NO26G01020, NO26G01020 (gene) Nannochloropsis oceanica

Overview
NameNO26G01020
Unique NameNO26G01020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2797
Alignment locationchr26:337023..339819 -

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Properties
Property NameValue
DescriptionRna polymerase sigma factor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr26genomechr26:337023..339819 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006352DNA-templated transcription, initiation
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
Vocabulary: INTERPRO
TermDefinition
IPR013325RNA_pol_sigma_r2
IPR013324RNA_pol_sigma_r3_r4
IPR007627RNA_pol_sigma70_r2
IPR007630RNA_pol_sigma70_r4
IPR007624RNA_pol_sigma70_r3
IPR000943RNA_pol_sigma70
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO26G01020 vs. NCBI_GenBank
Match: EWM23140.1 (rna polymerase sigma factor [Nannochloropsis gaditana])

HSP 1 Score: 751.9 bits (1940), Expect = 1.600e-213
Identity = 460/670 (68.66%), Postives = 494/670 (73.73%), Query Frame = 0
Query:    1 MAQKDDAQPPTLQGSTTAQ---QHQQLPHPSCSITTPSGPNPGAHGSRKRQHSMHRISALGACCLVGLASC-YTTAFVLPSGGLSGYSTNRASRHAPHIGSSQHPPSTRTLLEQQRISSGPS--FSLSSTANDN--------AATNTGPVT--------VXXXXXXXXXXXXSAMXXXGIPPRGRPGKDGVPLNPPNKGSGKAPLRGDEEVDLARKMQVRVAYIRVKYLAREALGRDPTHREWADVLGISDKALAEALTAAADAKTTMIRANMRLVMSIVRRYLSRGVQLKDLLQEGMNGLTRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVHVHDLLNQIGRAERELSAQLGRQPTEAEIAARVDIPQRKLQFLRERTQHTLSMDATRPSGGRKSGSGIGDEVRVSDSISDSEPLQDVKADEAYMREQVERLLDSLNPREADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHKIKQPYRTQHHKLRDNGRGGGAATAGKGSSQGHAGSHLSISVFGDFVGAVENGNGLKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVVASPGTLGGVGSRGRYRKRGVVGGAGDDEGILXXXXXXXXXXXXXXXXXXLLAKAVPS-MSSHNETLVALP 648
            M+  D+A+       +TAQ   Q QQ PHP  S  TP+  + G    R+R   M RI  LGACCLV LASC   ++FV+P+ GL+G S + A R      S  HPP+ RT+LEQQRI       FSL+ST ++N         A+NTGP++         XXXXXXXXXXX SAM   G+ PRGRPGKDGVPLNPPNKGSGKAPLRG+EEVDLARKMQVRVAYIRVKYLAREALGRDPTHREWADVLGISD+ALAEALTAAADAKTTMIRANMRLVMSIVRRYLSRGVQLKDLLQEGMNGLTRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVHVHDLLNQIGRAERELS+QLGRQPTEAEIAARVDIPQRKLQFLRERTQHTLSMDATRPSGGRKSGSGIGDEVRVSDSISD+EPLQDVKADEAYMREQVERLLDSLNPREADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHKIKQPYR  HHKLRDNGRGGG++            SHLSISVFGDFVG VE G GL                                                   A      G GSRG+YRKRGV+G   ++EG+L            XXXXXX  +K VPS MSSHNETL A P
