NO01G05790.6, NO01G05790.6 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G05790.6
Unique NameNO01G05790.6
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2170
Alignment locationchr1:1618000..1620462 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1618000..1620462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G05790.6 vs.
Match: XP_005854473.1 (hypothetical protein NGA_0239300 [Nannochloropsis gaditana CCMP526]; EKU21890.1 hypothetical protein NGA_0239300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 164.5 bits (415), Expect = 9.000e-37
Identity = 124/285 (43.51%), Postives = 155/285 (54.39%), Query Frame = 0 
Query:    1 MTVAAVLGMYLCWGVILDEVFFFLHFRPSSQSLDVRQGSITDSCSVGSSPSGPPHLSSLLRSKSQWMSGLALLASGLLVWSLALNVVYGNVFYDSLFTFLGLLLLSSALCLRVLHMRRRRLEKEEGGMPQRTGLSRRRRVVSVLACAEGCEEERKEQEEEGKVEGGGILMLDPRRLYPANG----------GKKNDGE----------VVGQRTVEDTRTEALEAGKAASLQRALL-TPPSHHGHHHHLNHHHHHHHHHHHHHSWLLAVRTKEKHYLPVLGGETQ 265
            MT+AAVLGMYLCW V++DE+FFFL+   S    D     +T     G  P  PP    L + KSQ MS LALLASGLL+WSL LN VYGNVFYD+LFT LGL LL+SAL LR  H RR+RLE++E         SRR  V  V+ACA   E + +E+ +EG +E  G+ +  P R +  +           GK+  G+            G+R V   R  + E G    L+ ALL  PPS                     H WLLA+R KE+HY+PVLGGETQ
Sbjct:   87 MTIAAVLGMYLCWAVLIDEIFFFLYRPLSLVPRDGEPAPMTQGW--GWKPPPPP---LLFKRKSQCMSVLALLASGLLIWSLVLNAVYGNVFYDTLFTVLGLFLLASALTLRAFHRRRQRLERQE---------SRREEVSMVVACAREEENDGREEGKEGAME-KGVGLASPCRGWTGDNCPEDREEPETGKEEGGQGREVEEGGEVEEGERKVRSGRGRSSETGPPRCLEEALLPLPPS---------------PRPPPMHGWLLALRVKERHYMPVLGGETQ 341
The following BLAST results are available for this feature:
BLAST of NO01G05790.6 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854473.19.000e-3743.51hypothetical protein NGA_0239300 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G05790NO01G05790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G05790.6NO01G05790.6-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G05790.6.cds1NO01G05790.6.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05790.6.cds2NO01G05790.6.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G05790.6.cds3NO01G05790.6.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G05790.6 ID=NO01G05790.6|Name=NO01G05790.6|organism=Nannochloropsis oceanica|type=mRNA|length=2170bp
