|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr7 | genome | chr7:285008..286890 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G00860.7 vs.
Match: EWM27345.1 (hypothetical protein Naga_100226g10 [Nannochloropsis gaditana]) HSP 1 Score: 311.2 bits (796), Expect = 2.900e-81 Identity = 168/260 (64.62%), Postives = 184/260 (70.77%), Query Frame = 0
Query: 18 HTLIDEENELNRPTSPVAISGLYLFILEFLTIGLVLSKALHTNAGKKFVRVAREGCDLAWADMEGDHSTIACCSHTPSLPSSPS------LGNDER-------WDAALCAAATSAGTKRLTSSLAALLPFLTWGLNCLFFAATSWWRRRRRGGR----EGWEEEEKAGR-----VWMGQYRRLGLYAFVIMFRTGVLLMCLNRVQAWVQAEESDACWYSGLRHDGRCRERFDFADHGVLFLSQYLAIQTFEVLAVLREVR 256
H +EE L+RP+SPVAISG YLF LE LTI LV SKALH NAGKK+VRV + GC +AWADM GDHST+ACCS LPSS + LG D+ W LCAAATS TK LTS LA +LPF+TW LNCLF A WW GGR G +EE K GR +W GQ RRLGLYA VIMFRT VLLM LNRVQAWVQAEE D CWYS LRHDGRCRERFDFADHGVLF+SQYLAIQTFE +A+LRE R
Sbjct: 27 HPATEEEGTLDRPSSPVAISGFYLFTLELLTIALVFSKALHHNAGKKYVRVVQPGCHVAWADMNGDHSTVACCS----LPSSSTTFLSFLLGGDDPPSEGQDGWKNPLCAAATSPRTKHLTSGLALVLPFVTWFLNCLFSAVAGWW---GEGGRTEKGRGKDEEGKEGRRRREAIWTGQRRRLGLYAAVIMFRTAVLLMLLNRVQAWVQAEEGDTCWYSALRHDGRCRERFDFADHGVLFISQYLAIQTFETVAILREAR 279
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G00860.7 ID=NO07G00860.7|Name=NO07G00860.7|organism=Nannochloropsis oceanica|type=mRNA|length=1644bp
TTCAATACCAGTACTAGACCAGGCAGCCTTGACGCAAAGTTTGAGGTACC
AGTTTGAGAGCCTCTCCCCTACTTCCAGAGTGCATTTAATGTCACTTTAC
GGCCAAATTATTGCCATACCAAATATGGGACACTAAATTGTCCGACCAAA
CTTCCATCCTCCGATTTGTGGCGCAGACGGTTGGCGAAACAAAAAATACG
AGGAGCCCGAGTGTGCCTTACAGTAACCCAACATCAATCACCACGGCATT
CTACAGTCCATGGCCGGATCACCTGCCACAGGAGATGCTGCTGTCGTTCA
CTACCGCACGAAGAAACAAGCCGCATCGTCCTCACGGTCCCCATCTCGAG
GTAAGCAGGCATGCGTAGCCTCCCCCCCCACCTCTTGTATAAGACCAGGT
GGAACATGAACACTTTCATCCTTTACTCGAATGCCTGGGATTAATGCCAC
GCATGCCTCAACGCGGAGATTGATTACATACGATTCTTCAGCAAAGCTTA
AGAATGTCAAATAGTGCCTCTTTTGATCACTTCATATCTGCATCCTCCCT
TGCCTGCGCTCCCTCCGCATACCAGACGGTATGCAGACCCGCAGCAGCGC
CAAGGCCACAAAACGGGAAGAGAACCACGCCCACACCCTCATCGACGAAG
AAAATGAACTTAATAGACCCACCTCTCCCGTGGCGATCTCGGGCCTGTAT
CTCTTCATTCTCGAATTTCTCACGATCGGTCTCGTCCTCTCGAAAGCACT
GCATACCAATGCCGGCAAGAAATTCGTTCGCGTTGCCCGAGAAGGCTGCG
ACTTGGCCTGGGCTGACATGGAGGGAGACCACTCCACCATTGCCTGTTGC
TCCCACACTCCCTCCCTCCCTTCCTCACCCTCCCTTGGAAACGATGAGAG