Sbjct:    1 MSLSDEAELADNNCRSTAQQLSQAQQQPHPQTSGITPADSSSGFSSKRQRHKGMKRILILGACCLVTLASCGSVSSFVVPNHGLAGSSISNA-RRTSLPSSIYHPPNFRTVLEQQRIGEASPFLFSLASTQSNNPAIGATNDPASNTGPMSXXXXXXXXXXXXXXXXXXXXISAMPTGGMSPRGRPGKDGVPLNPPNKGSGKAPLRGEEEVDLARKMQVRVAYIRVKYLAREALGRDPTHREWADVLGISDRALAEALTAAADAKTTMIRANMRLVMSIVRRYLSRGVQLKDLLQEGMNGLTRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVHVHDLLNQIGRAERELSSQLGRQPTEAEIAARVDIPQRKLQFLRERTQHTLSMDATRPSGGRKSGSGIGDEVRVSDSISDAEPLQDVKADEAYMREQVERLLDSLNPREADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHKIKQPYRVNHHKLRDNGRGGGSSAXXXXXXXXXXXSHLSISVFGDFVGVVEKGGGLHSGGVLAVEEEVMRGSGGAKQ-----------------------------TAVSKNKEGAGSRGKYRKRGVLGARDEEEGLL----VGVGARRGXXXXXXAASKMVPSMMSSHNETLAAFP 636          
BLAST of NO26G01020 vs. NCBI_GenBank
Match: XP_009036174.1 (hypothetical protein AURANDRAFT_53467 [Aureococcus anophagefferens] >EGB09048.1 hypothetical protein AURANDRAFT_53467 [Aureococcus anophagefferens])

HSP 1 Score: 278.1 bits (710), Expect = 7.000e-71
Identity = 154/307 (50.16%), Postives = 211/307 (68.73%), Query Frame = 0
Query:  181 APLRGDEEVDLARKMQVRVAYIRVKYLAREALGRDPTHREWADVLGISDKA-----LAEALTAAADAKTTMIRANMRLVMSIVRRYLSRGVQLKDLLQEGMNGLTRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVHVHDLLNQIGRAERELSAQLGRQPTEAEIAARVDIPQRKLQFLRERTQHTLSMDAT-RPSG-GRKSGS-GIGDEVRVSDSISDSEPLQDVKADEAYMREQVERLL-DSLNPREADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHKIKQPYR 479
            A L  DEE  LAR++Q    +  ++     +LGR+PT  EW     IS  A       +A      AK  MI AN+RLV+SI +RY  RG+  +D++QEG  GLTRA EKFDP++GFKFSTYATWWIKQ+VMRA+ADQSR +RLPVHVHD L  + +  R+L A+LGR+ T+ E+A ++D+   K+ +LR   + T+SMDAT R SG G  +G+ G G+E ++SD+++D+  L D +A+   ++  +  LL  +L+ RE DVV++R+GL DG+ RTLEEIG  F +TRERVRQIEARALHK++QPYR
Sbjct:  147 ALLSSDEEKALARRVQRLCTWEGIRANLTASLGREPTELEWGAAARISRAACENGSFEKARKKCLKAKAAMINANLRLVVSISKRYQHRGLHFQDVIQEGTFGLTRAVEKFDPEKGFKFSTYATWWIKQAVMRAIADQSRTIRLPVHVHDQLQSMKKVTRDLGAELGRECTDEELAGKLDLATTKMDWLRSCERQTMSMDATVRVSGKGSSAGTGGAGNEAKLSDNLADAAALPDERAETKSLQSDIHGLLRTALSDRECDVVRLRFGLDDGKARTLEEIGTVFSITRERVRQIEARALHKLRQPYR 453          
BLAST of NO26G01020 vs. NCBI_GenBank
Match: CBN79861.1 (chloroplast RNA-polymerase sigma factor precursor [Ectocarpus siliculosus])

HSP 1 Score: 266.9 bits (681), Expect = 1.600e-67
Identity = 142/304 (46.71%), Postives = 208/304 (68.42%), Query Frame = 0
Query:  183 LRGDEEVDLARKMQVRVAYIRVKYLAREALGRDPTHREWADVLGISDKALAEALTAAADAKTTMIRANMRLVMSIVRRYLSRGVQLKDLLQEGMNGLTRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVHVHDLLNQIGRAERELSAQLGRQPTEAEIAARVDIPQRKLQFLRERTQHTLSMDATRPSGGRKSGSGIGDEVRVSDSISDSEPLQDVKADEAYMREQVERLLDSLNPREADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHKIKQPYRTQHHKLRD 487
            L+  EE+ L R++Q  V+Y   +   +   G +P+  EWA  LG+  + L + L+ A+ AK  M+ AN+RLV+S+ +RY  + +  +DL+QEG  GL +AAEKFDP+RGFKFSTYATWWIKQS+MR +ADQSR++RLPVHVHD LN++ +A  E++ + G+ PT+ E+A  +++   ++Q+ R+  Q TLSM+A R    + S S  G +V +   +S  E   D +A    M+++V  LL +L+ RE +VVK R+GL     RTLEE+G  FR+TRERVRQIEARALHK++QPYR  ++++RD
Sbjct:   64 LKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREELVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKATLEMTDKNGKLPTDDELAEHLEVSAVRIQYYRDAAQATLSMEAPRNIASKTSTSP-GKKVEMGQGVSGPEKTPDKQAQSDVMKQKVTELLMTLSIREQEVVKARFGLGGALPRTLEEVGRDFRLTRERVRQIEARALHKLRQPYR--NYRVRD 364          
BLAST of NO26G01020 vs. NCBI_GenBank
Match: XP_001713512.1 (RNA-polymerase sigma factor [Guillardia theta] >AAK39807.1 RNA-polymerase sigma factor (nucleomorph) [Guillardia theta])

HSP 1 Score: 264.6 bits (675), Expect = 8.000e-67
Identity = 142/298 (47.65%), Postives = 204/298 (68.46%), Query Frame = 0
Query:  183 LRGDEEVDLARKMQVRVAYIRVKYLAREALGRDPTHREWADVLGISD-KALAEALTAAADAKTTMIRANMRLVMSIVRRYLSRGVQLKDLLQEGMNGLTRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVHVHDLLNQIGRAERELSAQLGRQPTEAEIAARVDIPQRKLQFLRERTQHTLSMDATRPSGGRKSGSGIGDEVRVSDSISDSEPLQDVKADEAYMREQVERLLDSLNPREADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHKIKQPYRT 480
            LR DEE+ LAR++   + +  VK   R+ L R+PT+ EW     +SD +     L  A  AK  M+ AN+RLV+SI +RY++RG+ L+DL+QEG  GL RAAEKFD ++GFKFSTYATWW+KQ+V RA+AD SR +RLPVH++D ++ I +  R L+ ++GR PTE EIA R+D+   KL+ + +  Q TLS++  RP           D  ++SD I   +   +   +++ +R+ +E +++SL+PRE DVV+MRYGL DG+ +TLEEIG  F VTRERVRQIEA+A+ K++QPYR+
Sbjct:  128 LRPDEEIQLAREISQLLHWEHVKISLRDKLRREPTNSEWTAACKVSDVRKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRNLNIEIGRSPTEEEIAKRMDMSVEKLRNVLQSAQPTLSLE--RPL------KNDDDTSQLSDFIEADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRS 417          
BLAST of NO26G01020 vs. NCBI_GenBank
Match: BAB87262.1 (RNA polymerase sigma factor [Guillardia theta])

HSP 1 Score: 263.5 bits (672), Expect = 1.800e-66
Identity = 142/298 (47.65%), Postives = 203/298 (68.12%), Query Frame = 0
Query:  183 LRGDEEVDLARKMQVRVAYIRVKYLAREALGRDPTHREWADVLGISD-KALAEALTAAADAKTTMIRANMRLVMSIVRRYLSRGVQLKDLLQEGMNGLTRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVHVHDLLNQIGRAERELSAQLGRQPTEAEIAARVDIPQRKLQFLRERTQHTLSMDATRPSGGRKSGSGIGDEVRVSDSISDSEPLQDVKADEAYMREQVERLLDSLNPREADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHKIKQPYRT 480
