NO01G05790.3, NO01G05790.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G05790.3
Unique Name	NO01G05790.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2035
Alignment location	chr1:1618000..1620462 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:1618000..1620462 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO01G05790.3 vs.
Match: EWM22813.1 (Ceramidase [Nannochloropsis gaditana])

HSP 1 Score: 234.6 bits (597), Expect = 6.100e-58
Identity = 129/218 (59.17%), Postives = 156/218 (71.56%), Query Frame = 0

Query:  225 HSWLLAVRTKEKHYLPVLGGETQALSVILLGLLLVTIAAVIWETSEQLCPLPGWAWLRFLRLHSLWHLSVGYGVYLLLQAAALLSGPCLYGKWSTFDNRHTRYSWVNTFFPRVVYMNCVCQADGGEGGREEGEEEDELWVVSMRCGL-ERKVGRGWGGGGKRWEMPVQKRGEGR--GGGDGWRGRCDSASSTTTSNTECETAWASASSSSLPSVSSSS 440
            H WLLA+R KE+HY+PVLGGETQALSVILLGLLLV  AA+IWETSEQLCPLP W WLR+LRLH+LWHLS+GYGVYLLLQA+ALLS P L+GK + FDNRH+R  W+NTFFPRVVY+NC CQ+ G E G  EG+ + E WV+ + CG  ER+      GG    +   ++ G G   GG +G R R  SA ST  S     T  +S++SSS    SS+S
Sbjct:  225 HGWLLALRVKERHYMPVLGGETQALSVILLGLLLVLFAAIIWETSEQLCPLPHWGWLRYLRLHALWHLSIGYGVYLLLQASALLSAPSLFGKRAMFDNRHSRRIWINTFFPRVVYLNCTCQS-GRESGGREGKGDREWWVICVECGREERRRAEVESGGWDVRQRESEREGNGGLIGGSEGGRLRSRSACSTVGSEGSASTYRSSSASSSPLHPSSTS 441

The following BLAST results are available for this feature:

BLAST of NO01G05790.3 vs.

BLAST of NO01G05790.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM22813.1	6.100e-58	59.17	Ceramidase [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G05790	NO01G05790	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G05790.3	NO01G05790.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G05790.3.cds1	NO01G05790.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05790.3.cds2	NO01G05790.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G05790.3.cds3	NO01G05790.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:1618000..1620462+
coding sequence from alignment at chr1:1618000..1620462+

