NO01G05790.1, NO01G05790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05790.1
Unique NameNO01G05790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2042
Alignment locationchr1:1618000..1620462 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1618000..1620462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05790.1 vs.
Match: XP_005854473.1 (hypothetical protein NGA_0239300 [Nannochloropsis gaditana CCMP526]; EKU21890.1 hypothetical protein NGA_0239300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 328.2 bits (840), Expect = 5.500e-86
Identity = 198/371 (53.37%), Postives = 234/371 (63.07%), Query Frame = 0 
Query:    1 MLDAEEAWQTPVRHFCESVHDPTSPEIYSAFSSLGITVFACLCLFTGQHGNVLVKICAAVLAWCGIGSFGFHWTLAEAWSFLDTFPMTVAAVLGMYLCWGVILDEVFFFLHFRPSSQSLDVRQGSITDSCSVGSSPSGPPHLSSLLRSKSQWMSGLALLASGLLVWSLALNVVYGNVFYDSLFTFLGLLLLSSALCLRVLHMRRRRLEKEEGGMPQRTGLSRRRRVVSVLACAEGCEEERKEQEEEGKVEGGGILMLDPRRLYPANG----------GKKNDGE----------VVGQRTVEDTRTEALEAGKAASLQRALL-TPPSHHGHHHHLNHHHHHHHHHHHHHSWLLAVRTKEKHYLPVLGGETQ 351
            MLD +EAWQTPVRHFCES HD   PE++SAFSSLGIT FACLCLFTGQH NVLVK+CAAVLAWCGIGSFGFHWTL+EAWSFLDTFPMT+AAVLGMYLCW V++DE+FFFL+   S    D     +T     G  P  PP    L + KSQ MS LALLASGLL+WSL LN VYGNVFYD+LFT LGL LL+SAL LR  H RR+RLE++E         SRR  V  V+ACA   E + +E+ +EG +E  G+ +  P R +  +           GK+  G+            G+R V   R  + E G    L+ ALL  PPS                     H WLLA+R KE+HY+PVLGGETQ
Sbjct:    1 MLDTKEAWQTPVRHFCESAHDHAGPEMWSAFSSLGITFFACLCLFTGQHSNVLVKMCAAVLAWCGIGSFGFHWTLSEAWSFLDTFPMTIAAVLGMYLCWAVLIDEIFFFLYRPLSLVPRDGEPAPMTQGW--GWKPPPPP---LLFKRKSQCMSVLALLASGLLIWSLVLNAVYGNVFYDTLFTVLGLFLLASALTLRAFHRRRQRLERQE---------SRREEVSMVVACAREEENDGREEGKEGAME-KGVGLASPCRGWTGDNCPEDREEPETGKEEGGQGREVEEGGEVEEGERKVRSGRGRSSETGPPRCLEEALLPLPPS---------------PRPPPMHGWLLALRVKERHYMPVLGGETQ 341
The following BLAST results are available for this feature:
