|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:285008..286890 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G00860.6 vs.
Match: EWM27345.1 (hypothetical protein Naga_100226g10 [Nannochloropsis gaditana]) HSP 1 Score: 223.0 bits (567), Expect = 1.100e-54 Identity = 128/213 (60.09%), Postives = 141/213 (66.20%), Query Frame = 0
Query: 50 HTLIDEENELNRPTSPVAISGLYLFILEFLTIGLVLSKALHTNAGKKFVRVAREGCDLAWADMEGDHSTIACCSHTPSLPSSPS------LGND-------ERWDAALCAAATSAGTKRLTSSLAALLPFLTWGLNCLFFAATSWWRRRRRGGR----EGWEEEEKAGR-----VWMGQYRRLGLYAFVIMFRTGVLLMCLNRVQAWVQGEEG 241
H +EE L+RP+SPVAISG YLF LE LTI LV SKALH NAGKK+VRV + GC +AWADM GDHST+ACC SLPSS + LG D + W LCAAATS TK LTS LA +LPF+TW LNCLF A WW GGR G +EE K GR +W GQ RRLGLYA VIMFRT VLLM LNRVQAWVQ EEG
Sbjct: 27 HPATEEEGTLDRPSSPVAISGFYLFTLELLTIALVFSKALHHNAGKKYVRVVQPGCHVAWADMNGDHSTVACC----SLPSSSTTFLSFLLGGDDPPSEGQDGWKNPLCAAATSPRTKHLTSGLALVLPFVTWFLNCLFSAVAGWW---GEGGRTEKGRGKDEEGKEGRRRREAIWTGQRRRLGLYAAVIMFRTAVLLMLLNRVQAWVQAEEG 232
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G00860.6 ID=NO07G00860.6|Name=NO07G00860.6|organism=Nannochloropsis oceanica|type=mRNA|length=1428bp TTCAATACCAGTACTAGACCAGGCAGCCTTGACGCAAAGTTTGAGGTACC AGTTTGAGAGCCTCTCCCCTACTTCCAGAGTGCATTTAATGTCACTTTAC GGCCAAATTATTGCCATACCAAATATGGGACACTAAATTGTCCGACCAAA CTTCCATCCTCCGATTTGTGGCGCAGACGGTTGGCGAAACAAAAAATACG AGGAGCCCGAGTGTGCCTTACAGTAACCCAACATCAATCACCACGGCATT CTACAGTCCATGGCCGGATCACCTGCCACAGGAGATGCTGCTGTCGTTCA CTACCGCACGAAGAAACAAGCCGCATCGTCCTCACGGTCCCCATCTCGAG ACGGTATGCAGACCCGCAGCAGCGCCAAGGCCACAAAACGGGAAGAGAAC CACGCCCACACCCTCATCGACGAAGAAAATGAACTTAATAGACCCACCTC TCCCGTGGCGATCTCGGGCCTGTATCTCTTCATTCTCGAATTTCTCACGA TCGGTCTCGTCCTCTCGAAAGCACTGCATACCAATGCCGGCAAGAAATTC GTTCGCGTTGCCCGAGAAGGCTGCGACTTGGCCTGGGCTGACATGGAGGG AGACCACTCCACCATTGCCTGTTGCTCCCACACTCCCTCCCTCCCTTCCT CACCCTCCCTTGGAAACGATGAGAGATGGGATGCGGCGTTGTGTGCTGCT GCTACTTCTGCGGGGACCAAGCGGTTGACAAGTTCCCTTGCTGCCCTTCT TCCCTTCCTCACCTGGGGGTTGAATTGCCTGTTTTTTGCAGCGACGTCAT GGTGGAGGAGAAGGAGGAGGGGGGGAAGGGAGGGCTGGGAGGAGGAAGAG AAGGCGGGAAGAGTGTGGATGGGACAATATAGACGGTTAGGGTTATATGC ATTCGTGATCATGTTTCGGACGGGCGTGTTGTTGATGTGCTTGAATCGAG