mRNA sequence

>NO01G05790.3 ID=NO01G05790.3|Name=NO01G05790.3|organism=Nannochloropsis oceanica|type=mRNA|length=2035bp
GTATAAGCCGTCCAGGTTTCGTGTCCAAACATACAAATAGTCGACCTTGC
ACACCTCTTCTGGTTTCGGTCATATGTTTAATACACTGTCTGTGTCACTC
TCATATGTTATTTCAAGATACACAGGGTGCACAATCGATCCTTCCCACGT
CCCACACCAGTAAGCATACCTAGCCTTCATCTCAAGAAGGAATAAAGGAA
TAATATTAACTCAATCAACGCGGAACGATGCTTGATGCCGAGGAAGCCTG
GCAGACACCCGTTCGCCATTTTTGTGAATCTGTCCACGATCCGACATCTC
CCGAGATTTACAGTGCATTTTCCTCCTTGGGGATTACGGTCTTCGCCTGC
CTCTGCCTCTTCACTGGTCAGCACGGTAATGTCCTCGTCAAGATCTGTGC
AGCAGTCCTCGCATGGTGTGGAATCGGCTCCTTCGGTTTTCATTGGACGC
TTGCCGAGGCCTGGTCTTTTCTTGATACCTTTCCAATGACGGTTGCCGCA
GTGTTGGGCATGTACCTGTGCTGGGGAGTGATTTTGGACGAGGTGTTTTT
CTTCCTCCACTTTAGACCTTCGTCACAGTCCTTAGACGTGAGACAAGGCA
GCATTACAGACAGCTGCTCAGTAGGCTCGTCACCATCTGGTCCTCCACAT
CTCTCATCACTACTTCGAAGGTACGTGCTTGACCAATGTATGCTGAAAAT
GTCCGACCCACCCAACCGCTCCCTGCTCGCCCTCTCCCCCTCCCTATTCA
TCTCGTTCCCCGTACTCCCTCTCTACTCATCATCTCTCTCTTCTCCTCCC
CTCCGTCCCATAACTGTAGCAAGTCCCAATGGATGAGCGGCCTGGCCCTC
TTGGCCAGTGGCTTGTTGGTGTGGAGCCTGGCCTTGAATGTTGTGTACGG
GAATGTCTTTTACGACTCCCTCTTTACCTTTTTGGGTCTGCTTCTCCTAT
CCTCGGCCCTCTGCCTCCGAGTCTTGCACATGAGGCGAAGACGCTTGGAG
AAAGAGGAAGGAGGCATGCCACAAAGGACCGGCCTGTCAAGGCGCCGGCG
GGTGGTGTCGGTGCTGGCGTGTGCGGAGGGTTGTGAGGAGGAAAGGAAGG
AGCAGGAGGAAGAAGGAAAGGTGGAAGGGGGGGGGATCTTGATGCTCGAC
CCTCGGCGATTGTACCCGGCAAATGGCGGCAAGAAAAACGACGGAGAGGT
TGTAGGGCAGAGAACCGTGGAGGACACGCGGACTGAGGCGTTGGAGGCGG
GCAAGGCGGCATCCCTGCAGAGGGCCTTGCTTACCCCTCCCTCACACCAT
GGCCACCACCACCACCTCAACCACCACCATCATCATCATCATCATCATCA
TCACCATCACAGCTGGCTCCTAGCAGTCAGGACGAAGGAAAAGCACTACC
TACCCGTATTGGGGGGAGAAACGCAGGCCCTATCAGTCATCCTCCTCGGC
CTCCTCCTTGTCACAATTGCCGCCGTTATCTGGGAGACAAGCGAGCAGCT
TTGCCCGTTACCCGGGTGGGCCTGGCTGCGATTCCTTCGCCTTCATTCAT
TGTGGCATCTCAGCGTAGGCTATGGCGTCTATTTGCTCCTCCAGGCCGCA
GCCCTTCTCTCTGGACCCTGTCTTTATGGGAAATGGTCCACGTTCGACAA
CCGGCACACGCGCTATTCGTGGGTTAATACTTTCTTTCCCCGCGTTGTGT
ACATGAATTGTGTGTGTCAGGCGGATGGCGGGGAGGGAGGGAGGGAGGAA
GGGGAGGAAGAGGATGAGCTGTGGGTGGTGTCCATGAGGTGTGGACTGGA
GAGAAAGGTTGGAAGAGGGTGGGGGGGAGGGGGGAAGCGGTGGGAGATGC
CCGTGCAAAAGAGAGGAGAAGGAAGAGGAGGAGGCGATGGTTGGAGGGGA
CGTTGCGACAGCGCCAGTAGCACCACCACCAGCAATACGGAGTGTGAGAC
GGCGTGGGCCTCTGCTTCTTCTTCCTCCTTACCCTCAGTGTCCTCGTCGT
CGGTGGAAGAGGGGAAGAATGATTCGAAGATTTGA

protein sequence of NO01G05790.3

>NO01G05790.3-protein ID=NO01G05790.3-protein|Name=NO01G05790.3|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp
MYAENVRPTQPLPARPLPLPIHLVPRTPSLLIISLFSSPPSHNCSKSQWM
SGLALLASGLLVWSLALNVVYGNVFYDSLFTFLGLLLLSSALCLRVLHMR
RRRLEKEEGGMPQRTGLSRRRRVVSVLACAEGCEEERKEQEEEGKVEGGG
ILMLDPRRLYPANGGKKNDGEVVGQRTVEDTRTEALEAGKAASLQRALLT
PPSHHGHHHHLNHHHHHHHHHHHHHSWLLAVRTKEKHYLPVLGGETQALS
VILLGLLLVTIAAVIWETSEQLCPLPGWAWLRFLRLHSLWHLSVGYGVYL
LLQAAALLSGPCLYGKWSTFDNRHTRYSWVNTFFPRVVYMNCVCQADGGE
GGREEGEEEDELWVVSMRCGLERKVGRGWGGGGKRWEMPVQKRGEGRGGG
DGWRGRCDSASSTTTSNTECETAWASASSSSLPSVSSSSVEEGKNDSKI*

