTCACCCTCCCTTGGAAACGATGAGAGATGGGATGCGGCGT
TGTGTGCTGCTGCTACTTCTGCGGGGACCAAGCGGTTGACAAGTTCCCTT
GCTGCCCTTCTTCCCTTCCTCACCTGGGGGTTGAATTGCCTGTTTTTTGC
AGCGACGTCATGGTGGAGGAGAAGGAGGAGGGGGGGAAGGGAGGGCTGGG
AGGAGGAAGAGAAGGCGGGAAGAGTGTGGATGGGACAATATAGACGGTTA
GGGTTATATGCATTCGTGATCATGTTTCGGACGGGCGTGTTGTTGATGTG
CTTGAATCGAGTGCAGGCATGGGTGCAAGGTGAGGAGGGGAAGGAAAGTG
GGAGGGGGGGAGGAAAGAGGGATAAGTTCTTGACTAAGGAGGTTGGATGC
TCATCTTTGTAGTATTTTGTCTCATATATATATATGTTTCCCACCTCATA
TTGTCCTTCCCCCTCTGCCTCCTTTCCCTCAGCGGAGGAGAGCGATGCGT
GCTGGTACTCTGGATTGAGGCACGACGGGCGGTGTCGAGAGCGGTTTGAT
TTCGCCGATCACGGCGTCTTGTTCCTGTCGCAATATTTGGCCATCCAGAC
ATTCGAAGTGCTGGCAGTGCTCAGAGAGGTCAGGAAGTAGAGAGGAAGGG
AGGGAGGGAGGAAGGAAGGGAGGAAGGAAGGAAGAAGGTGAGCGCCAGCG
ATTTAGGAAAAAGGCTGTCAATGTGTACCTACACTCAAAATTGTCCCCTC
CGTTTCCCATCCTTTCAAACAGGCCACATCTCTCCCCCATCTCCTCTTAT
GCATTACCACGGCCTGTCTTATCTCCCTCATTTCTCTCGTCGGATTCTAC
GACACGGTCAGCTTCTTCCACACGCGGTTGGAGAGTGTGGTGGGCGTTGT
GTTGTGTAAGTTGAGGAGGGAGGGAGATTGTGT
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protein sequence of NO07G00860.8

>NO07G00860.8-protein ID=NO07G00860.8-protein|Name=NO07G00860.8|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MAGSPATGDAAVVHYRTKKQAASSSRSPSRDGMQTRSSAKATKREENHAH
TLIDEENELNRPTSPVAISGLYLFILEFLTIGLVLSKALHTNAGKKFVRV
AREGCDLAWADMEGDHSTIACCSHTPSLPSSPSLGNDERWDAALCAAATS
AGTKRLTSSLAALLPFLTWGLNCLFFAATSWWRRRRRGGREGWEEEEKAG
RVWMGQYRRLGLYAFVIMFRTGVLLMCLNRVQAWVQGEEGKESGRGGGKR
DKFLTKEVGCSSL*
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protein sequence of NO07G00860.7

>NO07G00860.7-protein ID=NO07G00860.7-protein|Name=NO07G00860.7|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MQTRSSAKATKREENHAHTLIDEENELNRPTSPVAISGLYLFILEFLTIG
LVLSKALHTNAGKKFVRVAREGCDLAWADMEGDHSTIACCSHTPSLPSSP
SLGNDERWDAALCAAATSAGTKRLTSSLAALLPFLTWGLNCLFFAATSWW
RRRRRGGREGWEEEEKAGRVWMGQYRRLGLYAFVIMFRTGVLLMCLNRVQ
AWVQAEESDACWYSGLRHDGRCRERFDFADHGVLFLSQYLAIQTFEVLAV
LREVRK*
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protein sequence of NO07G00860.6

>NO07G00860.6-protein ID=NO07G00860.6-protein|Name=NO07G00860.6|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MAGSPATGDAAVVHYRTKKQAASSSRSPSRDGMQTRSSAKATKREENHAH
TLIDEENELNRPTSPVAISGLYLFILEFLTIGLVLSKALHTNAGKKFVRV
AREGCDLAWADMEGDHSTIACCSHTPSLPSSPSLGNDERWDAALCAAATS
AGTKRLTSSLAALLPFLTWGLNCLFFAATSWWRRRRRGGREGWEEEEKAG
RVWMGQYRRLGLYAFVIMFRTGVLLMCLNRVQAWVQGEEGKESGRGGGKR
DKFLTKEVGCSSL*
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protein sequence of NO07G00860.5