TGCAGGCATGGGTGCAAGGTGAGGAGGGGAAGGAAAGTGGGAGGGGGGGA GGAAAGAGGGATAAGTTCTTGACTAAGGAGGTTGGATGCTCATCTTTGTA GTATTTTGTCTCATATATATATATGTTTCCCACCTCATATTGTCCTTCCC CCTCTGCCTCCTTTCCCTCAGCGGAGGAGAGCGATGCGTGCTGGTACTCT GGATTGAGGCACGACGGGCGGTGTCGAGAGCGGTTTGATTTCGCCGATCA CGGCGTCTTGTTCCTGTCGCAATATTTGGCCATCCAGACATTCGAAGTGC TGGCAGTGCTCAGAGAGGCCACATCTCTCCCCCATCTCCTCTTATGCATT ACCACGGCCTGTCTTATCTCCCTCATTTCTCTCGTCGGATTCTACGACAC GGTCAGCTTCTTCCACACGCGGTTGGAGAGTGTGGTGGGCGTTGTGTTGT GTAAGTTGAGGAGGGAGGGAGATTGTGT back to topprotein sequence of NO07G00860.6 >NO07G00860.6-protein ID=NO07G00860.6-protein|Name=NO07G00860.6|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp MAGSPATGDAAVVHYRTKKQAASSSRSPSRDGMQTRSSAKATKREENHAH TLIDEENELNRPTSPVAISGLYLFILEFLTIGLVLSKALHTNAGKKFVRV AREGCDLAWADMEGDHSTIACCSHTPSLPSSPSLGNDERWDAALCAAATS AGTKRLTSSLAALLPFLTWGLNCLFFAATSWWRRRRRGGREGWEEEEKAG RVWMGQYRRLGLYAFVIMFRTGVLLMCLNRVQAWVQGEEGKESGRGGGKR DKFLTKEVGCSSL* back to topmRNA from alignment at chr7:285008..286890- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G00860.6 ID=NO07G00860.6|Name=NO07G00860.6|organism=Nannochloropsis oceanica|type=mRNA|length=1883bp|location=Sequence derived from alignment at chr7:285008..286890- (Nannochloropsis oceanica) TTCAATACCAGTACTAGACCAGGCAGCCTTGACGCAAAGTTTGAGGTACC
AGTTTGAGAGCCTCTCCCCTACTTCCAGAGTGCATTTAATGTCACTTTAC
GGCCAAATTATTGCCATACCAAATATGGGACACTAAATTGTCCGACCAAA
CTTCCATCCTCCGATTTGTGGCGCAGACGGTTGGCGAAACAAAAAATACG
AGGAGCCCGAGTGTGCCTTACAGTAACCCAACATCAATCACCACGGCATT
CTACAGTCCATGGCCGGATCACCTGCCACAGGAGATGCTGCTGTCGTTCA
CTACCGCACGAAGAAACAAGCCGCATCGTCCTCACGGTCCCCATCTCGAG
GTAAGCAGGCATGCGTAGCCTCCCCCCCCACCTCTTGTATAAGACCAGGT
GGAACATGAACACTTTCATCCTTTACTCGAATGCCTGGGATTAATGCCAC
GCATGCCTCAACGCGGAGATTGATTACATACGATTCTTCAGCAAAGCTTA
AGAATGTCAAATAGTGCCTCTTTTGATCACTTCATATCTGCATCCTCCCT
TGCCTGCGCTCCCTCCGCATACCAGACGGTATGCAGACCCGCAGCAGCGC
CAAGGCCACAAAACGGGAAGAGAACCACGCCCACACCCTCATCGACGAAG
AAAATGAACTTAATAGACCCACCTCTCCCGTGGCGATCTCGGTACGGTTT
TCGAAGAGGGGGGGGGGGGAGCTCGCCTGCCCTGTGTCTTCCATACTCAC
CCTCCCTCCCTTCGTCCCGTTCCTCAGGGCCTGTATCTCTTCATTCTCGA
ATTTCTCACGATCGGTCTCGTCCTCTCGAAAGCACTGCATACCAATGCCG
GCAAGAAATTCGTTCGCGTTGCCCGAGAAGGCTGCGACTTGGCCTGGGCT