mRNA from alignment at chr1:1618000..1620462+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G05790.3 ID=NO01G05790.3|Name=NO01G05790.3|organism=Nannochloropsis oceanica|type=mRNA|length=2463bp|location=Sequence derived from alignment at chr1:1618000..1620462+ (Nannochloropsis oceanica)
GTATAAGCCGTCCAGGTTTCGTGTCCAAACATACAAATAGTCGACCTTGC
ACACCTCTTCTGGTTTCGGTCATATGTTTAATACACTGTCTGTGTCACTC
TCATATGTTATTTCAAGATACACAGGGTGCACAATCGATCCTTCCCACGT
CCCACACCAGTAAGCATACCTAGCCTTCATCTCAAGAAGGAATAAAGGAA
TAATATTAACTCAATCAACGCGGAACGATGCTTGATGCCGAGGAAGCCTG
GCAGGTGTGTAAGCGTGTGTGCGACTACCTCCTTCCCTTACAACTTTCCC
CACCCCTTTGCCTTCTCCTCCCTGCTCATTCACAACTCTCGGAACAACCT
TCCCTCCACGCTTGCATTATTAACGCTCGTAGACACCCGTTCGCCATTTT
TGTGAATCTGTCCACGATCCGACATCTCCCGAGATTTACAGTGCATTTTC
CTCCTTGGGGATTACGGTCTTCGCCTGCCTCTGCCTCTTCACTGGTCAGC
ACGGTAATGTCCTCGTCAAGATCTGTGCAGCAGTCCTCGCATGGTGTGGA
ATCGGCTCCTTCGGTTTTCATTGGACGCTTGCCGAGGCCTGGTCTTTTCT
TGATACCTTTCCAATGACGGTTGCCGCAGTGTTGGGCATGTACCTGTGCT
GGGGAGTGATTTTGGACGAGGTGTTTTTCTTCCTCCACTTTAGACCTTCG
TCACAGTCCTTAGACGTGAGACAAGGCAGCATTACAGACAGCTGCTCAGT
AGGCTCGTCACCATCTGGTCCTCCACATCTCTCATCACTACTTCGAAGGT
ACGTGCTTGACCAATGTATGCTGAAAATGTCCGACCCACCCAACCGCTCC
CTGCTCGCCCTCTCCCCCTCCCTATTCATCTCGTTCCCCGTACTCCCTCT
CTACTCATCATCTCTCTCTTCTCCTCCCCTCCGTCCCATAACTGTAGCAA
GTCCCAATGGATGAGCGGCCTGGCCCTCTTGGCCAGTGGCTTGTTGGTGT
GGAGCCTGGCCTTGAATGTTGTGTACGGGAATGTCTTTTACGACTCCCTC
TTTACCTTTTTGGGTCTGCTTCTCCTATCCTCGGCCCTCTGCCTCCGAGT
CTTGCACATGAGGCGAAGACGCTTGGAGAAAGAGGAAGGAGGCATGCCAC
AAAGGACCGGCCTGTCAAGGCGCCGGCGGGTGGTGTCGGTGCTGGCGTGT
GCGGAGGGTTGTGAGGAGGAAAGGAAGGAGCAGGAGGAAGAAGGAAAGGT
GGAAGGGGGGGGGATCTTGATGCTCGACCCTCGGCGATTGTACCCGGCAA
ATGGCGGCAAGAAAAACGACGGAGAGGTTGTAGGGCAGAGAACCGTGGAG
GACACGCGGACTGAGGCGTTGGAGGCGGGCAAGGCGGCATCCCTGCAGAG
GGCCTTGCTTACCCCTCCCTCACACCATGGCCACCACCACCACCTCAACC
ACCACCATCATCATCATCATCATCATCATCACCATCACAGCTGGCTCCTA
GCAGTCAGGACGAAGGAAAAGCACTACCTACCCGTATTGGGGGGAGAAAC
GCAGGTAGGTAGATTCTCGTCTTCGCCGGTCGACAGAGAGAGAGGGAATG
GACGCGCCCTCGAGTGTGCCTCGTACGGATGTCGCTGCTATCTTCTGCTG
CCCTTTTTCTCCTTACAAATACATTCCGTTCATTCTTTCCTTCTCTAGGC
CCTATCAGTCATCCTCCTCGGCCTCCTCCTTGTCACAATTGCCGCCGTTA
TCTGGGAGACAAGCGAGCAGCTTTGCCCGTTACCCGGGTGGGCCTGGCTG
CGATTCCTTCGCCTTCATTCATTGTGGCATCTCAGCGTAGGCTATGGCGT
CTATTTGCTCCTCCAGGTCAGCCCAAGAGGACGATCTCCACCCCTCCTCC
CTGTAATTTCTCTCTTCCTCTCCACCTTTGATACCGACCTACATCCTTTC
CTAAATTTCACTCACTCACTCACTCCCTCCTCCCCTCTCTCCCTCCTCCC
CTCTCTCCCGTGCCCCGTTCAGGCCGCAGCCCTTCTCTCTGGACCCTGTC
TTTATGGGAAATGGTCCACGTTCGACAACCGGCACACGCGCTATTCGTGG
GTTAATACTTTCTTTCCCCGCGTTGTGTACATGAATTGTGTGTGTCAGGC
GGATGGCGGGGAGGGAGGGAGGGAGGAAGGGGAGGAAGAGGATGAGCTGT
GGGTGGTGTCCATGAGGTGTGGACTGGAGAGAAAGGTTGGAAGAGGGTGG
GGGGGAGGGGGGAAGCGGTGGGAGATGCCCGTGCAAAAGAGAGGAGAAGG
AAGAGGAGGAGGCGATGGTTGGAGGGGACGTTGCGACAGCGCCAGTAGCA
CCACCACCAGCAATACGGAGTGTGAGACGGCGTGGGCCTCTGCTTCTTCT
TCCTCCTTACCCTCAGTGTCCTCGTCGTCGGTGGAAGAGGGGAAGAATGA
TTCGAAGATTTGA