GTATAAGCCGTCCAGGTTTCGTGTCCAAACATACAAATAGTCGACCTTGC
ACACCTCTTCTGGTTTCGGTCATATGTTTAATACACTGTCTGTGTCACTC
TCATATGTTATTTCAAGATACACAGGGTGCACAATCGATCCTTCCCACGT
CCCACACCAGTAAGCATACCTAGCCTTCATCTCAAGAAGGAATAAAGGAA
TAATATTAACTCAATCAACGCGGAACGATGCTTGATGCCGAGGAAGCCTG
GCAGGTGTGTAAGCGTGTGTGCGACTACCTCCTTCCCTTACAACTTTCCC
CACCCCTTTGCCTTCTCCTCCCTGCTCATTCACAACTCTCGGAACAACCT
TCCCTCCACGCTTGCATTATTAACGCTCGTAGACACCCGTTCGCCATTTT
TGTGAATCTGTCCACGATCCGACATCTCCCGAGATTTACAGTGCATTTTC
CTCCTTGGGGATTACGGTCTTCGCCTGCCTCTGCCTCTTCACTGGTCAGC
ACGGTAATGTCCTCGTCAAGATCTGTGCAGCAGTCCTCGCATGGTGTGGA
ATCGGCTCCTTCGGTTTTCATTGGACGCTTGCCGAGGCCTGGTCTTTTCT
TGATACCTTTCCAATGACGGTTGCCGCAGTGTTGGGCATGTACCTGTGCT
GGGGAGTGATTTTGGACGAGGTGTTTTTCTTCCTCCACTTTAGACCTTCG
TCACAGTCCTTAGACGTGAGACAAGGCAGCATTACAGACAGCTGCTCAGT
AGGCTCGTCACCATCTGGTCCTCCACATCTCTCATCACTACTTCGAAGCA
AGTCCCAATGGATGAGCGGCCTGGCCCTCTTGGCCAGTGGCTTGTTGGTG
TGGAGCCTGGCCTTGAATGTTGTGTACGGGAATGTCTTTTACGACTCCCT
CTTTACCTTTTTGGGTCTGCTTCTCCTATCCTCGGCCCTCTGCCTCCGAG
TCTTGCACATGAGGCGAAGACGCTTGGAGAAAGAGGAAGGAGGCATGCCA
CAAAGGACCGGCCTGTCAAGGCGCCGGCGGGTGGTGTCGGTGCTGGCGTG
TGCGGAGGGTTGTGAGGAGGAAAGGAAGGAGCAGGAGGAAGAAGGAAAGG
TGGAAGGGGGGGGGATCTTGATGCTCGACCCTCGGCGATTGTACCCGGCA
AATGGCGGCAAGAAAAACGACGGAGAGGTTGTAGGGCAGAGAACCGTGGA
GGACACGCGGACTGAGGCGTTGGAGGCGGGCAAGGCGGCATCCCTGCAGA
GGGCCTTGCTTACCCCTCCCTCACACCATGGCCACCACCACCACCTCAAC
CACCACCATCATCATCATCATCATCATCATCACCATCACAGCTGGCTCCT
AGCAGTCAGGACGAAGGAAAAGCACTACCTACCCGTATTGGGGGGAGAAA
CGCAGGCCCTATCAGTCATCCTCCTCGGCCTCCTCCTTGTCACAATTGCC
GCCGTTATCTGGGAGACAAGCGAGCAGCTTTGCCCGTTACCCGGGTGGGC
CTGGCTGCGATTCCTTCGCCTTCATTCATTGTGGCATCTCAGCGTAGGCT
ATGGCGTCTATTTGCTCCTCCAGGTCAGCCCAAGAGGACGATCTCCACCC
CTCCTCCCTGTAATTTCTCTCTTCCTCTCCACCTTTGATACCGACCTACA
TCCTTTCCTAAATTTCACTCACTCACTCACTCCCTCCTCCCCTCTCTCCC