>NO07G00860.5-protein ID=NO07G00860.5-protein|Name=NO07G00860.5|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MAGSPATGDAAVVHYRTKKQAASSSRSPSRDGMQTRSSAKATKREENHAH
TLIDEENELNRPTSPVAISGLYLFILEFLTIGLVLSKALHTNAGKKFVRV
AREGCDLAWADMEGDHSTIACCSHTPSLPSSPSLGNDERWDAALCAAATS
AGTKRLTSSLAALLPFLTWGLNCLFFAATSWWRRRRRGGREGWEEEEKAG
RVWMGQYRRLGLYAFVIMFRTGVLLMCLNRVQAWVQAEESDACWYSGLRH
DGRCRERFDFADHGVLFLSQYLAIQTFEVLAVLREVRK*
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protein sequence of NO07G00860.4

>NO07G00860.4-protein ID=NO07G00860.4-protein|Name=NO07G00860.4|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MAGSPATGDAAVVHYRTKKQAASSSRSPSRDGMQTRSSAKATKREENHAH
TLIDEENELNRPTSPVAISGLYLFILEFLTIGLVLSKALHTNAGKKFVRV
AREGCDLAWADMEGDHSTIACCSHTPSLPSSPSLGNDERWDAALCAAATS
AGTKRLTSSLAALLPFLTWGLNCLFFAATSWWRRRRRGGREGWEEEEKAG
RVWMGQYRRLGLYAFVIMFRTGVLLMCLNRVQAWVQGEEGKESGRGGGKR
DKFLTKEVGCSSL*
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protein sequence of NO07G00860.3

>NO07G00860.3-protein ID=NO07G00860.3-protein|Name=NO07G00860.3|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MAGSPATGDAAVVHYRTKKQAASSSRSPSRDGMQTRSSAKATKREENHAH
TLIDEENELNRPTSPVAISGLYLFILEFLTIGLVLSKALHTNAGKKFVRV
AREGCDLAWADMEGDHSTIACCSHTPSLPSSPSLGNDERWDAALCAAATS
AGTKRLTSSLAALLPFLTWGLNCLFFAATSWWRRRRRGGREGWEEEEKAG
RVWMGQYRRLGLYAFVIMFRTGVLLMCLNRVQAWVQAEESDACWYSGLRH
DGRCRERFDFADHGVLFLSQYLAIQTFEVLAVLREVRK*
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protein sequence of NO07G00860.2

>NO07G00860.2-protein ID=NO07G00860.2-protein|Name=NO07G00860.2|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MQTRSSAKATKREENHAHTLIDEENELNRPTSPVAISGLYLFILEFLTIG
LVLSKALHTNAGKKFVRVAREGCDLAWADMEGDHSTIACCSHTPSLPSSP
SLGNDERWDAALCAAATSAGTKRLTSSLAALLPFLTWGLNCLFFAATSWW
RRRRRGGREGWEEEEKAGRVWMGQYRRLGLYAFVIMFRTGVLLMCLNRVQ
AWVQAEESDACWYSGLRHDGRCRERFDFADHGVLFLSQYLAIQTFEVLAV
LREATSLPHLLLCITTACLISLISLVGFYDTVSFFHTRLESVVGVVLSFL
TVQLPLMLIASGRLSHHRYLRISHYIKV*
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protein sequence of NO07G00860.1

>NO07G00860.1-protein ID=NO07G00860.1-protein|Name=NO07G00860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MAGSPATGDAAVVHYRTKKQAASSSRSPSRDGMQTRSSAKATKREENHAH
TLIDEENELNRPTSPVAISGLYLFILEFLTIGLVLSKALHTNAGKKFVRV
AREGCDLAWADMEGDHSTIACCSHTPSLPSSPSLGNDERWDAALCAAATS
AGTKRLTSSLAALLPFLTWGLNCLFFAATSWWRRRRRGGREGWEEEEKAG
RVWMGQYRRLGLYAFVIMFRTGVLLMCLNRVQAWVQAEESDACWYSGLRH
DGRCRERFDFADHGVLFLSQYLAIQTFEVLAVLREATSLPHLLLCITTAC
LISLISLVGFYDTVSFFHTRLESVVGVVLSFLTVQLPLMLIASGRLSHHR
YLRISHYIKV*
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Synonyms
Publications