Coding sequence (CDS) from alignment at chr1:1618000..1620462+

>NO01G05790.3 ID=NO01G05790.3|Name=NO01G05790.3|organism=Nannochloropsis oceanica|type=CDS|length=1350bp|location=Sequence derived from alignment at chr1:1618000..1620462+ (Nannochloropsis oceanica)
ATGTATGCTGAAAATGTCCGACCCACCCAACCGCTCCCTGCTCGCCCTCT
CCCCCTCCCTATTCATCTCGTTCCCCGTACTCCCTCTCTACTCATCATCT
CTCTCTTCTCCTCCCCTCCGTCCCATAACTGTAGCAAGTCCCAATGGATG
AGCGGCCTGGCCCTCTTGGCCAGTGGCTTGTTGGTGTGGAGCCTGGCCTT
GAATGTTGTGTACGGGAATGTCTTTTACGACTCCCTCTTTACCTTTTTGG
GTCTGCTTCTCCTATCCTCGGCCCTCTGCCTCCGAGTCTTGCACATGAGG
CGAAGACGCTTGGAGAAAGAGGAAGGAGGCATGCCACAAAGGACCGGCCT
GTCAAGGCGCCGGCGGGTGGTGTCGGTGCTGGCGTGTGCGGAGGGTTGTG
AGGAGGAAAGGAAGGAGCAGGAGGAAGAAGGAAAGGTGGAAGGGGGGGGG
ATCTTGATGCTCGACCCTCGGCGATTGTACCCGGCAAATGGCGGCAAGAA
AAACGACGGAGAGGTTGTAGGGCAGAGAACCGTGGAGGACACGCGGACTG
AGGCGTTGGAGGCGGGCAAGGCGGCATCCCTGCAGAGGGCCTTGCTTACC
CCTCCCTCACACCATGGCCACCACCACCACCTCAACCACCACCATCATCA
TCATCATCATCATCATCACCATCACAGCTGGCTCCTAGCAGTCAGGACGA
AGGAAAAGCACTACCTACCCGTATTGGGGGGAGAAACGCAGGCCCTATCA
GTCATCCTCCTCGGCCTCCTCCTTGTCACAATTGCCGCCGTTATCTGGGA
GACAAGCGAGCAGCTTTGCCCGTTACCCGGGTGGGCCTGGCTGCGATTCC
TTCGCCTTCATTCATTGTGGCATCTCAGCGTAGGCTATGGCGTCTATTTG
CTCCTCCAGGCCGCAGCCCTTCTCTCTGGACCCTGTCTTTATGGGAAATG
GTCCACGTTCGACAACCGGCACACGCGCTATTCGTGGGTTAATACTTTCT
TTCCCCGCGTTGTGTACATGAATTGTGTGTGTCAGGCGGATGGCGGGGAG
GGAGGGAGGGAGGAAGGGGAGGAAGAGGATGAGCTGTGGGTGGTGTCCAT
GAGGTGTGGACTGGAGAGAAAGGTTGGAAGAGGGTGGGGGGGAGGGGGGA
AGCGGTGGGAGATGCCCGTGCAAAAGAGAGGAGAAGGAAGAGGAGGAGGC
GATGGTTGGAGGGGACGTTGCGACAGCGCCAGTAGCACCACCACCAGCAA
TACGGAGTGTGAGACGGCGTGGGCCTCTGCTTCTTCTTCCTCCTTACCCT
CAGTGTCCTCGTCGTCGGTGGAAGAGGGGAAGAATGATTCGAAGATTTGA

Synonyms

Publications