ATGGGATGCGGCGTTGTGTGCTGCTGCTACTTCTGCGGGGACCAAGCGGT
TGACAAGTTCCCTTGCTGCCCTTCTTCCCTTCCTCACCTGGGGGTTGAAT
TGCCTGTTTTTTGCAGCGACGTCATGGTGGAGGAGAAGGAGGAGGGGGGG
AAGGGAGGGCTGGGAGGAGGAAGAGAAGGCGGGAAGAGTGTGGATGGGAC
AATATAGACGGTTAGGGTTATATGCATTCGTGATCATGTTTCGGACGGGC
GTGTTGTTGATGTGCTTGAATCGAGTGCAGGCATGGGTGCAAGCGGAGGA
GAGCGATGCGTGCTGGTACTCTGGATTGAGGCACGACGGGCGGTGTCGAG
AGCGGTTTGATTTCGCCGATCACGGCGTCTTGTTCCTGTCGCAATATTTG
GCCATCCAGACATTCGAAGTGCTGGCAGTGCTCAGAGAGGTCAGGAAGTA
GAGAGGAAGGGAGGGAGGGAGGAAGGAAGGGAGGAAGGAAGGAAGAAGGT
GAGCGCCAGCGATTTAGGAAAAAGGCTGTCAATGTGTACCTACACTCAAA
ATTGTCCCCTCCGTTTCCCATCCTTTCAAACAGGCCACATCTCTCCCCCA
TCTCCTCTTATGCATTACCACGGCCTGTCTTATCTCCCTCATTTCTCTCG
TCGGATTCTACGACACGGTCAGCTTCTTCCACACGCGGTTGGAGAGTGTG
GTGGGCGTTGTGTTGTGTAAGTTGAGGAGGGAGGGAGATTGTGT back to topprotein sequence of NO07G00860.7 >NO07G00860.7-protein ID=NO07G00860.7-protein|Name=NO07G00860.7|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MQTRSSAKATKREENHAHTLIDEENELNRPTSPVAISGLYLFILEFLTIG
LVLSKALHTNAGKKFVRVAREGCDLAWADMEGDHSTIACCSHTPSLPSSP
SLGNDERWDAALCAAATSAGTKRLTSSLAALLPFLTWGLNCLFFAATSWW
RRRRRGGREGWEEEEKAGRVWMGQYRRLGLYAFVIMFRTGVLLMCLNRVQ
AWVQAEESDACWYSGLRHDGRCRERFDFADHGVLFLSQYLAIQTFEVLAV
LREVRK* back to topmRNA from alignment at chr7:285008..286890- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G00860.7 ID=NO07G00860.7|Name=NO07G00860.7|organism=Nannochloropsis oceanica|type=mRNA|length=1883bp|location=Sequence derived from alignment at chr7:285008..286890- (Nannochloropsis oceanica)
TTCAATACCAGTACTAGACCAGGCAGCCTTGACGCAAAGTTTGAGGTACC
AGTTTGAGAGCCTCTCCCCTACTTCCAGAGTGCATTTAATGTCACTTTAC
GGCCAAATTATTGCCATACCAAATATGGGACACTAAATTGTCCGACCAAA
CTTCCATCCTCCGATTTGTGGCGCAGACGGTTGGCGAAACAAAAAATACG
AGGAGCCCGAGTGTGCCTTACAGTAACCCAACATCAATCACCACGGCATT
CTACAGTCCATGGCCGGATCACCTGCCACAGGAGATGCTGCTGTCGTTCA
CTACCGCACGAAGAAACAAGCCGCATCGTCCTCACGGTCCCCATCTCGAG
GTAAGCAGGCATGCGTAGCCTCCCCCCCCACCTCTTGTATAAGACCAGGT
GGAACATGAACACTTTCATCCTTTACTCGAATGCCTGGGATTAATGCCAC
GCATGCCTCAACGCGGAGATTGATTACATACGATTCTTCAGCAAAGCTTA
AGAATGTCAAATAGTGCCTCTTTTGATCACTTCATATCTGCATCCTCCCT
TGCCTGCGCTCCCTCCGCATACCAGACGGTATGCAGACCCGCAGCAGCGC
CAAGGCCACAAAACGGGAAGAGAACCACGCCCACACCCTCATCGACGAAG
AAAATGAACTTAATAGACCCACCTCTCCCGTGGCGATCTCGGTACGGTTT
TCGAAGAGGGGGGGGGGGGAGCTCGCCTGCCCTGTGTCTTCCATACTCAC
