NO01G05790, NO01G05790 (gene) Nannochloropsis oceanica

Overview
NameNO01G05790
Unique NameNO01G05790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2463
Alignment locationchr1:1618000..1620636 +

Link to JBrowse

Properties
Property NameValue
DescriptionCeramidase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1618000..1620636 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016811hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
GO:0016811hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006672ceramide metabolic process
GO:0006672ceramide metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR008901Ceramidase
Homology
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BLAST of NO01G05790 vs. NCBI_GenBank
Match: EWM22813.1 (Ceramidase [Nannochloropsis gaditana])

HSP 1 Score: 246.9 bits (629), Expect = 1.200e-61
Identity = 149/329 (45.29%), Postives = 173/329 (52.58%), Query Frame = 0 
Query:   46 KSQWMSGLALLASGLLVWSLALNVVYGNVFYDSLFTFLGLLLLSSALCLRVLHMRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPRRLYPANGGKKNDGEVVGQRTVEDTRTEALEAGKAASLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVRTKEKHYLPVLGGETQALSVILLGLLLVTIAAVIWETSEQLCPLPGWAWLRFLRLHSLWHLSVGYGVYLLLQAAALLSGPCLYGKWSTFDNRHTRYSWVNTFFPRVVYMNCVCQADGGEGGREEGEEEDELWVVSMRCGLERK 375
            KSQ MS LALLASGLL+WSL LN VYGNVFYD+LFT LGL LL+SAL                                                               P  L P                      EA EAGK+   +                                  A+R KE+HY+PVLGGETQALSVILLGLLLV  AA+IWETSEQLCPLP W WLR+LRLH+LWHLS+GYGVYLLLQA+ALLS P L+GK + FDNRH+R  W+NTFFPRVVY+NC CQ+ G E G  EG+ + E WV+ + CG E +
Sbjct:  144 KSQCMSVLALLASGLLIWSLVLNAVYGNVFYDTLFTVLGLFLLASAL--------------------------------------------------------------TPACLPP----------------------EATEAGKSGEPE--------------GGSIHGGGIPRPPPMHGWLLALRVKERHYMPVLGGETQALSVILLGLLLVLFAAIIWETSEQLCPLPHWGWLRYLRLHALWHLSIGYGVYLLLQASALLSAPSLFGKRAMFDNRHSRRIWINTFFPRVVYLNCTCQS-GRESGGREGKGDREWWVICVECGREER 373
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BLAST of NO01G05790 vs. NCBI_GenBank
Match: XP_005854473.1 (hypothetical protein NGA_0239300 [Nannochloropsis gaditana CCMP526] >EKU21890.1 hypothetical protein NGA_0239300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 80.5 bits (197), Expect = 1.500e-11
Identity = 43/56 (76.79%), Postives = 46/56 (82.14%), Query Frame = 0 
Query:   46 KSQWMSGLALLASGLLVWSLALNVVYGNVFYDSLFTFLGLLLLSSALCLRVLHMRR 102
            KSQ MS LALLASGLL+WSL LN VYGNVFYD+LFT LGL LL+SAL LR  H RR
Sbjct:  144 KSQCMSVLALLASGLLIWSLVLNAVYGNVFYDTLFTVLGLFLLASALTLRAFHRRR 199
The following BLAST results are available for this feature:
BLAST of NO01G05790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22813.11.200e-6145.29Ceramidase [Nannochloropsis gaditana][more]
XP_005854473.11.500e-1176.79hypothetical protein NGA_0239300 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL001nonsL001Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR059ngnoR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G05790.1NO01G05790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G05790.2NO01G05790.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G05790.3NO01G05790.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G05790.4NO01G05790.4Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G05790.5NO01G05790.5Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G05790.6NO01G05790.6Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G05790.7NO01G05790.7Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G05790.8NO01G05790.8Nannochloropsis oceanica (N. oceanica IMET1)mRNA


