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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr7 | genome | chr7:284590..286890 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G00860.3 vs.
Match: EWM27345.1 (hypothetical protein Naga_100226g10 [Nannochloropsis gaditana]) HSP 1 Score: 311.2 bits (796), Expect = 3.300e-81 Identity = 168/260 (64.62%), Postives = 184/260 (70.77%), Query Frame = 0
Query: 50 HTLIDEENELNRPTSPVAISGLYLFILEFLTIGLVLSKALHTNAGKKFVRVAREGCDLAWADMEGDHSTIACCSHTPSLPSSPS------LGNDER-------WDAALCAAATSAGTKRLTSSLAALLPFLTWGLNCLFFAATSWWRRRRRGGR----EGWEEEEKAGR-----VWMGQYRRLGLYAFVIMFRTGVLLMCLNRVQAWVQAEESDACWYSGLRHDGRCRERFDFADHGVLFLSQYLAIQTFEVLAVLREVR 288
H +EE L+RP+SPVAISG YLF LE LTI LV SKALH NAGKK+VRV + GC +AWADM GDHST+ACCS LPSS + LG D+ W LCAAATS TK LTS LA +LPF+TW LNCLF A WW GGR G +EE K GR +W GQ RRLGLYA VIMFRT VLLM LNRVQAWVQAEE D CWYS LRHDGRCRERFDFADHGVLF+SQYLAIQTFE +A+LRE R
Sbjct: 27 HPATEEEGTLDRPSSPVAISGFYLFTLELLTIALVFSKALHHNAGKKYVRVVQPGCHVAWADMNGDHSTVACCS----LPSSSTTFLSFLLGGDDPPSEGQDGWKNPLCAAATSPRTKHLTSGLALVLPFVTWFLNCLFSAVAGWW---GEGGRTEKGRGKDEEGKEGRRRREAIWTGQRRRLGLYAAVIMFRTAVLLMLLNRVQAWVQAEEGDTCWYSALRHDGRCRERFDFADHGVLFISQYLAIQTFETVAILREAR 279
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G00860.3 ID=NO07G00860.3|Name=NO07G00860.3|organism=Nannochloropsis oceanica|type=mRNA|length=1619bp
TTCAATACCAGTACTAGACCAGGCAGCCTTGACGCAAAGTTTGAGGTACC
AGTTTGAGAGCCTCTCCCCTACTTCCAGAGTGCATTTAATGTCACTTTAC
GGCCAAATTATTGCCATACCAAATATGGGACACTAAATTGTCCGACCAAA
CTTCCATCCTCCGATTTGTGGCGCAGACGGTTGGCGAAACAAAAAATACG
AGGAGCCCGAGTGTGCCTTACAGTAACCCAACATCAATCACCACGGCATT
CTACAGTCCATGGCCGGATCACCTGCCACAGGAGATGCTGCTGTCGTTCA
CTACCGCACGAAGAAACAAGCCGCATCGTCCTCACGGTCCCCATCTCGAG
ACGGTATGCAGACCCGCAGCAGCGCCAAGGCCACAAAACGGGAAGAGAAC
CACGCCCACACCCTCATCGACGAAGAAAATGAACTTAATAGACCCACCTC
TCCCGTGGCGATCTCGGGCCTGTATCTCTTCATTCTCGAATTTCTCACGA
TCGGTCTCGTCCTCTCGAAAGCACTGCATACCAATGCCGGCAAGAAATTC
GTTCGCGTTGCCCGAGAAGGCTGCGACTTGGCCTGGGCTGACATGGAGGG
AGACCACTCCACCATTGCCTGTTGCTCCCACACTCCCTCCCTCCCTTCCT
CACCCTCCCTTGGAAACGATGAGAGATGGGATGCGGCGTTGTGTGCTGCT
GCTACTTCTGCGGGGACCAAGCGGTTGACAAGTTCCCTTGCTGCCCTTCT
TCCCTTCCTCACCTGGGGGTTGAATTGCCTGTTTTTTGCAGCGACGTCAT
GGTGGAGGAGAAGGAGGAGGGGGGGAAGGGAGGGCTGGGAGGAGGAAGAG
AAGGCGGGAAGAGTGTGGATGGGACAATATAGACGGTTAGGGTTATATGC
ATTCGTGATCATGTTTCGGACGGGCGTGTTGTTGATGTGCTTGAATCGAG
TGCAGGCATGGGTGCAAGCGGAGGAGAGCGATGCGTGCTGGTACTCTGGA
TTGAGGCACGACGGGCGGTGTCGAGAGCGGTTTGATTTCGCCGATCACGG
