NO20G00140, NO20G00140 (gene) Nannochloropsis oceanica

Overview
NameNO20G00140
Unique NameNO20G00140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1210
Alignment locationchr20:50437..51646 +

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Properties
Property NameValue
DescriptionArsenate reductase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:50437..51646 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036196Ptyr_pPase_sf
IPR023485Ptyr_pPase_SF
Homology
BLAST of NO20G00140 vs. NCBI_GenBank
Match: OYW19796.1 (low molecular weight phosphatase family protein [Sphingobacteriales bacterium 12-47-4])

HSP 1 Score: 134.8 bits (338), Expect = 2.100e-28
Identity = 59/84 (70.24%), Postives = 71/84 (84.52%), Query Frame = 0
Query:   44 QAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAEL 128
            +AIAAM+ +GYDL  HDSKSL+EV+++APFDAVVTMGCGDACPWMPAKRF++W I DPKH+EP EFNK+RD I   V  L+ EL
Sbjct:   46 KAIAAMQELGYDLRTHDSKSLKEVEAYAPFDAVVTMGCGDACPWMPAKRFIDWQIPDPKHLEPAEFNKVRDLIGEKVKALVEEL 129          
BLAST of NO20G00140 vs. NCBI_GenBank
Match: KYP13728.1 (protein tyrosine phosphatase [Flavihumibacter sp. CACIAM 22H1])

HSP 1 Score: 130.2 bits (326), Expect = 5.100e-27
Identity = 60/104 (57.69%), Postives = 75/104 (72.12%), Query Frame = 0
Query:   24 VHEYLSGEETTTHFQPFLVSQAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAEL 128
            V  Y +G + +    P    +AIAAM+ +GYDL+ H SKSL EV+ F PFD VVTMGCGDACPWMPAK FV+W I DPK+MEP +FN++RDYI+  V  LL +L
Sbjct:   32 VEAYSAGSKPSGLVNP----KAIAAMKELGYDLAKHASKSLTEVEQFGPFDVVVTMGCGDACPWMPAKEFVDWQIPDPKYMEPAQFNEVRDYIRDQVKALLTKL 131          
BLAST of NO20G00140 vs. NCBI_GenBank
Match: WP_012913533.1 (arsenate reductase ArsC [Pirellula staleyi] >ADB19274.1 Protein-tyrosine phosphatase, low molecular weight [Pirellula staleyi DSM 6068])

HSP 1 Score: 107.1 bits (266), Expect = 4.700e-20
Identity = 52/105 (49.52%), Postives = 69/105 (65.71%), Query Frame = 0
Query:   24 VHEYLSGEETTTHFQPFLVSQAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAELE 129
            V  Y SG + +    P    +AIAAMR + YDLS H SK L ++    P+DAVVTMGCGD+CP +PAKR  +W I DPKH++P EFN++RD I+  V  L+  L+
Sbjct:   37 VEAYSSGSKPSGKVNP----KAIAAMRELNYDLSKHLSKPLSDLPP-GPYDAVVTMGCGDSCPHIPAKRREDWQIPDPKHLQPAEFNEVRDLIRSKVASLIQSLD 136          
BLAST of NO20G00140 vs. NCBI_GenBank
Match: WP_068188438.1 (arsenate reductase ArsC [Hymenobacter sedentarius] >ALW83735.1 protein tyrosine phosphatase [Hymenobacter sedentarius])

HSP 1 Score: 106.7 bits (265), Expect = 6.100e-20
Identity = 50/83 (60.24%), Postives = 64/83 (77.11%), Query Frame = 0
Query:   44 QAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAE 127
            +AIAAM  +GYDL+AH SKSL+EV+    FD VVTMGCGDACP++ AK  ++W I DPKH+EP EF ++RD I+  V DLLA+
Sbjct:   46 KAIAAMAELGYDLNAHASKSLDEVRD-QEFDYVVTMGCGDACPFIAAKHRLDWQIPDPKHLEPAEFRQVRDLIERQVLDLLAQ 127          
BLAST of NO20G00140 vs. NCBI_GenBank
Match: WP_091245138.1 (arsenate reductase ArsC [Aquimonas voraii] >SDE03110.1 Protein-tyrosine-phosphatase [Aquimonas voraii])