BLAST of NO01G05790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854473.15.500e-8653.37hypothetical protein NGA_0239300 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05790NO01G05790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05790.1NO01G05790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05790.1.cds1NO01G05790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05790.1.cds2NO01G05790.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05790.1.cds3NO01G05790.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05790.1.cds4NO01G05790.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05790.1 ID=NO01G05790.1|Name=NO01G05790.1|organism=Nannochloropsis oceanica|type=mRNA|length=2042bp
GTATAAGCCGTCCAGGTTTCGTGTCCAAACATACAAATAGTCGACCTTGC
ACACCTCTTCTGGTTTCGGTCATATGTTTAATACACTGTCTGTGTCACTC
TCATATGTTATTTCAAGATACACAGGGTGCACAATCGATCCTTCCCACGT
CCCACACCAGTAAGCATACCTAGCCTTCATCTCAAGAAGGAATAAAGGAA
TAATATTAACTCAATCAACGCGGAACGATGCTTGATGCCGAGGAAGCCTG
GCAGACACCCGTTCGCCATTTTTGTGAATCTGTCCACGATCCGACATCTC
CCGAGATTTACAGTGCATTTTCCTCCTTGGGGATTACGGTCTTCGCCTGC
CTCTGCCTCTTCACTGGTCAGCACGGTAATGTCCTCGTCAAGATCTGTGC
AGCAGTCCTCGCATGGTGTGGAATCGGCTCCTTCGGTTTTCATTGGACGC
TTGCCGAGGCCTGGTCTTTTCTTGATACCTTTCCAATGACGGTTGCCGCA
GTGTTGGGCATGTACCTGTGCTGGGGAGTGATTTTGGACGAGGTGTTTTT
CTTCCTCCACTTTAGACCTTCGTCACAGTCCTTAGACGTGAGACAAGGCA
GCATTACAGACAGCTGCTCAGTAGGCTCGTCACCATCTGGTCCTCCACAT
CTCTCATCACTACTTCGAAGCAAGTCCCAATGGATGAGCGGCCTGGCCCT
CTTGGCCAGTGGCTTGTTGGTGTGGAGCCTGGCCTTGAATGTTGTGTACG
GGAATGTCTTTTACGACTCCCTCTTTACCTTTTTGGGTCTGCTTCTCCTA
TCCTCGGCCCTCTGCCTCCGAGTCTTGCACATGAGGCGAAGACGCTTGGA
GAAAGAGGAAGGAGGCATGCCACAAAGGACCGGCCTGTCAAGGCGCCGGC
GGGTGGTGTCGGTGCTGGCGTGTGCGGAGGGTTGTGAGGAGGAAAGGAAG
GAGCAGGAGGAAGAAGGAAAGGTGGAAGGGGGGGGGATCTTGATGCTCGA
CCCTCGGCGATTGTACCCGGCAAATGGCGGCAAGAAAAACGACGGAGAGG
TTGTAGGGCAGAGAACCGTGGAGGACACGCGGACTGAGGCGTTGGAGGCG
GGCAAGGCGGCATCCCTGCAGAGGGCCTTGCTTACCCCTCCCTCACACCA
TGGCCACCACCACCACCTCAACCACCACCATCATCATCATCATCATCATC
ATCACCATCACAGCTGGCTCCTAGCAGTCAGGACGAAGGAAAAGCACTAC
CTACCCGTATTGGGGGGAGAAACGCAGGCCCTATCAGTCATCCTCCTCGG
CCTCCTCCTTGTCACAATTGCCGCCGTTATCTGGGAGACAAGCGAGCAGC
TTTGCCCGTTACCCGGGTGGGCCTGGCTGCGATTCCTTCGCCTTCATTCA
TTGTGGCATCTCAGCGTAGGCTATGGCGTCTATTTGCTCCTCCAGGTCAG
CCCAAGAGGACGATCTCCACCCCTCCTCCCTGTAATTTCTCTCTTCCTCT
CCACCTTTGATACCGACCTACATCCTTTCCTAAATTTCACTCACTCACTC
ACTCCCTCCTCCCCTCTCTCCCTCCTCCCCTCTCTCCCGTGCCCCGTTCA