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G05790.1NO01G05790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G05790.2NO01G05790.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G05790.3NO01G05790.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G05790.4NO01G05790.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G05790.5NO01G05790.5-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G05790.6NO01G05790.6-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G05790.7NO01G05790.7-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G05790.8NO01G05790.8-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G05790 ID=NO01G05790|Name=NO01G05790|organism=Nannochloropsis oceanica|type=gene|length=2463bp
GTATAAGCCGTCCAGGTTTCGTGTCCAAACATACAAATAGTCGACCTTGC
ACACCTCTTCTGGTTTCGGTCATATGTTTAATACACTGTCTGTGTCACTC
TCATATGTTATTTCAAGATACACAGGGTGCACAATCGATCCTTCCCACGT
CCCACACCAGTAAGCATACCTAGCCTTCATCTCAAGAAGGAATAAAGGAA
TAATATTAACTCAATCAACGCGGAACGATGCTTGATGCCGAGGAAGCCTG
GCAGGTGTGTAAGCGTGTGTGCGACTACCTCCTTCCCTTACAACTTTCCC
CACCCCTTTGCCTTCTCCTCCCTGCTCATTCACAACTCTCGGAACAACCT
TCCCTCCACGCTTGCATTATTAACGCTCGTAGACACCCGTTCGCCATTTT
TGTGAATCTGTCCACGATCCGACATCTCCCGAGATTTACAGTGCATTTTC
CTCCTTGGGGATTACGGTCTTCGCCTGCCTCTGCCTCTTCACTGGTCAGC
ACGGTAATGTCCTCGTCAAGATCTGTGCAGCAGTCCTCGCATGGTGTGGA
ATCGGCTCCTTCGGTTTTCATTGGACGCTTGCCGAGGCCTGGTCTTTTCT
TGATACCTTTCCAATGACGGTTGCCGCAGTGTTGGGCATGTACCTGTGCT
GGGGAGTGATTTTGGACGAGGTGTTTTTCTTCCTCCACTTTAGACCTTCG
TCACAGTCCTTAGACGTGAGACAAGGCAGCATTACAGACAGCTGCTCAGT
AGGCTCGTCACCATCTGGTCCTCCACATCTCTCATCACTACTTCGAAGGT
ACGTGCTTGACCAATGTATGCTGAAAATGTCCGACCCACCCAACCGCTCC
CTGCTCGCCCTCTCCCCCTCCCTATTCATCTCGTTCCCCGTACTCCCTCT
CTACTCATCATCTCTCTCTTCTCCTCCCCTCCGTCCCATAACTGTAGCAA
GTCCCAATGGATGAGCGGCCTGGCCCTCTTGGCCAGTGGCTTGTTGGTGT
GGAGCCTGGCCTTGAATGTTGTGTACGGGAATGTCTTTTACGACTCCCTC
TTTACCTTTTTGGGTCTGCTTCTCCTATCCTCGGCCCTCTGCCTCCGAGT
CTTGCACATGAGGCGAAGACGCTTGGAGAAAGAGGAAGGAGGCATGCCAC
AAAGGACCGGCCTGTCAAGGCGCCGGCGGGTGGTGTCGGTGCTGGCGTGT
GCGGAGGGTTGTGAGGAGGAAAGGAAGGAGCAGGAGGAAGAAGGAAAGGT
GGAAGGGGGGGGGATCTTGATGCTCGACCCTCGGCGATTGTACCCGGCAA
ATGGCGGCAAGAAAAACGACGGAGAGGTTGTAGGGCAGAGAACCGTGGAG
GACACGCGGACTGAGGCGTTGGAGGCGGGCAAGGCGGCATCCCTGCAGAG
GGCCTTGCTTACCCCTCCCTCACACCATGGCCACCACCACCACCTCAACC
ACCACCATCATCATCATCATCATCATCATCACCATCACAGCTGGCTCCTA
GCAGTCAGGACGAAGGAAAAGCACTACCTACCCGTATTGGGGGGAGAAAC
GCAGgtaggtagattctcgtcttcgccggtcgacagagagagagggaatg
gacgcgccctcgagtgtgcctcgtacggatgtcgctgctatcttctgctg
ccctttttctccttacaaatacattccgttcattctttccttctctagGC
CCTATCAGTCATCCTCCTCGGCCTCCTCCTTGTCACAATTGCCGCCGTTA
TCTGGGAGACAAGCGAGCAGCTTTGCCCGTTACCCGGGTGGGCCTGGCTG
CGATTCCTTCGCCTTCATTCATTGTGGCATCTCAGCGTAGGCTATGGCGT
CTATTTGCTCCTCCAGgtcagcccaagaggacgatctccacccctcctcc
ctgtaatttctctcttcctctccacctttgataccgacctacatcctttc
ctaaatttcactcactcactcactccctcctcccctctctccctcctccc
ctctctcccgtgccccgttcagGCCGCAGCCCTTCTCTCTGGACCCTGTC
TTTATGGGAAATGGTCCACGTTCGACAACCGGCACACGCGCTATTCGTGG
GTTAATACTTTCTTTCCCCGCGTTGTGTACATGAATTGTGTGTGTCAGGC
GGATGGCGGGGAGGGAGGGAGGGAGGAAGGGGAGGAAGAGGATGAGCTGT
GGGTGGTGTCCATGAGGTGTGGACTGGAGAGAAAGGTTGGAAGAGGGTGG
GGGGGAGGGGGGAAGCGGTGGGAGATGCCCGTGCAAAAGAGAGGAGAAGG
AAGAGGAGGAGGCGATGGTTGGAGGGGACGTTGCGACAGCGCCAGTAGCA
CCACCACCAGCAATACGGAGTGTGAGACGGCGTGGGCCTCTGCTTCTTCT
TCCTCCTTACCCTCAGTGTCCTCGTCGTCGGTGGAAGAGGGGAAGAATGA
TTCGAAGATTTGA
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protein sequence of NO01G05790.1