TCCTCCCCTCTCTCCCGTGCCCCGTTCAGGCCGCAGCCCTTCTCTCTGGA
CCCTGTCTTTATGGGAAATGGTCCACGTTCGACAACCGGCACACGCGCTA
TTCGTGGGTTAATACTTTCTTTCCCCGCGTTGTGTACATGAATTGTGTGT
GTCAGGCGGATGGCGGGGAGGGAGGGAGGGAGGAAGGGGAGGAAGAGGAT
GAGCTGTGGGTGGTGTCCATGAGGTGTGGACTGGAGAGAAAGGTTGGAAG
AGGGTGGGGGGGAGGGGGGAAGCGGTGGGAGATGCCCGTGCAAAAGAGAG
GAGAAGGAAGAGGAGGAGGCGATGGTTGGAGGGGACGTTGCGACAGCGCC
AGTAGCACCACCACCAGCAATACGGAGTGTGAGACGGCGTGGGCCTCTGC
TTCTTCTTCCTCCTTACCCTCAGTGTCCTCGTCGTCGGTGGAAGAGGGGA
AGAATGATTCGAAGATTTGA
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protein sequence of NO01G05790.6

>NO01G05790.6-protein ID=NO01G05790.6-protein|Name=NO01G05790.6|organism=Nannochloropsis oceanica|type=polypeptide|length=519bp
MTVAAVLGMYLCWGVILDEVFFFLHFRPSSQSLDVRQGSITDSCSVGSSP
SGPPHLSSLLRSKSQWMSGLALLASGLLVWSLALNVVYGNVFYDSLFTFL
GLLLLSSALCLRVLHMRRRRLEKEEGGMPQRTGLSRRRRVVSVLACAEGC
EEERKEQEEEGKVEGGGILMLDPRRLYPANGGKKNDGEVVGQRTVEDTRT
EALEAGKAASLQRALLTPPSHHGHHHHLNHHHHHHHHHHHHHSWLLAVRT
KEKHYLPVLGGETQALSVILLGLLLVTIAAVIWETSEQLCPLPGWAWLRF
LRLHSLWHLSVGYGVYLLLQVSPRGRSPPLLPVISLFLSTFDTDLHPFLN
FTHSLTPSSPLSLLPSLPCPVQAAALLSGPCLYGKWSTFDNRHTRYSWVN
TFFPRVVYMNCVCQADGGEGGREEGEEEDELWVVSMRCGLERKVGRGWGG
GGKRWEMPVQKRGEGRGGGDGWRGRCDSASSTTTSNTECETAWASASSSS
LPSVSSSSVEEGKNDSKI*
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mRNA from alignment at chr1:1618000..1620462+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G05790.6 ID=NO01G05790.6|Name=NO01G05790.6|organism=Nannochloropsis oceanica|type=mRNA|length=2463bp|location=Sequence derived from alignment at chr1:1618000..1620462+ (Nannochloropsis oceanica)
GTATAAGCCGTCCAGGTTTCGTGTCCAAACATACAAATAGTCGACCTTGC
ACACCTCTTCTGGTTTCGGTCATATGTTTAATACACTGTCTGTGTCACTC
TCATATGTTATTTCAAGATACACAGGGTGCACAATCGATCCTTCCCACGT
CCCACACCAGTAAGCATACCTAGCCTTCATCTCAAGAAGGAATAAAGGAA
TAATATTAACTCAATCAACGCGGAACGATGCTTGATGCCGAGGAAGCCTG
GCAGGTGTGTAAGCGTGTGTGCGACTACCTCCTTCCCTTACAACTTTCCC
CACCCCTTTGCCTTCTCCTCCCTGCTCATTCACAACTCTCGGAACAACCT
TCCCTCCACGCTTGCATTATTAACGCTCGTAGACACCCGTTCGCCATTTT
TGTGAATCTGTCCACGATCCGACATCTCCCGAGATTTACAGTGCATTTTC