GGCCGCAGCCCTTCTCTCTGGACCCTGTCTTTATGGGAAATGGTCCACGT
TCGACAACCGGCACACGCGCTATTCGTGGGTTAATACTTTCTTTCCCCGC
GTTGTGTACATGAATTGTGTGTGTCAGGCGGATGGCGGGGAGGGAGGGAG
GGAGGAAGGGGAGGAAGAGGATGAGCTGTGGGTGGTGTCCATGAGGTGTG
GACTGGAGAGAAAGGTTGGAAGAGGGTGGGGGGGAGGGGGGAAGCGGTGG
GAGATGCCCGTGCAAAAGAGAGGAGAAGGAAGAGGAGGAGGCGATGGTTG
GAGGGGACGTTGCGACAGCGCCAGTAGCACCACCACCAGCAATACGGAGT
GTGAGACGGCGTGGGCCTCTGCTTCTTCTTCCTCCTTACCCTCAGTGTCC
TCGTCGTCGGTGGAAGAGGGGAAGAATGATTCGAAGATTTGA
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protein sequence of NO01G05790.1

>NO01G05790.1-protein ID=NO01G05790.1-protein|Name=NO01G05790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=605bp
MLDAEEAWQTPVRHFCESVHDPTSPEIYSAFSSLGITVFACLCLFTGQHG
NVLVKICAAVLAWCGIGSFGFHWTLAEAWSFLDTFPMTVAAVLGMYLCWG
VILDEVFFFLHFRPSSQSLDVRQGSITDSCSVGSSPSGPPHLSSLLRSKS
QWMSGLALLASGLLVWSLALNVVYGNVFYDSLFTFLGLLLLSSALCLRVL
HMRRRRLEKEEGGMPQRTGLSRRRRVVSVLACAEGCEEERKEQEEEGKVE
GGGILMLDPRRLYPANGGKKNDGEVVGQRTVEDTRTEALEAGKAASLQRA
LLTPPSHHGHHHHLNHHHHHHHHHHHHHSWLLAVRTKEKHYLPVLGGETQ
ALSVILLGLLLVTIAAVIWETSEQLCPLPGWAWLRFLRLHSLWHLSVGYG
VYLLLQVSPRGRSPPLLPVISLFLSTFDTDLHPFLNFTHSLTPSSPLSLL
PSLPCPVQAAALLSGPCLYGKWSTFDNRHTRYSWVNTFFPRVVYMNCVCQ
ADGGEGGREEGEEEDELWVVSMRCGLERKVGRGWGGGGKRWEMPVQKRGE
GRGGGDGWRGRCDSASSTTTSNTECETAWASASSSSLPSVSSSSVEEGKN
DSKI*
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mRNA from alignment at chr1:1618000..1620462+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05790.1 ID=NO01G05790.1|Name=NO01G05790.1|organism=Nannochloropsis oceanica|type=mRNA|length=2463bp|location=Sequence derived from alignment at chr1:1618000..1620462+ (Nannochloropsis oceanica)
GTATAAGCCGTCCAGGTTTCGTGTCCAAACATACAAATAGTCGACCTTGC
ACACCTCTTCTGGTTTCGGTCATATGTTTAATACACTGTCTGTGTCACTC
TCATATGTTATTTCAAGATACACAGGGTGCACAATCGATCCTTCCCACGT
CCCACACCAGTAAGCATACCTAGCCTTCATCTCAAGAAGGAATAAAGGAA
TAATATTAACTCAATCAACGCGGAACGATGCTTGATGCCGAGGAAGCCTG
GCAGGTGTGTAAGCGTGTGTGCGACTACCTCCTTCCCTTACAACTTTCCC
CACCCCTTTGCCTTCTCCTCCCTGCTCATTCACAACTCTCGGAACAACCT
TCCCTCCACGCTTGCATTATTAACGCTCGTAGACACCCGTTCGCCATTTT
TGTGAATCTGTCCACGATCCGACATCTCCCGAGATTTACAGTGCATTTTC
CTCCTTGGGGATTACGGTCTTCGCCTGCCTCTGCCTCTTCACTGGTCAGC