            LR +EE+ LAR++   + +  VK   RE L R+PT  EW     +SD K     L  A  AK  M+ AN+RLV+SI +RY++RG+ L+DL+QEG  GL RAAEKFD ++GFKFSTYATWW+KQ+V RA+AD SR +RLPVH++D ++ I +  R L+ ++GR PTE EIA ++D+   KL+ + +  Q TLS++  RP           D  ++SD I   +   +   +++ +R+ +E +++SL+PRE DVV+MRYGL DG+ +TLEEIG  F VTRERVRQIEA+A+ K++QPYR+
Sbjct:  145 LRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSDVKKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLE--RPL------KNDDDASQLSDFIEADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRS 434          
BLAST of NO26G01020 vs. NCBI_GenBank
Match: XP_001712214.1 (rpoD [Hemiselmis andersenii] >ABW97889.1 rpoD [Hemiselmis andersenii])

HSP 1 Score: 263.1 bits (671), Expect = 2.300e-66
Identity = 142/298 (47.65%), Postives = 203/298 (68.12%), Query Frame = 0
Query:  183 LRGDEEVDLARKMQVRVAYIRVKYLAREALGRDPTHREWADVLGISD-KALAEALTAAADAKTTMIRANMRLVMSIVRRYLSRGVQLKDLLQEGMNGLTRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVHVHDLLNQIGRAERELSAQLGRQPTEAEIAARVDIPQRKLQFLRERTQHTLSMDATRPSGGRKSGSGIGDEVRVSDSISDSEPLQDVKADEAYMREQVERLLDSLNPREADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHKIKQPYRT 480
            LR +EE+ LAR++   + +  VK   RE L R+PT  EW     +SD K     L  A  AK  M+ AN+RLV+SI +RY++RG+ L+DL+QEG  GL RAAEKFD ++GFKFSTYATWW+KQ+V RA+AD SR +RLPVH++D ++ I +  R L+ ++GR PTE EIA ++D+   KL+ + +  Q TLS++  RP           D  ++SD I   +   +   +++ +R+ +E +++SL+PRE DVV+MRYGL DG+ +TLEEIG  F VTRERVRQIEA+A+ K++QPYR+
Sbjct:  145 LRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSDVKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLE--RPL------KNDDDASQLSDFIEADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRS 434          
BLAST of NO26G01020 vs. NCBI_GenBank
Match: AFP65672.1 (RNA-polymerase sigma factor [Chroomonas mesostigmatica CCMP1168])

HSP 1 Score: 263.1 bits (671), Expect = 2.300e-66
Identity = 142/298 (47.65%), Postives = 203/298 (68.12%), Query Frame = 0
Query:  183 LRGDEEVDLARKMQVRVAYIRVKYLAREALGRDPTHREWADVLGISD-KALAEALTAAADAKTTMIRANMRLVMSIVRRYLSRGVQLKDLLQEGMNGLTRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVHVHDLLNQIGRAERELSAQLGRQPTEAEIAARVDIPQRKLQFLRERTQHTLSMDATRPSGGRKSGSGIGDEVRVSDSISDSEPLQDVKADEAYMREQVERLLDSLNPREADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHKIKQPYRT 480
