NO26G01220, NO26G01220 (gene) Nannochloropsis oceanica

Overview
NameNO26G01220
Unique NameNO26G01220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1015
Alignment locationchr26:395476..396490 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:395476..396490 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
Homology
BLAST of NO26G01220 vs. NCBI_GenBank
Match: EWM23165.1 (hypothetical protein Naga_100043g17 [Nannochloropsis gaditana])

HSP 1 Score: 125.6 bits (314), Expect = 1.500e-25
Identity = 63/100 (63.00%), Postives = 75/100 (75.00%), Query Frame = 0
Query:   63 LEQASSTLGYLKMVTPKRRIGATANASSGDGGEGRATGGRTYLVYKDGEGRVTEEAARRDKLAYSNWDGSNMDPDNVRRHQHQLSRMGFRNNRHAKGGIF 163
            +EQASS+LGYL+M+TPKR    + +    D   G  + GRTY+VYKDG G V+ E   R+K AYSNWDGS+MDPD VRRHQHQL RMGFR+N HAKGGIF
Sbjct:    1 MEQASSSLGYLRMITPKR--WKSLHTGDSDAMGGAKSAGRTYIVYKDGGGSVSREPLPREKSAYSNWDGSSMDPDAVRRHQHQLRRMGFRDNTHAKGGIF 98          
BLAST of NO26G01220 vs. NCBI_GenBank
Match: GAX99351.1 (Hypothetical protein PINS_007196 [Pythium insidiosum])

HSP 1 Score: 72.4 bits (176), Expect = 1.500e-9
Identity = 53/152 (34.87%), Postives = 78/152 (51.32%), Query Frame = 0
Query:    1 MATPSSAAAVAASSTNALRVYRRLLGMAKNLPQD-KQASALEQIRQGFREHAGETDAQRVSKLLEQASSTLGYLKMVTPKRRIGATANASSGDGGEGRATGGRTYLVYKDGEGRVTEEAARRDKLAYSNWDGSNMDPDNVRRHQHQLSRMGF 152
            M TPSSA A          +Y++LL +AK++P D K+ S ++QIR  FR H   +D + +S LL++A S +G+LK+VTP+                 R+  GRT +VY  GE RV  ++   +   Y   D  +    N+RRH   L R  F
Sbjct:    1 MTTPSSAVA------ELRPIYKKLLRLAKSIPDDAKRESTVQQIRSEFRSHLDSSDPKEISALLQRAQSKIGFLKIVTPR----------------ARSDSGRTNIVYMKGE-RVDGDSVSEEGARYKTADFES----NLRRHNQLLRRQHF 125          
BLAST of NO26G01220 vs. NCBI_GenBank
Match: CCA17542.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 69.7 bits (169), Expect = 9.500e-9
Identity = 47/132 (35.61%), Postives = 72/132 (54.55%), Query Frame = 0
Query:   20 VYRRLLGMAKNLPQDKQASALEQIRQGFREHAGETDAQRVSKLLEQASSTLGYLKMVTPKRRIGATANASSGDGGEGRATGGRTYLVYKDGEGRVTEEAARRDKLAYSNWDGSNMDPDNVRRHQHQLSRMGF 152
            +Y+RL+ +AK+LP +KQA+ L  IR  FR+H   +D  ++S+LLE+A ST+GYLK+VTP +R          D G  R        ++KDGE R+ E     ++  +   D      + ++RH   L R  F
Sbjct:    7 IYKRLIRLAKSLPAEKQAATLLNIRTEFRKHRDISDPTQLSQLLERAQSTIGYLKIVTPHKR---------SDSGVKR-------FMFKDGE-RIEENLKASERARFKVQDIG----EGLKRHHQLLRRQHF 117          
BLAST of NO26G01220 vs. NCBI_GenBank
Match: GAX99350.1 (Hypothetical protein PINS_007195 [Pythium insidiosum])