>NO01G05790.1-protein ID=NO01G05790.1-protein|Name=NO01G05790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=605bp
MLDAEEAWQTPVRHFCESVHDPTSPEIYSAFSSLGITVFACLCLFTGQHG
NVLVKICAAVLAWCGIGSFGFHWTLAEAWSFLDTFPMTVAAVLGMYLCWG
VILDEVFFFLHFRPSSQSLDVRQGSITDSCSVGSSPSGPPHLSSLLRSKS
QWMSGLALLASGLLVWSLALNVVYGNVFYDSLFTFLGLLLLSSALCLRVL
HMRRRRLEKEEGGMPQRTGLSRRRRVVSVLACAEGCEEERKEQEEEGKVE
GGGILMLDPRRLYPANGGKKNDGEVVGQRTVEDTRTEALEAGKAASLQRA
LLTPPSHHGHHHHLNHHHHHHHHHHHHHSWLLAVRTKEKHYLPVLGGETQ
ALSVILLGLLLVTIAAVIWETSEQLCPLPGWAWLRFLRLHSLWHLSVGYG
VYLLLQVSPRGRSPPLLPVISLFLSTFDTDLHPFLNFTHSLTPSSPLSLL
PSLPCPVQAAALLSGPCLYGKWSTFDNRHTRYSWVNTFFPRVVYMNCVCQ
ADGGEGGREEGEEEDELWVVSMRCGLERKVGRGWGGGGKRWEMPVQKRGE
GRGGGDGWRGRCDSASSTTTSNTECETAWASASSSSLPSVSSSSVEEGKN
DSKI*
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protein sequence of NO01G05790.2

>NO01G05790.2-protein ID=NO01G05790.2-protein|Name=NO01G05790.2|organism=Nannochloropsis oceanica|type=polypeptide|length=467bp
MTVAAVLGMYLCWGVILDEVFFFLHFRPSSQSLDVRQGSITDSCSVGSSP
SGPPHLSSLLRSKSQWMSGLALLASGLLVWSLALNVVYGNVFYDSLFTFL
GLLLLSSALCLRVLHMRRRRLEKEEGGMPQRTGLSRRRRVVSVLACAEGC
EEERKEQEEEGKVEGGGILMLDPRRLYPANGGKKNDGEVVGQRTVEDTRT
EALEAGKAASLQRALLTPPSHHGHHHHLNHHHHHHHHHHHHHSWLLAVRT
KEKHYLPVLGGETQALSVILLGLLLVTIAAVIWETSEQLCPLPGWAWLRF
LRLHSLWHLSVGYGVYLLLQAAALLSGPCLYGKWSTFDNRHTRYSWVNTF
FPRVVYMNCVCQADGGEGGREEGEEEDELWVVSMRCGLERKVGRGWGGGG
KRWEMPVQKRGEGRGGGDGWRGRCDSASSTTTSNTECETAWASASSSSLP
SVSSSSVEEGKNDSKI*
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protein sequence of NO01G05790.3