HSP 1 Score: 104.4 bits (259), Expect = 3.000e-19
Identity = 50/104 (48.08%), Postives = 66/104 (63.46%), Query Frame = 0
Query:   24 VHEYLSGEETTTHFQPFLVSQAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAEL 128
            V  Y +G   +    P    +A+  M  + YDLSAH SKSL+E++    FDAV+TMGCGD+CPW+PAKR  +W + DPKHM+ E +  +RD I   V  LLAEL
Sbjct:   34 VEAYSAGSRPSGLINP----KAVRFMAELAYDLSAHGSKSLDEIEGI-DFDAVITMGCGDSCPWVPAKRREDWALPDPKHMDDEAYRAVRDDISARVLRLLAEL 132          
BLAST of NO20G00140 vs. NCBI_GenBank
Match: OGT60754.1 (protein tyrosine phosphatase [Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_63_22])

HSP 1 Score: 104.0 bits (258), Expect = 3.900e-19
Identity = 50/105 (47.62%), Postives = 67/105 (63.81%), Query Frame = 0
Query:   23 AVHEYLSGEETTTHFQPFLVSQAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAEL 128
            AV    +G + +    P    +AI  M  +GYDL+AH SKSL++++    FDAVVTMGCGD+CPW+PAKR  +W + DPKHM+ E +  +RD I   V  LLA L
Sbjct:   29 AVEALSAGSKPSGQINP----KAIRFMGELGYDLNAHSSKSLDDIE--GEFDAVVTMGCGDSCPWVPAKRREDWALPDPKHMDDEAYRGVRDEISARVKSLLASL 127          
BLAST of NO20G00140 vs. NCBI_GenBank
Match: ODU44551.1 (protein tyrosine phosphatase [Xanthomonadaceae bacterium SCN 69-123])

HSP 1 Score: 103.2 bits (256), Expect = 6.700e-19
Identity = 46/84 (54.76%), Postives = 60/84 (71.43%), Query Frame = 0
Query:   44 QAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAEL 128
            +A+  M  +GYDL+AH SKSL+E+     FDAV+TMGCGD+CPW+PAKR  +W + DPKHM+ E +  +RD I   V  LLAEL
Sbjct:   50 KAVRFMAELGYDLAAHGSKSLDEIAGI-DFDAVITMGCGDSCPWVPAKRREDWALPDPKHMDDEAYRAVRDDIAARVRRLLAEL 132          
BLAST of NO20G00140 vs. NCBI_GenBank
Match: PIO47762.1 (low molecular weight phosphatase family protein [Chlorobium sp. 445])

HSP 1 Score: 101.7 bits (252), Expect = 2.000e-18
Identity = 47/86 (54.65%), Postives = 60/86 (69.77%), Query Frame = 0
Query:   44 QAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAELEA 130
            +AI AM+ +GYDL+ H SKSL E+     +D V TMGCGD CP++ AK   +W I DPKHMEPEEF K+RD I+  V D+LA + A
Sbjct:   17 KAIEAMKELGYDLTTHTSKSLNEIPDI-EYDFVATMGCGDECPFVRAKIREDWAIPDPKHMEPEEFRKVRDLIEAKVKDMLARIGA 101          
BLAST of NO20G00140 vs. NCBI_GenBank
Match: WP_022968326.1 (arsenate reductase ArsC [Arenimonas oryziterrae] >KFN43460.1 hypothetical protein N789_09300 [Arenimonas oryziterrae DSM 21050 = YC6267])

HSP 1 Score: 100.5 bits (249), Expect = 4.400e-18
Identity = 44/84 (52.38%), Postives = 60/84 (71.43%), Query Frame = 0
Query:   44 QAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAEL 128
            +AI  M  +GYDL+AH SKSL+E+     FDAV+TMGCGD+CPW+PA+R  +W + DPKHM+  ++ ++RD I   V  LLA L
Sbjct:   51 KAIRFMAEVGYDLAAHASKSLDEID--GEFDAVITMGCGDSCPWVPARRREDWALPDPKHMDDADYRRVRDEISTRVKTLLASL 132          
BLAST of NO20G00140 vs. NCBI_GenBank
Match: WP_056183052.1 (MULTISPECIES: arsenate reductase ArsC [Lysobacter] >KRA14696.1 protein tyrosine phosphatase [Lysobacter sp. Root604] >KRD34438.1 protein tyrosine phosphatase [Lysobacter sp. Root916] >KRD78481.1 protein tyrosine phosphatase [Lysobacter sp. Root983])