HSP 1 Score: 69.3 bits (168), Expect = 1.200e-8
Identity = 52/152 (34.21%), Postives = 77/152 (50.66%), Query Frame = 0
Query:    1 MATPSSAAAVAASSTNALRVYRRLLGMAKNLPQ-DKQASALEQIRQGFREHAGETDAQRVSKLLEQASSTLGYLKMVTPKRRIGATANASSGDGGEGRATGGRTYLVYKDGEGRVTEEAARRDKLAYSNWDGSNMDPDNVRRHQHQLSRMGF 152
            M TPSSA A          +Y++LL +AK++P   K+ S ++QIR  FR H   +D + +S LL++A S +G+LK+VTP+                 R+  GRT +VY  GE RV  ++   +   Y   D  +    N+RRH   L R  F
Sbjct:    1 MTTPSSAVA------ELRPIYKKLLRLAKSIPDVAKRESTVQQIRSEFRSHLDSSDPKEISALLQRAQSKIGFLKIVTPR----------------ARSDSGRTNIVYMKGE-RVDGDSVSEEGARYKTADFES----NLRRHNQLLRRQHF 125          
BLAST of NO26G01220 vs. NCBI_GenBank
Match: XP_002896379.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY67614.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 68.2 bits (165), Expect = 2.800e-8
Identity = 45/136 (33.09%), Postives = 77/136 (56.62%), Query Frame = 0
Query:   20 VYRRLLGMAKNLPQDKQASALEQIRQGFREHAGETDAQRVSKLLEQASSTLGYLKMVTPKRRIGATANASSGDGGEGRATGGRTYLVYKDGEGRVTEEAARRDKLAYSNWDGSNMDPDNVRRHQHQLSRMGFRNNR 156
            +Y++LL +A++LP+ K+ S+++QIR+ FR H   TD + VS L+++A S+L YLK+VTP+    A +N           TG + Y +Y++G+ RV         +  + W   +M+   ++RH   L R  F N +
Sbjct:    7 LYKKLLRLAQSLPEPKRQSSIDQIRRDFRSHGDPTDPKEVSALIQRAQSSLSYLKIVTPR----AESN-----------TGVQRY-IYRNGQ-RVNAAEFEEKGVENARWKMQDME-GGLKRHHQLLQRQYFMNRK 124          
BLAST of NO26G01220 vs. NCBI_GenBank
Match: OEU12649.1 (hypothetical protein FRACYDRAFT_270420 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 68.2 bits (165), Expect = 2.800e-8
Identity = 57/175 (32.57%), Postives = 77/175 (44.00%), Query Frame = 0
Query:   11 AASSTNALRVYRRLLGMAKNLPQD--KQASALEQIRQGFREHAGETDAQRVSKLLEQASSTLGYLKMVTPK-------------------RRIGATANASSGDGGEGRATGGRTYLVYKDGEGRV----TEEAARRDK-LAYSNWDGSNMDPDNVRRHQHQLSRMGFRNNRHAKG 160
            A  S+   + YR +  + K LP++   Q S   QIR  FRE  G TD   +   +++A   L +LKM+TPK                                             VYK+GE R+    +    R  K    SNWDG N+DPD+V++H HQL RMG+ NN HAKG
Sbjct:    4 AIKSSVVRQKYRSMCRLIKRLPEESNNQDSYWSQIRTSFREPLGTTDT-ALEDRIKKADDRLSFLKMITPKLDHNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWVYKNGE-RIEISGSSSTVRDSKGRVISNWDGKNLDPDSVKQHNHQLKRMGYLNNSHAKG 176          
BLAST of NO26G01220 vs. NCBI_GenBank
Match: XP_002675227.1 (predicted protein [Naegleria gruberi] >EFC42483.1 predicted protein [Naegleria gruberi])