GACATGGAGGGAGACCACTCCACCATTGCCTGTTGCTCCCACACTCCCTC
CCTCCCTTCCTCACCCTCCCTTGGAAACGATGAGAGATGGGATGCGGCGT
TGTGTGCTGCTGCTACTTCTGCGGGGACCAAGCGGTTGACAAGTTCCCTT
GCTGCCCTTCTTCCCTTCCTCACCTGGGGGTTGAATTGCCTGTTTTTTGC
AGCGACGTCATGGTGGAGGAGAAGGAGGAGGGGGGGAAGGGAGGGCTGGG
AGGAGGAAGAGAAGGCGGGAAGAGTGTGGATGGGACAATATAGACGGTTA
GGGTTATATGCATTCGTGATCATGTTTCGGACGGGCGTGTTGTTGATGTG
CTTGAATCGAGTGCAGGCATGGGTGCAAGGTGAGGAGGGGAAGGAAAGTG
GGAGGGGGGGAGGAAAGAGGGATAAGTTCTTGACTAAGGAGGTTGGATGC
TCATCTTTGTAGTATTTTGTCTCATATATATATATGTTTCCCACCTCATA
TTGTCCTTCCCCCTCTGCCTCCTTTCCCTCAGCGGAGGAGAGCGATGCGT
GCTGGTACTCTGGATTGAGGCACGACGGGCGGTGTCGAGAGCGGTTTGAT
TTCGCCGATCACGGCGTCTTGTTCCTGTCGCAATATTTGGCCATCCAGAC
ATTCGAAGTGCTGGCAGTGCTCAGAGAGGTCAGGAAGTAGAGAGGAAGGG
AGGGAGGGAGGAAGGAAGGGAGGAAGGAAGGAAGAAGGTGAGCGCCAGCG
ATTTAGGAAAAAGGCTGTCAATGTGTACCTACACTCAAAATTGTCCCCTC
CGTTTCCCATCCTTTCAAACAGGCCACATCTCTCCCCCATCTCCTCTTAT
GCATTACCACGGCCTGTCTTATCTCCCTCATTTCTCTCGTCGGATTCTAC
GACACGGTCAGCTTCTTCCACACGCGGTTGGAGAGTGTGGTGGGCGTTGT
GTTGTGTAAGTTGAGGAGGGAGGGAGATTGTGT back to topCoding sequence (CDS) from alignment at chr7:285008..286890- >NO07G00860.6 ID=NO07G00860.6|Name=NO07G00860.6|organism=Nannochloropsis oceanica|type=CDS|length=792bp|location=Sequence derived from alignment at chr7:285008..286890- (Nannochloropsis oceanica) ATGGCCGGATCACCTGCCACAGGAGATGCTGCTGTCGTTCACTACCGCAC GAAGAAACAAGCCGCATCGTCCTCACGGTCCCCATCTCGAGACGGTATGC AGACCCGCAGCAGCGCCAAGGCCACAAAACGGGAAGAGAACCACGCCCAC ACCCTCATCGACGAAGAAAATGAACTTAATAGACCCACCTCTCCCGTGGC GATCTCGGGCCTGTATCTCTTCATTCTCGAATTTCTCACGATCGGTCTCG TCCTCTCGAAAGCACTGCATACCAATGCCGGCAAGAAATTCGTTCGCGTT GCCCGAGAAGGCTGCGACTTGGCCTGGGCTGACATGGAGGGAGACCACTC CACCATTGCCTGTTGCTCCCACACTCCCTCCCTCCCTTCCTCACCCTCCC TTGGAAACGATGAGAGATGGGATGCGGCGTTGTGTGCTGCTGCTACTTCT GCGGGGACCAAGCGGTTGACAAGTTCCCTTGCTGCCCTTCTTCCCTTCCT CACCTGGGGGTTGAATTGCCTGTTTTTTGCAGCGACGTCATGGTGGAGGA GAAGGAGGAGGGGGGGAAGGGAGGGCTGGGAGGAGGAAGAGAAGGCGGGA AGAGTGTGGATGGGACAATATAGACGGTTAGGGTTATATGCATTCGTGAT CATGTTTCGGACGGGCGTGTTGTTGATGTGCTTGAATCGAGTGCAGGCAT GGGTGCAAGGTGAGGAGGGGAAGGAAAGTGGGAGGGGGGGAGGAAAGAGG GATAAGTTCTTGACTAAGGAGGTTGGATGCTCATCTTTGTAG back to top
|