HSP 1 Score: 100.5 bits (249), Expect = 4.400e-18
Identity = 48/104 (46.15%), Postives = 65/104 (62.50%), Query Frame = 0
Query:   24 VHEYLSGEETTTHFQPFLVSQAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAEL 128
            V  Y +G   +    P    +A+  M  +GYDLSAH SKSL+E++    FDAVVTMGCGD CPW+PA+R  +W + DPKH++ + +  +RD I   V  LLA L
Sbjct:   36 VDAYSAGSAPSGRINP----KAVRYMAELGYDLSAHASKSLDEIE--GAFDAVVTMGCGDDCPWVPAQRREDWALPDPKHLDDDAYRAVRDEISARVRTLLASL 133          
The following BLAST results are available for this feature:
BLAST of NO20G00140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OYW19796.12.100e-2870.24low molecular weight phosphatase family protein [S... [more]
KYP13728.15.100e-2757.69protein tyrosine phosphatase [Flavihumibacter sp. ... [more]
WP_012913533.14.700e-2049.52arsenate reductase ArsC [Pirellula staleyi] >ADB19... [more]
WP_068188438.16.100e-2060.24arsenate reductase ArsC [Hymenobacter sedentarius]... [more]
WP_091245138.13.000e-1948.08arsenate reductase ArsC [Aquimonas voraii] >SDE031... [more]
OGT60754.13.900e-1947.62protein tyrosine phosphatase [Gammaproteobacteria ... [more]
ODU44551.16.700e-1954.76protein tyrosine phosphatase [Xanthomonadaceae bac... [more]
PIO47762.12.000e-1854.65low molecular weight phosphatase family protein [C... [more]
WP_022968326.14.400e-1852.38arsenate reductase ArsC [Arenimonas oryziterrae] >... [more]
WP_056183052.14.400e-1846.15MULTISPECIES: arsenate reductase ArsC [Lysobacter]... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002538NSK002538Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00140.1NO20G00140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594203gene_6223Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100312g9gene8218Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00140.1NO20G00140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00140 ID=NO20G00140|Name=NO20G00140|organism=Nannochloropsis oceanica|type=gene|length=1210bp
ACAGCCCCTCTCTCCTGGCTCTGCCGACGCCTACCAGCACGAGCAACATG
GCGGACACTGCCAGCCCCGTTCCCTTTAAGCTCCTTTTTGTGTGCGTGGA
AAATTCGAATCGCAGTCAGATGAGCCAAGCTTTTGCCAAGATTCTGGGCG
GGGATAAGGTGGAGTCATACAGCGCAGGTAATTCTTTTTCTGTAGTTTCC
TACAATCCTAAAATTATCGCGTGCAACCTATCCGCAGAAGCCTTCCAAAA
ATAGATTTTTGCATATTCTCCCCTTATTTTGGCCGAGTTTTAAATGGCTT
TGGCAGGTTTTTCACGCATCCTTGTCTCCTCGCACAGGTAGCAAGCCCAG
TGGGATTGTCAACCCCAAGGTACGAAACTAGGAAGAGAGAATGAATGAGG
AAGGGCAGGAGGCAAGGACGTTTAGGTCAAAGGAGAAATAGATTCCTCTA
TCATCCAATTGCTGTCCATGAATATTTATCCGGAGAAGAAACAACAACAC
ACTTTCAACCTTTTCTTGTCTCCCAGGCTATTGCGGCTATGCGGGCGATC
GGGTACGACCTGTCAGCGCACGACTCCAAGAGCCTGGAGGAAGTCAAGAG
CTTTGCCCCCTTTGACGCAGTGGTGACCATGGGCTGTGGTGATGCCTGCC
CTTGGATGCCGGCGAAGCGATTCGTGAACTGGACGATCACTGATCCAAAA
gtacgcggggaaaagaggggagagggaaagagggagggagggagggaagg
agcgagcgagggagcgaggaaaggggtaagacaggctggggttgagatat
aatttttaaatatgaagcatacttgcactttttgcattgtcatgttgtaa
ttggatcacggtagcacaccctctgtgacttttttccctttaatcactag
ctcacttccttccttcctcccttccttcccccacctcaccagCACATGGA
GCCGGAGGAGTTCAACAAGATCCGGGACTACATCAAAGGCCTGGTCACTG
ATCTGTTGGCCGAGCTAGAGGCAGAACGTGCGGGCGGGGCGGCGAGGGAG
GCCAAGGAGTAGGAAAAACAGAAGGGATAGAATGGGGAGGGGGGGAAAGA
GCATGGAATGGAGGGGGAGCAAGAGGAAGGAGAAGTGGTGGATATATTTC
AGTAAATAATCAACCCTGCTTTAGTCAGCCTAATCGACATGAAAATGAAG
ACATAAAACA
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protein sequence of NO20G00140.1

>NO20G00140.1-protein ID=NO20G00140.1-protein|Name=NO20G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MRKGRRQGRLGQRRNRFLYHPIAVHEYLSGEETTTHFQPFLVSQAIAAMR
AIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITD
PKHMEPEEFNKIRDYIKGLVTDLLAELEAERAGGAAREAKE*
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Synonyms
Publications