            LR +EE+ LAR++   + +  VK   RE L R+PT  EW     +SD K     L  A  AK  M+ AN+RLV+SI +RY++RG+ L+DL+QEG  GL RAAEKFD ++GFKFSTYATWW+KQ+V RA+AD SR +RLPVH++D ++ I +  R L+ ++GR PTE EIA ++D+   KL+ + +  Q TLS++  RP           D  ++SD I   +   +   +++ +R+ +E +++SL+PRE DVV+MRYGL DG+ +TLEEIG  F VTRERVRQIEA+A+ K++QPYR+
Sbjct:  148 LRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSDVKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLE--RPL------KNDDDASQLSDFIEADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRS 437          
BLAST of NO26G01020 vs. NCBI_GenBank
Match: XP_003239821.1 (RNA-polymerase sigma factor [Cryptomonas paramecium] >AEA38923.1 RNA-polymerase sigma factor (nucleomorph) [Cryptomonas paramecium])

HSP 1 Score: 261.9 bits (668), Expect = 5.200e-66
Identity = 143/302 (47.35%), Postives = 202/302 (66.89%), Query Frame = 0
Query:  183 LRGDEEVDLARKMQVRVAYIRVKYLAREALGRDPTHREWADVLGISD-KALAEALTAAADAKTTMIRANMRLVMSIVRRYLSRGVQLKDLLQEGMNGLTRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVHVHDLLNQIGRAERELSAQLGRQPTEAEIAARVDIPQRKLQFLRERTQHTLSMDATRPSGGRKSGSGIGDEVRVSDSISDSEPLQDVKADEAYMREQVERLLDSLNPREADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHKIKQPYRTQHHK 484
            L+ +EE+ LAR++   + +  +K   +E LGR+PT  EW+    ISD +     L  +  AK  MI AN+RLV+SI +RY +RG+ L+DL+QEG  GL RA EKFD ++GFKFSTYATWWIKQSV RA+AD SR +RLPVH++D L+ I +  R L+ +LGR PTE EIA ++D+   KL+ + +  Q TLS++        K     GD  ++SD I   +   D   +++ +R+ +  +++SL+ RE DV++MRYGL DG+ RTLEEIG  F VTRERVRQIEA+A+ K++QPYR+   K
Sbjct:   99 LKPEEEIQLAREISQLLQWEHIKVFLKEKLGREPTALEWSAACKISDVQKFKTVLYNSRKAKERMIAANLRLVVSIAKRYSNRGMSLQDLVQEGSLGLIRATEKFDSEKGFKFSTYATWWIKQSVSRAIADHSRTIRLPVHLYDTLSAIKKTTRILTIELGRSPTEEEIACKMDVTVDKLRSVLQSAQPTLSLE--------KPIKNDGDTAQLSDFIEADQESPDEHVEKSMLRDDLRDVINSLSLRERDVIRMRYGLDDGKIRTLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSSIFK 392          
BLAST of NO26G01020 vs. NCBI_GenBank
Match: WP_006197858.1 (RNA polymerase sigma factor RpoD [Nodularia spumigena] >EAW43972.1 RNA polymerase sigma factor [Nodularia spumigena CCY9414] >AHJ31184.1 Group 2 RNA polymerase sigma factor RNA polymerase sigma factor RpoD [Nodularia spumigena CCY9414] >KZL50863.1 RNA polymerase subunit sigma [Nodularia spumigena CENA596] >AVZ29912.1 RNA polymerase primary sigma factor [Nodularia spumigena UHCC 0039])

HSP 1 Score: 261.5 bits (667), Expect = 6.700e-66
Identity = 137/296 (46.28%), Postives = 208/296 (70.27%), Query Frame = 0
Query:  183 LRGDEEVDLARKMQVRVAYIRVKYLAREALGRDPTHREWADVLGISDKALAEALTAAADAKTTMIRANMRLVMSIVRRYLSRGVQLKDLLQEGMNGLTRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVHVHDLLNQIGRAERELSAQLGRQPTEAEIAARVDIPQRKLQFLRERTQHTLSMDATRPSGGRKSGSGIGDEVRVSDSISDSEPLQDVKADEAYMREQVERLLDSLNPREADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHKIKQPYR 479