ACGGTAATGTCCTCGTCAAGATCTGTGCAGCAGTCCTCGCATGGTGTGGA
ATCGGCTCCTTCGGTTTTCATTGGACGCTTGCCGAGGCCTGGTCTTTTCT
TGATACCTTTCCAATGACGGTTGCCGCAGTGTTGGGCATGTACCTGTGCT
GGGGAGTGATTTTGGACGAGGTGTTTTTCTTCCTCCACTTTAGACCTTCG
TCACAGTCCTTAGACGTGAGACAAGGCAGCATTACAGACAGCTGCTCAGT
AGGCTCGTCACCATCTGGTCCTCCACATCTCTCATCACTACTTCGAAGGT
ACGTGCTTGACCAATGTATGCTGAAAATGTCCGACCCACCCAACCGCTCC
CTGCTCGCCCTCTCCCCCTCCCTATTCATCTCGTTCCCCGTACTCCCTCT
CTACTCATCATCTCTCTCTTCTCCTCCCCTCCGTCCCATAACTGTAGCAA
GTCCCAATGGATGAGCGGCCTGGCCCTCTTGGCCAGTGGCTTGTTGGTGT
GGAGCCTGGCCTTGAATGTTGTGTACGGGAATGTCTTTTACGACTCCCTC
TTTACCTTTTTGGGTCTGCTTCTCCTATCCTCGGCCCTCTGCCTCCGAGT
CTTGCACATGAGGCGAAGACGCTTGGAGAAAGAGGAAGGAGGCATGCCAC
AAAGGACCGGCCTGTCAAGGCGCCGGCGGGTGGTGTCGGTGCTGGCGTGT
GCGGAGGGTTGTGAGGAGGAAAGGAAGGAGCAGGAGGAAGAAGGAAAGGT
GGAAGGGGGGGGGATCTTGATGCTCGACCCTCGGCGATTGTACCCGGCAA
ATGGCGGCAAGAAAAACGACGGAGAGGTTGTAGGGCAGAGAACCGTGGAG
GACACGCGGACTGAGGCGTTGGAGGCGGGCAAGGCGGCATCCCTGCAGAG
GGCCTTGCTTACCCCTCCCTCACACCATGGCCACCACCACCACCTCAACC
ACCACCATCATCATCATCATCATCATCATCACCATCACAGCTGGCTCCTA
GCAGTCAGGACGAAGGAAAAGCACTACCTACCCGTATTGGGGGGAGAAAC
GCAGGTAGGTAGATTCTCGTCTTCGCCGGTCGACAGAGAGAGAGGGAATG
GACGCGCCCTCGAGTGTGCCTCGTACGGATGTCGCTGCTATCTTCTGCTG
CCCTTTTTCTCCTTACAAATACATTCCGTTCATTCTTTCCTTCTCTAGGC
CCTATCAGTCATCCTCCTCGGCCTCCTCCTTGTCACAATTGCCGCCGTTA
TCTGGGAGACAAGCGAGCAGCTTTGCCCGTTACCCGGGTGGGCCTGGCTG
CGATTCCTTCGCCTTCATTCATTGTGGCATCTCAGCGTAGGCTATGGCGT
CTATTTGCTCCTCCAGGTCAGCCCAAGAGGACGATCTCCACCCCTCCTCC
CTGTAATTTCTCTCTTCCTCTCCACCTTTGATACCGACCTACATCCTTTC
CTAAATTTCACTCACTCACTCACTCCCTCCTCCCCTCTCTCCCTCCTCCC
CTCTCTCCCGTGCCCCGTTCAGGCCGCAGCCCTTCTCTCTGGACCCTGTC
TTTATGGGAAATGGTCCACGTTCGACAACCGGCACACGCGCTATTCGTGG
GTTAATACTTTCTTTCCCCGCGTTGTGTACATGAATTGTGTGTGTCAGGC
GGATGGCGGGGAGGGAGGGAGGGAGGAAGGGGAGGAAGAGGATGAGCTGT
GGGTGGTGTCCATGAGGTGTGGACTGGAGAGAAAGGTTGGAAGAGGGTGG
GGGGGAGGGGGGAAGCGGTGGGAGATGCCCGTGCAAAAGAGAGGAGAAGG
AAGAGGAGGAGGCGATGGTTGGAGGGGACGTTGCGACAGCGCCAGTAGCA
CCACCACCAGCAATACGGAGTGTGAGACGGCGTGGGCCTCTGCTTCTTCT
TCCTCCTTACCCTCAGTGTCCTCGTCGTCGGTGGAAGAGGGGAAGAATGA
TTCGAAGATTTGA
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Coding sequence (CDS) from alignment at chr1:1618000..1620462+