>NO01G05790.3-protein ID=NO01G05790.3-protein|Name=NO01G05790.3|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp
MYAENVRPTQPLPARPLPLPIHLVPRTPSLLIISLFSSPPSHNCSKSQWM
SGLALLASGLLVWSLALNVVYGNVFYDSLFTFLGLLLLSSALCLRVLHMR
RRRLEKEEGGMPQRTGLSRRRRVVSVLACAEGCEEERKEQEEEGKVEGGG
ILMLDPRRLYPANGGKKNDGEVVGQRTVEDTRTEALEAGKAASLQRALLT
PPSHHGHHHHLNHHHHHHHHHHHHHSWLLAVRTKEKHYLPVLGGETQALS
VILLGLLLVTIAAVIWETSEQLCPLPGWAWLRFLRLHSLWHLSVGYGVYL
LLQAAALLSGPCLYGKWSTFDNRHTRYSWVNTFFPRVVYMNCVCQADGGE
GGREEGEEEDELWVVSMRCGLERKVGRGWGGGGKRWEMPVQKRGEGRGGG
DGWRGRCDSASSTTTSNTECETAWASASSSSLPSVSSSSVEEGKNDSKI*
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protein sequence of NO01G05790.4

>NO01G05790.4-protein ID=NO01G05790.4-protein|Name=NO01G05790.4|organism=Nannochloropsis oceanica|type=polypeptide|length=502bp
MYAENVRPTQPLPARPLPLPIHLVPRTPSLLIISLFSSPPSHNCSKSQWM
SGLALLASGLLVWSLALNVVYGNVFYDSLFTFLGLLLLSSALCLRVLHMR
RRRLEKEEGGMPQRTGLSRRRRVVSVLACAEGCEEERKEQEEEGKVEGGG
ILMLDPRRLYPANGGKKNDGEVVGQRTVEDTRTEALEAGKAASLQRALLT
PPSHHGHHHHLNHHHHHHHHHHHHHSWLLAVRTKEKHYLPVLGGETQALS
VILLGLLLVTIAAVIWETSEQLCPLPGWAWLRFLRLHSLWHLSVGYGVYL
LLQVSPRGRSPPLLPVISLFLSTFDTDLHPFLNFTHSLTPSSPLSLLPSL
PCPVQAAALLSGPCLYGKWSTFDNRHTRYSWVNTFFPRVVYMNCVCQADG
GEGGREEGEEEDELWVVSMRCGLERKVGRGWGGGGKRWEMPVQKRGEGRG
GGDGWRGRCDSASSTTTSNTECETAWASASSSSLPSVSSSSVEEGKNDSK
I*
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protein sequence of NO01G05790.5

>NO01G05790.5-protein ID=NO01G05790.5-protein|Name=NO01G05790.5|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp
MYAENVRPTQPLPARPLPLPIHLVPRTPSLLIISLFSSPPSHNCSKSQWM
SGLALLASGLLVWSLALNVVYGNVFYDSLFTFLGLLLLSSALCLRVLHMR
RRRLEKEEGGMPQRTGLSRRRRVVSVLACAEGCEEERKEQEEEGKVEGGG
ILMLDPRRLYPANGGKKNDGEVVGQRTVEDTRTEALEAGKAASLQRALLT
PPSHHGHHHHLNHHHHHHHHHHHHHSWLLAVRTKEKHYLPVLGGETQALS
VILLGLLLVTIAAVIWETSEQLCPLPGWAWLRFLRLHSLWHLSVGYGVYL
LLQAAALLSGPCLYGKWSTFDNRHTRYSWVNTFFPRVVYMNCVCQADGGE
GGREEGEEEDELWVVSMRCGLERKVGRGWGGGGKRWEMPVQKRGEGRGGG
DGWRGRCDSASSTTTSNTECETAWASASSSSLPSVSSSSVEEGKNDSKI*
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protein sequence of NO01G05790.6