            LR DEE++LARK+   +   RV+   +E L R+P +REWA+ + I   A    L     AK  M+++N+RLV+SI ++Y++RG+  +DL+QEG  GL RAAEKFD ++G+KFSTYATWWI+Q++ RA+ADQSR +RLPVH+++ +++I +  + LS ++GR+PTE EIA R+++   KL+F+ +  Q  +S++      G++  S +GD +      SD E  +D +  +  +RE +E++LDSL+PRE DV+++RYGL DG+ +TLEEIG  F VTRER+RQIEA+AL K++ P R
Sbjct:   96 LRADEEIELARKIADLLELERVRDRLQEQLEREPEYREWAEAVQIPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI---GKEEDSRLGDFIE-----SDGETPED-QVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNR 382          
BLAST of NO26G01020 vs. NCBI_GenBank
Match: WP_089090975.1 (RNA polymerase sigma factor RpoD [Nodularia sp. NIES-3585] >GAX35535.1 RNA polymerase sigma factor RpoD [Nodularia sp. NIES-3585])

HSP 1 Score: 260.8 bits (665), Expect = 1.100e-65
Identity = 136/296 (45.95%), Postives = 208/296 (70.27%), Query Frame = 0
Query:  183 LRGDEEVDLARKMQVRVAYIRVKYLAREALGRDPTHREWADVLGISDKALAEALTAAADAKTTMIRANMRLVMSIVRRYLSRGVQLKDLLQEGMNGLTRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVHVHDLLNQIGRAERELSAQLGRQPTEAEIAARVDIPQRKLQFLRERTQHTLSMDATRPSGGRKSGSGIGDEVRVSDSISDSEPLQDVKADEAYMREQVERLLDSLNPREADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHKIKQPYR 479
            LR DEE++LARK+   +   RV+   +E L R+P +REWA+ + +   A    L     AK  M+++N+RLV+SI ++Y++RG+  +DL+QEG  GL RAAEKFD ++G+KFSTYATWWI+Q++ RA+ADQSR +RLPVH+++ +++I +  + LS ++GR+PTE EIA R+++   KL+F+ +  Q  +S++      G++  S +GD +      SD E  +D +  +  +RE +E++LDSL+PRE DV+++RYGL DG+ +TLEEIG  F VTRER+RQIEA+AL K++ P R
Sbjct:   96 LRADEEIELARKIADLLELERVRDRLQEQLEREPEYREWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI---GKEEDSRLGDFIE-----SDGETPED-QVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNR 382          
The following BLAST results are available for this feature:
BLAST of NO26G01020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM23140.11.600e-21368.66rna polymerase sigma factor [Nannochloropsis gadit... [more]
XP_009036174.17.000e-7150.16hypothetical protein AURANDRAFT_53467 [Aureococcus... [more]
CBN79861.11.600e-6746.71chloroplast RNA-polymerase sigma factor precursor ... [more]
XP_001713512.18.000e-6747.65RNA-polymerase sigma factor [Guillardia theta] >AA... [more]
BAB87262.11.800e-6647.65RNA polymerase sigma factor [Guillardia theta][more]
XP_001712214.12.300e-6647.65rpoD [Hemiselmis andersenii] >ABW97889.1 rpoD [Hem... [more]