>NO01G05790.1 ID=NO01G05790.1|Name=NO01G05790.1|organism=Nannochloropsis oceanica|type=CDS|length=1815bp|location=Sequence derived from alignment at chr1:1618000..1620462+ (Nannochloropsis oceanica)
ATGCTTGATGCCGAGGAAGCCTGGCAGACACCCGTTCGCCATTTTTGTGA
ATCTGTCCACGATCCGACATCTCCCGAGATTTACAGTGCATTTTCCTCCT
TGGGGATTACGGTCTTCGCCTGCCTCTGCCTCTTCACTGGTCAGCACGGT
AATGTCCTCGTCAAGATCTGTGCAGCAGTCCTCGCATGGTGTGGAATCGG
CTCCTTCGGTTTTCATTGGACGCTTGCCGAGGCCTGGTCTTTTCTTGATA
CCTTTCCAATGACGGTTGCCGCAGTGTTGGGCATGTACCTGTGCTGGGGA
GTGATTTTGGACGAGGTGTTTTTCTTCCTCCACTTTAGACCTTCGTCACA
GTCCTTAGACGTGAGACAAGGCAGCATTACAGACAGCTGCTCAGTAGGCT
CGTCACCATCTGGTCCTCCACATCTCTCATCACTACTTCGAAGCAAGTCC
CAATGGATGAGCGGCCTGGCCCTCTTGGCCAGTGGCTTGTTGGTGTGGAG
CCTGGCCTTGAATGTTGTGTACGGGAATGTCTTTTACGACTCCCTCTTTA
CCTTTTTGGGTCTGCTTCTCCTATCCTCGGCCCTCTGCCTCCGAGTCTTG
CACATGAGGCGAAGACGCTTGGAGAAAGAGGAAGGAGGCATGCCACAAAG
GACCGGCCTGTCAAGGCGCCGGCGGGTGGTGTCGGTGCTGGCGTGTGCGG
AGGGTTGTGAGGAGGAAAGGAAGGAGCAGGAGGAAGAAGGAAAGGTGGAA
GGGGGGGGGATCTTGATGCTCGACCCTCGGCGATTGTACCCGGCAAATGG
CGGCAAGAAAAACGACGGAGAGGTTGTAGGGCAGAGAACCGTGGAGGACA
CGCGGACTGAGGCGTTGGAGGCGGGCAAGGCGGCATCCCTGCAGAGGGCC
TTGCTTACCCCTCCCTCACACCATGGCCACCACCACCACCTCAACCACCA
CCATCATCATCATCATCATCATCATCACCATCACAGCTGGCTCCTAGCAG
TCAGGACGAAGGAAAAGCACTACCTACCCGTATTGGGGGGAGAAACGCAG
GCCCTATCAGTCATCCTCCTCGGCCTCCTCCTTGTCACAATTGCCGCCGT
TATCTGGGAGACAAGCGAGCAGCTTTGCCCGTTACCCGGGTGGGCCTGGC
TGCGATTCCTTCGCCTTCATTCATTGTGGCATCTCAGCGTAGGCTATGGC
GTCTATTTGCTCCTCCAGGTCAGCCCAAGAGGACGATCTCCACCCCTCCT
CCCTGTAATTTCTCTCTTCCTCTCCACCTTTGATACCGACCTACATCCTT
TCCTAAATTTCACTCACTCACTCACTCCCTCCTCCCCTCTCTCCCTCCTC
CCCTCTCTCCCGTGCCCCGTTCAGGCCGCAGCCCTTCTCTCTGGACCCTG
TCTTTATGGGAAATGGTCCACGTTCGACAACCGGCACACGCGCTATTCGT
GGGTTAATACTTTCTTTCCCCGCGTTGTGTACATGAATTGTGTGTGTCAG
GCGGATGGCGGGGAGGGAGGGAGGGAGGAAGGGGAGGAAGAGGATGAGCT
GTGGGTGGTGTCCATGAGGTGTGGACTGGAGAGAAAGGTTGGAAGAGGGT
GGGGGGGAGGGGGGAAGCGGTGGGAGATGCCCGTGCAAAAGAGAGGAGAA
GGAAGAGGAGGAGGCGATGGTTGGAGGGGACGTTGCGACAGCGCCAGTAG
CACCACCACCAGCAATACGGAGTGTGAGACGGCGTGGGCCTCTGCTTCTT
CTTCCTCCTTACCCTCAGTGTCCTCGTCGTCGGTGGAAGAGGGGAAGAAT
GATTCGAAGATTTGA
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Synonyms
Publications