>NO01G05790.6-protein ID=NO01G05790.6-protein|Name=NO01G05790.6|organism=Nannochloropsis oceanica|type=polypeptide|length=519bp
MTVAAVLGMYLCWGVILDEVFFFLHFRPSSQSLDVRQGSITDSCSVGSSP
SGPPHLSSLLRSKSQWMSGLALLASGLLVWSLALNVVYGNVFYDSLFTFL
GLLLLSSALCLRVLHMRRRRLEKEEGGMPQRTGLSRRRRVVSVLACAEGC
EEERKEQEEEGKVEGGGILMLDPRRLYPANGGKKNDGEVVGQRTVEDTRT
EALEAGKAASLQRALLTPPSHHGHHHHLNHHHHHHHHHHHHHSWLLAVRT
KEKHYLPVLGGETQALSVILLGLLLVTIAAVIWETSEQLCPLPGWAWLRF
LRLHSLWHLSVGYGVYLLLQVSPRGRSPPLLPVISLFLSTFDTDLHPFLN
FTHSLTPSSPLSLLPSLPCPVQAAALLSGPCLYGKWSTFDNRHTRYSWVN
TFFPRVVYMNCVCQADGGEGGREEGEEEDELWVVSMRCGLERKVGRGWGG
GGKRWEMPVQKRGEGRGGGDGWRGRCDSASSTTTSNTECETAWASASSSS
LPSVSSSSVEEGKNDSKI*
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protein sequence of NO01G05790.7

>NO01G05790.7-protein ID=NO01G05790.7-protein|Name=NO01G05790.7|organism=Nannochloropsis oceanica|type=polypeptide|length=502bp
MYAENVRPTQPLPARPLPLPIHLVPRTPSLLIISLFSSPPSHNCSKSQWM
SGLALLASGLLVWSLALNVVYGNVFYDSLFTFLGLLLLSSALCLRVLHMR
RRRLEKEEGGMPQRTGLSRRRRVVSVLACAEGCEEERKEQEEEGKVEGGG
ILMLDPRRLYPANGGKKNDGEVVGQRTVEDTRTEALEAGKAASLQRALLT
PPSHHGHHHHLNHHHHHHHHHHHHHSWLLAVRTKEKHYLPVLGGETQALS
VILLGLLLVTIAAVIWETSEQLCPLPGWAWLRFLRLHSLWHLSVGYGVYL
LLQVSPRGRSPPLLPVISLFLSTFDTDLHPFLNFTHSLTPSSPLSLLPSL
PCPVQAAALLSGPCLYGKWSTFDNRHTRYSWVNTFFPRVVYMNCVCQADG
GEGGREEGEEEDELWVVSMRCGLERKVGRGWGGGGKRWEMPVQKRGEGRG
GGDGWRGRCDSASSTTTSNTECETAWASASSSSLPSVSSSSVEEGKNDSK
I*
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protein sequence of NO01G05790.8

>NO01G05790.8-protein ID=NO01G05790.8-protein|Name=NO01G05790.8|organism=Nannochloropsis oceanica|type=polypeptide|length=553bp
MLDAEEAWQTPVRHFCESVHDPTSPEIYSAFSSLGITVFACLCLFTGQHG
NVLVKICAAVLAWCGIGSFGFHWTLAEAWSFLDTFPMTVAAVLGMYLCWG
VILDEVFFFLHFRPSSQSLDVRQGSITDSCSVGSSPSGPPHLSSLLRSKS
QWMSGLALLASGLLVWSLALNVVYGNVFYDSLFTFLGLLLLSSALCLRVL
HMRRRRLEKEEGGMPQRTGLSRRRRVVSVLACAEGCEEERKEQEEEGKVE
GGGILMLDPRRLYPANGGKKNDGEVVGQRTVEDTRTEALEAGKAASLQRA
LLTPPSHHGHHHHLNHHHHHHHHHHHHHSWLLAVRTKEKHYLPVLGGETQ
ALSVILLGLLLVTIAAVIWETSEQLCPLPGWAWLRFLRLHSLWHLSVGYG
VYLLLQAAALLSGPCLYGKWSTFDNRHTRYSWVNTFFPRVVYMNCVCQAD
GGEGGREEGEEEDELWVVSMRCGLERKVGRGWGGGGKRWEMPVQKRGEGR
GGGDGWRGRCDSASSTTTSNTECETAWASASSSSLPSVSSSSVEEGKNDS
KI*
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