AFP65672.12.300e-6647.65RNA-polymerase sigma factor [Chroomonas mesostigma... [more]
XP_003239821.15.200e-6647.35RNA-polymerase sigma factor [Cryptomonas parameciu... [more]
WP_006197858.16.700e-6646.28RNA polymerase sigma factor RpoD [Nodularia spumig... [more]
WP_089090975.11.100e-6545.95RNA polymerase sigma factor RpoD [Nodularia sp. NI... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL050nonsL050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL049nonsL049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR037ncniR037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR046ngnoR046Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR045ngnoR045Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005966NSK005966Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO26G01020.1NO26G01020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|176897gene_7927Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100043g41gene7309Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO26G01020.1NO26G01020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO26G01020 ID=NO26G01020|Name=NO26G01020|organism=Nannochloropsis oceanica|type=gene|length=2797bp
ATGGCTCAGAAAGACGACGCGCAGCCACCCACGCTGCAGGGCAGCACCAC
GGCACAGCAACACCAACAGCTACCACATCCTTCCTGCAGTATCACAACTC
CTTCCGGTCCCAATCCCGGTGCCCACGGCAGCAGAAAGAGGCAACACAGC
ATGCATAGAATTTCCGCCCTGGGGGCCTGCTGCCTGGTGGGCCTGGCCTC
TTGCTACACCACAGCCTTTGTCCTCCCCAGCGGAGGTCTCAGCGGCTACA
GCACCAACAGGGCATCAAGACACGCACCTCACATCGGCAGTAGCCAACAT
CCCCCCTCCACACGCACTCTCCTCGAGCAGCAAAGAATAAGTAGTGGGCC
CTCCTTCTCCCTATCCTCCACGGCGAATGACAACGCAGCCACGAACACCG
GCCCCGTGACTGTAGCGGCAGCCGCCGCCACCGCTGCACCAAACCCTGTT
TCAGCTATGCCTATAAAAGGTATACCTCCGCGAGGCCGACCAGGGAAGGA
CGGCGTGCCTCTCAACCCTCCCAATAAAGGCTCAGGCAAGGCCCCCCTTC
GCGGCGACGAAGAGGTGGACTTAGCTCGCAAGATGCAGGTTAGGGTGGCG
TATATCCGAGTTAAGTACCTGGCGCGCGAGGCGTTGGGACGAGATCCGAC
TCACAGGGAGTGGGCAGACGTGCTTGGTATTTCGGATAAAGCGCTTGCAG
AAGCCTTGACGGCGGCTGCTGATGCCAAGACGACCATGATCCGCGCCAAT
ATGCGTTTAGTCATGTCGATTGTACGTCGTTATCTCTCTAGAGGGGTCCA
ATTGAAGGATTTGCTTCAAGAAGGGATGAATGGACTGACACGTGCGGCAG
AGAAATTCGATCCTGACCGCGGGTTTAAATTTTCAACGTACGCTACGTGG
TGGATCAAGCAGAGCGTCATGCGCGCCGTTGCTGATCAATCGCGTGTTGT
CCGTCTCCCCGTCCACGTCCACGATTTACTCAATCAAATCGGGAGGGCTG
AACGTGAGCTAAGCGCGCAATTGGGCAGGCAGCCGACCGAGGCGGAGATT
GCTGCGAGGGTGGACATTCCTCAACGGAAGCTGCAGTTTCTGCGAGAAAG
GACCCAGCATACCTTATCCATGGACGCGACCAGGCCTTCAGGCGGGAGAA
AGAGTGGGTCTGGGATAGGGGACGAGGTGCGGGTAAGCGACAGTATTTCG
GACTCGGAGCCTTTGCAGGACGTCAAGGCGGATGAGGCGTACATGCGTGA
GCAGGTGGAACGGCTGCTTGACTCCTTGAATCCGCGGGAGGCAGACGTGG