CCTCCCTCCCTTCGTCCCGTTCCTCAGGGCCTGTATCTCTTCATTCTCGA
ATTTCTCACGATCGGTCTCGTCCTCTCGAAAGCACTGCATACCAATGCCG
GCAAGAAATTCGTTCGCGTTGCCCGAGAAGGCTGCGACTTGGCCTGGGCT
GACATGGAGGGAGACCACTCCACCATTGCCTGTTGCTCCCACACTCCCTC
CCTCCCTTCCTCACCCTCCCTTGGAAACGATGAGAGATGGGATGCGGCGT
TGTGTGCTGCTGCTACTTCTGCGGGGACCAAGCGGTTGACAAGTTCCCTT
GCTGCCCTTCTTCCCTTCCTCACCTGGGGGTTGAATTGCCTGTTTTTTGC
AGCGACGTCATGGTGGAGGAGAAGGAGGAGGGGGGGAAGGGAGGGCTGGG
AGGAGGAAGAGAAGGCGGGAAGAGTGTGGATGGGACAATATAGACGGTTA
GGGTTATATGCATTCGTGATCATGTTTCGGACGGGCGTGTTGTTGATGTG
CTTGAATCGAGTGCAGGCATGGGTGCAAGGTGAGGAGGGGAAGGAAAGTG
GGAGGGGGGGAGGAAAGAGGGATAAGTTCTTGACTAAGGAGGTTGGATGC
TCATCTTTGTAGTATTTTGTCTCATATATATATATGTTTCCCACCTCATA
TTGTCCTTCCCCCTCTGCCTCCTTTCCCTCAGCGGAGGAGAGCGATGCGT
GCTGGTACTCTGGATTGAGGCACGACGGGCGGTGTCGAGAGCGGTTTGAT
TTCGCCGATCACGGCGTCTTGTTCCTGTCGCAATATTTGGCCATCCAGAC
ATTCGAAGTGCTGGCAGTGCTCAGAGAGGTCAGGAAGTAGAGAGGAAGGG
AGGGAGGGAGGAAGGAAGGGAGGAAGGAAGGAAGAAGGTGAGCGCCAGCG
ATTTAGGAAAAAGGCTGTCAATGTGTACCTACACTCAAAATTGTCCCCTC
CGTTTCCCATCCTTTCAAACAGGCCACATCTCTCCCCCATCTCCTCTTAT
GCATTACCACGGCCTGTCTTATCTCCCTCATTTCTCTCGTCGGATTCTAC
GACACGGTCAGCTTCTTCCACACGCGGTTGGAGAGTGTGGTGGGCGTTGT
GTTGTGTAAGTTGAGGAGGGAGGGAGATTGTGT back to topCoding sequence (CDS) from alignment at chr7:285008..286890- >NO07G00860.7 ID=NO07G00860.7|Name=NO07G00860.7|organism=Nannochloropsis oceanica|type=CDS|length=771bp|location=Sequence derived from alignment at chr7:285008..286890- (Nannochloropsis oceanica)
ATGCAGACCCGCAGCAGCGCCAAGGCCACAAAACGGGAAGAGAACCACGC
CCACACCCTCATCGACGAAGAAAATGAACTTAATAGACCCACCTCTCCCG
TGGCGATCTCGGGCCTGTATCTCTTCATTCTCGAATTTCTCACGATCGGT
CTCGTCCTCTCGAAAGCACTGCATACCAATGCCGGCAAGAAATTCGTTCG
CGTTGCCCGAGAAGGCTGCGACTTGGCCTGGGCTGACATGGAGGGAGACC
ACTCCACCATTGCCTGTTGCTCCCACACTCCCTCCCTCCCTTCCTCACCC
TCCCTTGGAAACGATGAGAGATGGGATGCGGCGTTGTGTGCTGCTGCTAC
TTCTGCGGGGACCAAGCGGTTGACAAGTTCCCTTGCTGCCCTTCTTCCCT
TCCTCACCTGGGGGTTGAATTGCCTGTTTTTTGCAGCGACGTCATGGTGG
AGGAGAAGGAGGAGGGGGGGAAGGGAGGGCTGGGAGGAGGAAGAGAAGGC
GGGAAGAGTGTGGATGGGACAATATAGACGGTTAGGGTTATATGCATTCG
TGATCATGTTTCGGACGGGCGTGTTGTTGATGTGCTTGAATCGAGTGCAG
GCATGGGTGCAAGCGGAGGAGAGCGATGCGTGCTGGTACTCTGGATTGAG
GCACGACGGGCGGTGTCGAGAGCGGTTTGATTTCGCCGATCACGGCGTCT
TGTTCCTGTCGCAATATTTGGCCATCCAGACATTCGAAGTGCTGGCAGTG
CTCAGAGAGGTCAGGAAGTAG back to top
|