CGTCTTGTTCCTGTCGCAATATTTGGCCATCCAGACATTCGAAGTGCTGG
CAGTGCTCAGAGAGGTCAGGAAGTAGAGAGGAAGGGAGGGAGGGAGGAAG
GAAGGGAGGAAGGAAGGAAGAAGGTGAGCGCCAGCGATTTAGGAAAAAGG
CTGTCAATGTGTACCTACACTCAAAATTGTCCCCTCCGTTTCCCATCCTT
TCAAACAGGCCACATCTCTCCCCCATCTCCTCTTATGCATTACCACGGCC
TGTCTTATCTCCCTCATTTCTCTCGTCGGATTCTACGACACGGTCAGCTT
CTTCCACACGCGGTTGGAGAGTGTGGTGGGCGTTGTGTTGTCCTTCCTCA
CGGTCCAGCTACCCCTCATGCTCATCGCCTCGGGTCGGCTCTCCCACCAC
CGGTACCTCCGCATCAGCCACTACATCAAAGTTTAACTCTGATGCAATCA
AATTCTTGAACAAAACATACAGGGTTCGAAATGAGTTACTGAATTGCACT
TATCGAGACTCCGGTAAAGAGGAGGAAAAGGGTTTCTAAAGAGAGGCAAA
ATCCAACTTGTAAAATCAA back to topprotein sequence of NO07G00860.3 >NO07G00860.3-protein ID=NO07G00860.3-protein|Name=NO07G00860.3|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MAGSPATGDAAVVHYRTKKQAASSSRSPSRDGMQTRSSAKATKREENHAH
TLIDEENELNRPTSPVAISGLYLFILEFLTIGLVLSKALHTNAGKKFVRV
AREGCDLAWADMEGDHSTIACCSHTPSLPSSPSLGNDERWDAALCAAATS
AGTKRLTSSLAALLPFLTWGLNCLFFAATSWWRRRRRGGREGWEEEEKAG
RVWMGQYRRLGLYAFVIMFRTGVLLMCLNRVQAWVQAEESDACWYSGLRH
DGRCRERFDFADHGVLFLSQYLAIQTFEVLAVLREVRK* back to topmRNA from alignment at chr7:284590..286890- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G00860.3 ID=NO07G00860.3|Name=NO07G00860.3|organism=Nannochloropsis oceanica|type=mRNA|length=2301bp|location=Sequence derived from alignment at chr7:284590..286890- (Nannochloropsis oceanica)
TTCAATACCAGTACTAGACCAGGCAGCCTTGACGCAAAGTTTGAGGTACC
AGTTTGAGAGCCTCTCCCCTACTTCCAGAGTGCATTTAATGTCACTTTAC
GGCCAAATTATTGCCATACCAAATATGGGACACTAAATTGTCCGACCAAA
CTTCCATCCTCCGATTTGTGGCGCAGACGGTTGGCGAAACAAAAAATACG
AGGAGCCCGAGTGTGCCTTACAGTAACCCAACATCAATCACCACGGCATT
CTACAGTCCATGGCCGGATCACCTGCCACAGGAGATGCTGCTGTCGTTCA
CTACCGCACGAAGAAACAAGCCGCATCGTCCTCACGGTCCCCATCTCGAG
GTAAGCAGGCATGCGTAGCCTCCCCCCCCACCTCTTGTATAAGACCAGGT
GGAACATGAACACTTTCATCCTTTACTCGAATGCCTGGGATTAATGCCAC
GCATGCCTCAACGCGGAGATTGATTACATACGATTCTTCAGCAAAGCTTA
AGAATGTCAAATAGTGCCTCTTTTGATCACTTCATATCTGCATCCTCCCT
TGCCTGCGCTCCCTCCGCATACCAGACGGTATGCAGACCCGCAGCAGCGC
CAAGGCCACAAAACGGGAAGAGAACCACGCCCACACCCTCATCGACGAAG
AAAATGAACTTAATAGACCCACCTCTCCCGTGGCGATCTCGGTACGGTTT
TCGAAGAGGGGGGGGGGGGAGCTCGCCTGCCCTGTGTCTTCCATACTCAC
CCTCCCTCCCTTCGTCCCGTTCCTCAGGGCCTGTATCTCTTCATTCTCGA
ATTTCTCACGATCGGTCTCGTCCTCTCGAAAGCACTGCATACCAATGCCG
GCAAGAAATTCGTTCGCGTTGCCCGAGAAGGCTGCGACTTGGCCTGGGCT
GACATGGAGGGAGACCACTCCACCATTGCCTGTTGCTCCCACACTCCCTC
CCTCCCTTCCTCACCCTCCCTTGGAAACGATGAGAGATGGGATGCGGCGT
TGTGTGCTGCTGCTACTTCTGCGGGGACCAAGCGGTTGACAAGTTCCCTT
GCTGCCCTTCTTCCCTTCCTCACCTGGGGGTTGAATTGCCTGTTTTTTGC