TTAAGATGAGGTATGGCCTTGTAGATGGGCAACAGCGGACTCTGGAGGAG
ATAGGAGTGGCATTTCGAGTGACGCGAGAAAGAGTGAGGCAGATAGAGGC
GAGGGCTTTGCATAAGATCAAGCAGCCGTACCGCACGCAGCATCATAAAT
TGAGGGATAATGGACGCGGAGGAGGCGCGGCCACAGCGGGGAAGGGGAGT
AGCCAGGGGCATGCTGGAAGCCACTTGTCAATCTCGGTGTTTGGTGACTT
TGTGGGGGCGGTGGAGAATGGAAATGGATTGAAAGGTGGGGGGGCTCTGG
TGGTGGAGGAGGAGATGGTGGTGAGTGTCCGAAGGAGCACCAGCAGCACC
AGTAGGAGTAGAAGCAGTAGCAGTAGCAGTAGTAGTAGTAGTAGTAGTGA
TAATAGTGGTAGCACTAGTAAGACGCCGGTGGTGGCTTCGCCGGGCACAT
TGGGAGGGGTGGGCTCGAGAGGTCGGTACCGGAAGAGGGGGGTGGTGGGC
GGTGCGGGGGATGACGAGGGGATATTGGTAGGGGTTGGGGCGGGGAGGAG
GGGGAGGGGGAGGGGAGCCGGAGCCGGAGGCCTGCTGGCGAAAGCAGTAC
CGAGCATGAGCTCGCATAATGAGACGTTGGTTGCTCTGCCTTGAATTTGA
AGGAAGGAAGGAAGGAGGGAGGGAGTGGATGAGATACGCATGAAGATAAA
AGAAGGAAAAGACGAGAAGTGGAGTATAGAGAACAGAACGAGACACGCGC
CTTTCCTCGGGTTAAGACATCGGGGAGAGGACTCGATGTGTCGGTAAGGG
TAGACATGAGTCAGACACACAGGAAGAGAGTTGCGAAAAATACAAGAGCT
ATGGCGACATCAAAATGGAATAGCAGCAGTAGCAGCAGCAGCAACGACAA
ACAGCAACCACACCTAATACCACAACTACGTTCACAACGTCAACATCACA
AACCACAATTACTTCTACAATCACAACATCAACGACCACGAATACAACAA
CATAAAACAACATCACAGAAGAGAGCTTGTGGGAACGGTTGAGTATTTTC
CAACACAGGCGGTGGGAGGGGGAGGGCAGTCTGGGTTGATTTGTCAGAGA
GAAGGCCATTTCGTCGCCCAAACAAATATTATGAATAATCTACAACACAC
CCACGCACACTTTGTTATCGAACGAAAGCAAAAATTGATGAACTGCTACG
GCGCGGCGACGGAGGTTGCGGCCTCACATGCAGGGGGGAAAGGGAAAAAT
AAAATGAAAAAGAGAAGGCGCACGCATGACGGTAGAAGGGAACGAGGAAC
ATACGACAATGGTTTCTTCGCAGTAGCCTGCGGAGCCGAAGGAGGGGAGG
CCTAGAGGTGTAAAGGGGGCAAAAACGAAATCGTGAGAGCGCAACCTCAC
CCAGAGGGATGGCTGCCTGGTCCAGAGAGGGAAAAGGCCAAAACGCAGTT
TAAGAAAAGAGAACGAAGACATCAACCATGGTCAAATGCTGCGTGGA
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protein sequence of NO26G01020.1

>NO26G01020.1-protein ID=NO26G01020.1-protein|Name=NO26G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=648bp
MAQKDDAQPPTLQGSTTAQQHQQLPHPSCSITTPSGPNPGAHGSRKRQHS
MHRISALGACCLVGLASCYTTAFVLPSGGLSGYSTNRASRHAPHIGSSQH
PPSTRTLLEQQRISSGPSFSLSSTANDNAATNTGPVTVAAAAATAAPNPV
SAMPIKGIPPRGRPGKDGVPLNPPNKGSGKAPLRGDEEVDLARKMQVRVA
YIRVKYLAREALGRDPTHREWADVLGISDKALAEALTAAADAKTTMIRAN
MRLVMSIVRRYLSRGVQLKDLLQEGMNGLTRAAEKFDPDRGFKFSTYATW
WIKQSVMRAVADQSRVVRLPVHVHDLLNQIGRAERELSAQLGRQPTEAEI
AARVDIPQRKLQFLRERTQHTLSMDATRPSGGRKSGSGIGDEVRVSDSIS
DSEPLQDVKADEAYMREQVERLLDSLNPREADVVKMRYGLVDGQQRTLEE
IGVAFRVTRERVRQIEARALHKIKQPYRTQHHKLRDNGRGGGAATAGKGS
SQGHAGSHLSISVFGDFVGAVENGNGLKGGGALVVEEEMVVSVRRSTSST
SRSRSSSSSSSSSSSSDNSGSTSKTPVVASPGTLGGVGSRGRYRKRGVVG
GAGDDEGILVGVGAGRRGRGRGAGAGGLLAKAVPSMSSHNETLVALP*
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Synonyms
Publications