CTCCTTGGGGATTACGGTCTTCGCCTGCCTCTGCCTCTTCACTGGTCAGC
ACGGTAATGTCCTCGTCAAGATCTGTGCAGCAGTCCTCGCATGGTGTGGA
ATCGGCTCCTTCGGTTTTCATTGGACGCTTGCCGAGGCCTGGTCTTTTCT
TGATACCTTTCCAATGACGGTTGCCGCAGTGTTGGGCATGTACCTGTGCT
GGGGAGTGATTTTGGACGAGGTGTTTTTCTTCCTCCACTTTAGACCTTCG
TCACAGTCCTTAGACGTGAGACAAGGCAGCATTACAGACAGCTGCTCAGT
AGGCTCGTCACCATCTGGTCCTCCACATCTCTCATCACTACTTCGAAGGT
ACGTGCTTGACCAATGTATGCTGAAAATGTCCGACCCACCCAACCGCTCC
CTGCTCGCCCTCTCCCCCTCCCTATTCATCTCGTTCCCCGTACTCCCTCT
CTACTCATCATCTCTCTCTTCTCCTCCCCTCCGTCCCATAACTGTAGCAA
GTCCCAATGGATGAGCGGCCTGGCCCTCTTGGCCAGTGGCTTGTTGGTGT
GGAGCCTGGCCTTGAATGTTGTGTACGGGAATGTCTTTTACGACTCCCTC
TTTACCTTTTTGGGTCTGCTTCTCCTATCCTCGGCCCTCTGCCTCCGAGT
CTTGCACATGAGGCGAAGACGCTTGGAGAAAGAGGAAGGAGGCATGCCAC
AAAGGACCGGCCTGTCAAGGCGCCGGCGGGTGGTGTCGGTGCTGGCGTGT
GCGGAGGGTTGTGAGGAGGAAAGGAAGGAGCAGGAGGAAGAAGGAAAGGT
GGAAGGGGGGGGGATCTTGATGCTCGACCCTCGGCGATTGTACCCGGCAA
ATGGCGGCAAGAAAAACGACGGAGAGGTTGTAGGGCAGAGAACCGTGGAG
GACACGCGGACTGAGGCGTTGGAGGCGGGCAAGGCGGCATCCCTGCAGAG
GGCCTTGCTTACCCCTCCCTCACACCATGGCCACCACCACCACCTCAACC
ACCACCATCATCATCATCATCATCATCATCACCATCACAGCTGGCTCCTA
GCAGTCAGGACGAAGGAAAAGCACTACCTACCCGTATTGGGGGGAGAAAC
GCAGGTAGGTAGATTCTCGTCTTCGCCGGTCGACAGAGAGAGAGGGAATG
GACGCGCCCTCGAGTGTGCCTCGTACGGATGTCGCTGCTATCTTCTGCTG
CCCTTTTTCTCCTTACAAATACATTCCGTTCATTCTTTCCTTCTCTAGGC
CCTATCAGTCATCCTCCTCGGCCTCCTCCTTGTCACAATTGCCGCCGTTA
TCTGGGAGACAAGCGAGCAGCTTTGCCCGTTACCCGGGTGGGCCTGGCTG
CGATTCCTTCGCCTTCATTCATTGTGGCATCTCAGCGTAGGCTATGGCGT
CTATTTGCTCCTCCAGGTCAGCCCAAGAGGACGATCTCCACCCCTCCTCC
CTGTAATTTCTCTCTTCCTCTCCACCTTTGATACCGACCTACATCCTTTC
CTAAATTTCACTCACTCACTCACTCCCTCCTCCCCTCTCTCCCTCCTCCC
CTCTCTCCCGTGCCCCGTTCAGGCCGCAGCCCTTCTCTCTGGACCCTGTC
TTTATGGGAAATGGTCCACGTTCGACAACCGGCACACGCGCTATTCGTGG
GTTAATACTTTCTTTCCCCGCGTTGTGTACATGAATTGTGTGTGTCAGGC
GGATGGCGGGGAGGGAGGGAGGGAGGAAGGGGAGGAAGAGGATGAGCTGT
GGGTGGTGTCCATGAGGTGTGGACTGGAGAGAAAGGTTGGAAGAGGGTGG
GGGGGAGGGGGGAAGCGGTGGGAGATGCCCGTGCAAAAGAGAGGAGAAGG
AAGAGGAGGAGGCGATGGTTGGAGGGGACGTTGCGACAGCGCCAGTAGCA
CCACCACCAGCAATACGGAGTGTGAGACGGCGTGGGCCTCTGCTTCTTCT
TCCTCCTTACCCTCAGTGTCCTCGTCGTCGGTGGAAGAGGGGAAGAATGA