HSP 1 Score: 67.4 bits (163), Expect = 4.700e-8
Identity = 40/124 (32.26%), Postives = 63/124 (50.81%), Query Frame = 0
Query:   34 DKQASALEQIRQGFREHAGETDAQRVSKLLEQASSTLGYLKMVTPKRRIGATANASSGDGGEGRATGGRTYLVYKDGEGR------VTEEAARRDKLAYSNWDGSNMDPDNVRRHQHQLSRMGF 152
            +K+ +A+ +IR  FR+   ET+ + + + L++A    GYL M+TPKR    T+              G+T LV  DGE +        +   + +K  +SNW   N+DPD VR+H+  L R  F
Sbjct:   12 EKRVNAINEIRSTFRKFKNETNQEIIQQQLKKAHDKFGYLCMITPKRLHTETSQID-----------GKTQLVKIDGEWKDVNAIGEDDNLTKEEKATWSNWGRGNLDPDQVRKHEQLLKRQHF 124          
BLAST of NO26G01220 vs. NCBI_GenBank
Match: CCI44820.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 67.0 bits (162), Expect = 6.100e-8
Identity = 43/133 (32.33%), Postives = 71/133 (53.38%), Query Frame = 0
Query:   19 RVYRRLLGMAKNLPQDKQASALEQIRQGFREHAGETDAQRVSKLLEQASSTLGYLKMVTPKRRIGATANASSGDGGEGRATGGRTYLVYKDGEGRVTEEAARRDKLAYSNWDGSNMDPDNVRRHQHQLSRMGF 152
            R++++++ +AK+LP +KQA  L  IR  FR+H    D  ++++LLE+A ST+GYLK+VTP +                R+  G  + VYKDGE R+ +     +K  +   D      + ++RH   + R  F
Sbjct:    9 RIFKKMVKLAKSLPVEKQAGTLLNIRAEFRKHRDIRDPIQLAQLLERAQSTIGYLKIVTPHK----------------RSDSGVKHFVYKDGE-RIEKSLQAGEKAKFKVQDME----EGLKRHNQLIRRQYF 120          
BLAST of NO26G01220 vs. NCBI_GenBank
Match: GBG33600.1 (Hypothetical Protein FCC1311_098232 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 67.0 bits (162), Expect = 6.100e-8
Identity = 47/148 (31.76%), Postives = 77/148 (52.03%), Query Frame = 0
Query:    8 AAVAASSTNALRVYRRLLGMAKNLPQDKQASALEQIRQGFREHAGETDAQRVSKLLEQASSTLGYLKMVTPKRRIGATANASSGDGGEGRATGGRTYLVYKDGEGRVTEEAARRDKLAYSNWDGSNMDPDNVRRHQHQLSRMGFRNNR 156
            A   A    AL +Y++LL  A+ LP+ ++A+A +++R  F+ HA E   ++V +LL  A S LGYLK+VTP+    AT               G+  LV +DG+  V   A   D+  +   D +++D D + +H + + R  F + R
Sbjct:    4 AGAGAGRRVALALYKQLLQTARRLPEAQRAAAAQEVRDKFKAHAAEGSPEKVQELLNLAQSKLGYLKIVTPRTSRDAT---------------GKARLVLRDGKW-VEGSARLMDRAPH---DKTSVDADALAKHNYLMERQHFMHRR 132          
BLAST of NO26G01220 vs. NCBI_GenBank
Match: XP_008913013.1 (hypothetical protein PPTG_17126 [Phytophthora parasitica INRA-310] >ETI35288.1 hypothetical protein F443_18349 [Phytophthora parasitica P1569] >ETK75546.1 hypothetical protein L915_17856 [Phytophthora parasitica] >ETL28963.1 hypothetical protein L916_17756 [Phytophthora parasitica] >ETL82214.1 hypothetical protein L917_17585 [Phytophthora parasitica] >ETM35410.1 hypothetical protein L914_17668 [Phytophthora parasitica] >ETN01698.1 hypothetical protein PPTG_17126 [Phytophthora parasitica INRA-310] >ETO64029.1 hypothetical protein F444_18368 [Phytophthora parasitica P1976] >ETP05098.1 hypothetical protein F441_18225 [Phytophthora parasitica CJ01A1] >ETP33257.1 hypothetical protein F442_18177 [Phytophthora parasitica P10297] >KUG01019.1 hypothetical protein AM587_10015970 [Phytophthora nicotianae])