AGCGACGTCATGGTGGAGGAGAAGGAGGAGGGGGGGAAGGGAGGGCTGGG
AGGAGGAAGAGAAGGCGGGAAGAGTGTGGATGGGACAATATAGACGGTTA
GGGTTATATGCATTCGTGATCATGTTTCGGACGGGCGTGTTGTTGATGTG
CTTGAATCGAGTGCAGGCATGGGTGCAAGGTGAGGAGGGGAAGGAAAGTG
GGAGGGGGGGAGGAAAGAGGGATAAGTTCTTGACTAAGGAGGTTGGATGC
TCATCTTTGTAGTATTTTGTCTCATATATATATATGTTTCCCACCTCATA
TTGTCCTTCCCCCTCTGCCTCCTTTCCCTCAGCGGAGGAGAGCGATGCGT
GCTGGTACTCTGGATTGAGGCACGACGGGCGGTGTCGAGAGCGGTTTGAT
TTCGCCGATCACGGCGTCTTGTTCCTGTCGCAATATTTGGCCATCCAGAC
ATTCGAAGTGCTGGCAGTGCTCAGAGAGGTCAGGAAGTAGAGAGGAAGGG
AGGGAGGGAGGAAGGAAGGGAGGAAGGAAGGAAGAAGGTGAGCGCCAGCG
ATTTAGGAAAAAGGCTGTCAATGTGTACCTACACTCAAAATTGTCCCCTC
CGTTTCCCATCCTTTCAAACAGGCCACATCTCTCCCCCATCTCCTCTTAT
GCATTACCACGGCCTGTCTTATCTCCCTCATTTCTCTCGTCGGATTCTAC
GACACGGTCAGCTTCTTCCACACGCGGTTGGAGAGTGTGGTGGGCGTTGT
GTTGTGTAAGTTGAGGAGGGAGGGAGATTGTGTTGTTTAAGTTGAGGAGG
GAGGGAGATTGTGTTGTGCAAGTTGAGGAGGAAGGGAAAGATATTAGGCA
GAGAAAGAGGAGGAATGGAGGGAGGATTGCTTTCTAGATCAATCCCCTCG
GTTTTGCTTGATTGCTTCGTTGGCGCATCGATCCCCCATTCCTAAGTTAT
CGCCATCCAACACGCACCTACAGCCTTCCTCACGGTCCAGCTACCCCTCA
TGCTCATCGCCTCGGGTCGGCTCTCCCACCACCGGTACCTCCGCATCAGC
CACTACATCAAAGTTTAACTCTGATGCAATCAAATTCTTGAACAAAACAT
ACAGGGTTCGAAATGAGTTACTGAATTGCACTTATCGAGACTCCGGTAAA
GAGGAGGAAAAGGGTTTCTAAAGAGAGGCAAAATCCAACTTGTAAAATCA
A back to topCoding sequence (CDS) from alignment at chr7:284590..286890- >NO07G00860.3 ID=NO07G00860.3|Name=NO07G00860.3|organism=Nannochloropsis oceanica|type=CDS|length=867bp|location=Sequence derived from alignment at chr7:284590..286890- (Nannochloropsis oceanica)
ATGGCCGGATCACCTGCCACAGGAGATGCTGCTGTCGTTCACTACCGCAC
GAAGAAACAAGCCGCATCGTCCTCACGGTCCCCATCTCGAGACGGTATGC
AGACCCGCAGCAGCGCCAAGGCCACAAAACGGGAAGAGAACCACGCCCAC
ACCCTCATCGACGAAGAAAATGAACTTAATAGACCCACCTCTCCCGTGGC
GATCTCGGGCCTGTATCTCTTCATTCTCGAATTTCTCACGATCGGTCTCG
TCCTCTCGAAAGCACTGCATACCAATGCCGGCAAGAAATTCGTTCGCGTT
GCCCGAGAAGGCTGCGACTTGGCCTGGGCTGACATGGAGGGAGACCACTC
CACCATTGCCTGTTGCTCCCACACTCCCTCCCTCCCTTCCTCACCCTCCC
TTGGAAACGATGAGAGATGGGATGCGGCGTTGTGTGCTGCTGCTACTTCT
GCGGGGACCAAGCGGTTGACAAGTTCCCTTGCTGCCCTTCTTCCCTTCCT
CACCTGGGGGTTGAATTGCCTGTTTTTTGCAGCGACGTCATGGTGGAGGA
GAAGGAGGAGGGGGGGAAGGGAGGGCTGGGAGGAGGAAGAGAAGGCGGGA
AGAGTGTGGATGGGACAATATAGACGGTTAGGGTTATATGCATTCGTGAT
CATGTTTCGGACGGGCGTGTTGTTGATGTGCTTGAATCGAGTGCAGGCAT
GGGTGCAAGCGGAGGAGAGCGATGCGTGCTGGTACTCTGGATTGAGGCAC
GACGGGCGGTGTCGAGAGCGGTTTGATTTCGCCGATCACGGCGTCTTGTT
CCTGTCGCAATATTTGGCCATCCAGACATTCGAAGTGCTGGCAGTGCTCA
GAGAGGTCAGGAAGTAG back to top
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