TTCGAAGATTTGA
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Coding sequence (CDS) from alignment at chr1:1618000..1620462+

>NO01G05790.6 ID=NO01G05790.6|Name=NO01G05790.6|organism=Nannochloropsis oceanica|type=CDS|length=1557bp|location=Sequence derived from alignment at chr1:1618000..1620462+ (Nannochloropsis oceanica)
ATGACGGTTGCCGCAGTGTTGGGCATGTACCTGTGCTGGGGAGTGATTTT
GGACGAGGTGTTTTTCTTCCTCCACTTTAGACCTTCGTCACAGTCCTTAG
ACGTGAGACAAGGCAGCATTACAGACAGCTGCTCAGTAGGCTCGTCACCA
TCTGGTCCTCCACATCTCTCATCACTACTTCGAAGCAAGTCCCAATGGAT
GAGCGGCCTGGCCCTCTTGGCCAGTGGCTTGTTGGTGTGGAGCCTGGCCT
TGAATGTTGTGTACGGGAATGTCTTTTACGACTCCCTCTTTACCTTTTTG
GGTCTGCTTCTCCTATCCTCGGCCCTCTGCCTCCGAGTCTTGCACATGAG
GCGAAGACGCTTGGAGAAAGAGGAAGGAGGCATGCCACAAAGGACCGGCC
TGTCAAGGCGCCGGCGGGTGGTGTCGGTGCTGGCGTGTGCGGAGGGTTGT
GAGGAGGAAAGGAAGGAGCAGGAGGAAGAAGGAAAGGTGGAAGGGGGGGG
GATCTTGATGCTCGACCCTCGGCGATTGTACCCGGCAAATGGCGGCAAGA
AAAACGACGGAGAGGTTGTAGGGCAGAGAACCGTGGAGGACACGCGGACT
GAGGCGTTGGAGGCGGGCAAGGCGGCATCCCTGCAGAGGGCCTTGCTTAC
CCCTCCCTCACACCATGGCCACCACCACCACCTCAACCACCACCATCATC
ATCATCATCATCATCATCACCATCACAGCTGGCTCCTAGCAGTCAGGACG
AAGGAAAAGCACTACCTACCCGTATTGGGGGGAGAAACGCAGGCCCTATC
AGTCATCCTCCTCGGCCTCCTCCTTGTCACAATTGCCGCCGTTATCTGGG
AGACAAGCGAGCAGCTTTGCCCGTTACCCGGGTGGGCCTGGCTGCGATTC
CTTCGCCTTCATTCATTGTGGCATCTCAGCGTAGGCTATGGCGTCTATTT
GCTCCTCCAGGTCAGCCCAAGAGGACGATCTCCACCCCTCCTCCCTGTAA
TTTCTCTCTTCCTCTCCACCTTTGATACCGACCTACATCCTTTCCTAAAT
TTCACTCACTCACTCACTCCCTCCTCCCCTCTCTCCCTCCTCCCCTCTCT
CCCGTGCCCCGTTCAGGCCGCAGCCCTTCTCTCTGGACCCTGTCTTTATG
GGAAATGGTCCACGTTCGACAACCGGCACACGCGCTATTCGTGGGTTAAT
ACTTTCTTTCCCCGCGTTGTGTACATGAATTGTGTGTGTCAGGCGGATGG
CGGGGAGGGAGGGAGGGAGGAAGGGGAGGAAGAGGATGAGCTGTGGGTGG
TGTCCATGAGGTGTGGACTGGAGAGAAAGGTTGGAAGAGGGTGGGGGGGA
GGGGGGAAGCGGTGGGAGATGCCCGTGCAAAAGAGAGGAGAAGGAAGAGG
AGGAGGCGATGGTTGGAGGGGACGTTGCGACAGCGCCAGTAGCACCACCA
CCAGCAATACGGAGTGTGAGACGGCGTGGGCCTCTGCTTCTTCTTCCTCC
TTACCCTCAGTGTCCTCGTCGTCGGTGGAAGAGGGGAAGAATGATTCGAA
GATTTGA
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Synonyms
Publications