HSP 1 Score: 65.1 bits (157), Expect = 2.300e-7
Identity = 42/136 (30.88%), Postives = 72/136 (52.94%), Query Frame = 0
Query:   20 VYRRLLGMAKNLPQDKQASALEQIRQGFREHAGETDAQRVSKLLEQASSTLGYLKMVTPKRRIGATANASSGDGGEGRATGGRTYLVYKDGEGRVTEEAARRDKLAYSNWDGSNMDPDNVRRHQHQLSRMGFRNNR 156
            +Y++LL +A++LP+ K+ S+++QIR+ FR H   TD Q VS L+++A S+L YLK+VTP+                  +  G    +Y++G+ RV  +         + W   +M+   +RRH   L R  F + +
Sbjct:   11 LYKKLLRLAQSLPEPKRQSSIDQIRRDFRNHGDLTDPQEVSALIQRAQSSLSYLKIVTPR----------------AESNMGVQRYIYRNGQ-RVNADEFEEKGEENARWKTQDME-GGLRRHHQLLRRQYFLDRK 128          
The following BLAST results are available for this feature:
BLAST of NO26G01220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 14
Match NameE-valueIdentityDescription
EWM23165.11.500e-2563.00hypothetical protein Naga_100043g17 [Nannochlorops... [more]
GAX99351.11.500e-934.87Hypothetical protein PINS_007196 [Pythium insidios... [more]
CCA17542.19.500e-935.61conserved hypothetical protein [Albugo laibachii N... [more]
GAX99350.11.200e-834.21Hypothetical protein PINS_007195 [Pythium insidios... [more]
XP_002896379.12.800e-833.09conserved hypothetical protein [Phytophthora infes... [more]
OEU12649.12.800e-832.57hypothetical protein FRACYDRAFT_270420 [Fragilario... [more]
XP_002675227.14.700e-832.26predicted protein [Naegleria gruberi] >EFC42483.1 ... [more]
CCI44820.16.100e-832.33unnamed protein product [Albugo candida][more]
GBG33600.16.100e-831.76Hypothetical Protein FCC1311_098232 [Aurantiochytr... [more]
XP_008913013.12.300e-730.88hypothetical protein PPTG_17126 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR046ngnoR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005949NSK005949Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G01220.1NO26G01220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|177744gene_7950Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100043g17gene7289Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G01220.1NO26G01220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G01220 ID=NO26G01220|Name=NO26G01220|organism=Nannochloropsis oceanica|type=gene|length=1015bp
ATGGCCACCCCGTCCTCTGCCGCTGCTGTCGCTGCTTCGAGTACAAATGC
TTTGAGGGTCTACCGTCGCTTGTTGGGCATGGCGAAAAACTTGCCGCAGG
ACAAGCAGGCGTCGGCACTTGAGCAAATACGTCAGGGCTTTCGAGAGCAT
GCAGGCGAGACGGACGCGCAAAGgtgagtgagtgtcgaaggccgggggag
ggggactatcaggggacagactcgggcacaagatgccgggggacaatgcg
acggtagttttcattcagatacggcagtggtatttgttgaaggtactagt
taatctcccctctatatgcgggggcttactaccaccgagcttcccccaca
gatccttttgtacgaaggtgagaaacggatccataagggtcggtagctag
ctcaatccttcctagcgccgcgaggattaaggaagctcgaattcgtcgac
ggggacagcgattcactttttgttgtttttcctaactcactccaacggtt
ttggcatcaaaataaggggaagaattcctcaatttttatcaccataaatg
agaggactgatagcctcgaggagctcctacgaccacaaacgaatagatat
ctatcattatgagaaaatagaaggcgctcgaaaatatctctcgactttac
gcatgcctaagactacctgccttctttccttcccccccccggaaaacagG
GTGAGCAAGCTGTTGGAGCAGGCTTCTTCTACGCTCGGGTATCTAAAGAT
GGTGACTCCAAAGCGAAGGATAGGTGCCACTGCAAACGCCTCCTCGGGCG
ACGGCGGAGAAGGAAGAGCGACAGGGGGACGGACCTATCTGGTGTACAAG
GACGGCGAGGGGCGGGTAACGGAAGAGGCTGCGCGACGGGATAAATTGGC
TTATTCCAACTGGGACGGCAGCAACATGGACCCCGACAATGTTCGTCGGC
ACCAACACCAACTCAGCCGGATGGGGTTCCGGAATAACAGACATGCCAAG
GGCGGCATCTTTTGA
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protein sequence of NO26G01220.1

>NO26G01220.1-protein ID=NO26G01220.1-protein|Name=NO26G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MATPSSAAAVAASSTNALRVYRRLLGMAKNLPQDKQASALEQIRQGFREH
AGETDAQRVSKLLEQASSTLGYLKMVTPKRRIGATANASSGDGGEGRATG
GRTYLVYKDGEGRVTEEAARRDKLAYSNWDGSNMDPDNVRRHQHQLSRMG
FRNNRHAKGGIF*
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Synonyms
Publications