NO20G00140, NO20G00140 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO20G00140 vs. NCBI_GenBank
Match: OYW19796.1 (low molecular weight phosphatase family protein [Sphingobacteriales bacterium 12-47-4]) HSP 1 Score: 134.8 bits (338), Expect = 2.100e-28 Identity = 59/84 (70.24%), Postives = 71/84 (84.52%), Query Frame = 0 Query: 44 QAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAEL 128 +AIAAM+ +GYDL HDSKSL+EV+++APFDAVVTMGCGDACPWMPAKRF++W I DPKH+EP EFNK+RD I V L+ EL Sbjct: 46 KAIAAMQELGYDLRTHDSKSLKEVEAYAPFDAVVTMGCGDACPWMPAKRFIDWQIPDPKHLEPAEFNKVRDLIGEKVKALVEEL 129
BLAST of NO20G00140 vs. NCBI_GenBank
Match: KYP13728.1 (protein tyrosine phosphatase [Flavihumibacter sp. CACIAM 22H1]) HSP 1 Score: 130.2 bits (326), Expect = 5.100e-27 Identity = 60/104 (57.69%), Postives = 75/104 (72.12%), Query Frame = 0 Query: 24 VHEYLSGEETTTHFQPFLVSQAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAEL 128 V Y +G + + P +AIAAM+ +GYDL+ H SKSL EV+ F PFD VVTMGCGDACPWMPAK FV+W I DPK+MEP +FN++RDYI+ V LL +L Sbjct: 32 VEAYSAGSKPSGLVNP----KAIAAMKELGYDLAKHASKSLTEVEQFGPFDVVVTMGCGDACPWMPAKEFVDWQIPDPKYMEPAQFNEVRDYIRDQVKALLTKL 131
BLAST of NO20G00140 vs. NCBI_GenBank
Match: WP_012913533.1 (arsenate reductase ArsC [Pirellula staleyi] >ADB19274.1 Protein-tyrosine phosphatase, low molecular weight [Pirellula staleyi DSM 6068]) HSP 1 Score: 107.1 bits (266), Expect = 4.700e-20 Identity = 52/105 (49.52%), Postives = 69/105 (65.71%), Query Frame = 0 Query: 24 VHEYLSGEETTTHFQPFLVSQAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAELE 129 V Y SG + + P +AIAAMR + YDLS H SK L ++ P+DAVVTMGCGD+CP +PAKR +W I DPKH++P EFN++RD I+ V L+ L+ Sbjct: 37 VEAYSSGSKPSGKVNP----KAIAAMRELNYDLSKHLSKPLSDLPP-GPYDAVVTMGCGDSCPHIPAKRREDWQIPDPKHLQPAEFNEVRDLIRSKVASLIQSLD 136
BLAST of NO20G00140 vs. NCBI_GenBank
Match: WP_068188438.1 (arsenate reductase ArsC [Hymenobacter sedentarius] >ALW83735.1 protein tyrosine phosphatase [Hymenobacter sedentarius]) HSP 1 Score: 106.7 bits (265), Expect = 6.100e-20 Identity = 50/83 (60.24%), Postives = 64/83 (77.11%), Query Frame = 0 Query: 44 QAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAE 127 +AIAAM +GYDL+AH SKSL+EV+ FD VVTMGCGDACP++ AK ++W I DPKH+EP EF ++RD I+ V DLLA+ Sbjct: 46 KAIAAMAELGYDLNAHASKSLDEVRD-QEFDYVVTMGCGDACPFIAAKHRLDWQIPDPKHLEPAEFRQVRDLIERQVLDLLAQ 127
BLAST of NO20G00140 vs. NCBI_GenBank
Match: WP_091245138.1 (arsenate reductase ArsC [Aquimonas voraii] >SDE03110.1 Protein-tyrosine-phosphatase [Aquimonas voraii]) HSP 1 Score: 104.4 bits (259), Expect = 3.000e-19 Identity = 50/104 (48.08%), Postives = 66/104 (63.46%), Query Frame = 0 Query: 24 VHEYLSGEETTTHFQPFLVSQAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAEL 128 V Y +G + P +A+ M + YDLSAH SKSL+E++ FDAV+TMGCGD+CPW+PAKR +W + DPKHM+ E + +RD I V LLAEL Sbjct: 34 VEAYSAGSRPSGLINP----KAVRFMAELAYDLSAHGSKSLDEIEGI-DFDAVITMGCGDSCPWVPAKRREDWALPDPKHMDDEAYRAVRDDISARVLRLLAEL 132
BLAST of NO20G00140 vs. NCBI_GenBank
Match: OGT60754.1 (protein tyrosine phosphatase [Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_63_22]) HSP 1 Score: 104.0 bits (258), Expect = 3.900e-19 Identity = 50/105 (47.62%), Postives = 67/105 (63.81%), Query Frame = 0 Query: 23 AVHEYLSGEETTTHFQPFLVSQAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAEL 128 AV +G + + P +AI M +GYDL+AH SKSL++++ FDAVVTMGCGD+CPW+PAKR +W + DPKHM+ E + +RD I V LLA L Sbjct: 29 AVEALSAGSKPSGQINP----KAIRFMGELGYDLNAHSSKSLDDIE--GEFDAVVTMGCGDSCPWVPAKRREDWALPDPKHMDDEAYRGVRDEISARVKSLLASL 127
BLAST of NO20G00140 vs. NCBI_GenBank
Match: ODU44551.1 (protein tyrosine phosphatase [Xanthomonadaceae bacterium SCN 69-123]) HSP 1 Score: 103.2 bits (256), Expect = 6.700e-19 Identity = 46/84 (54.76%), Postives = 60/84 (71.43%), Query Frame = 0 Query: 44 QAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAEL 128 +A+ M +GYDL+AH SKSL+E+ FDAV+TMGCGD+CPW+PAKR +W + DPKHM+ E + +RD I V LLAEL Sbjct: 50 KAVRFMAELGYDLAAHGSKSLDEIAGI-DFDAVITMGCGDSCPWVPAKRREDWALPDPKHMDDEAYRAVRDDIAARVRRLLAEL 132
BLAST of NO20G00140 vs. NCBI_GenBank
Match: PIO47762.1 (low molecular weight phosphatase family protein [Chlorobium sp. 445]) HSP 1 Score: 101.7 bits (252), Expect = 2.000e-18 Identity = 47/86 (54.65%), Postives = 60/86 (69.77%), Query Frame = 0 Query: 44 QAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAELEA 130 +AI AM+ +GYDL+ H SKSL E+ +D V TMGCGD CP++ AK +W I DPKHMEPEEF K+RD I+ V D+LA + A Sbjct: 17 KAIEAMKELGYDLTTHTSKSLNEIPDI-EYDFVATMGCGDECPFVRAKIREDWAIPDPKHMEPEEFRKVRDLIEAKVKDMLARIGA 101
BLAST of NO20G00140 vs. NCBI_GenBank
Match: WP_022968326.1 (arsenate reductase ArsC [Arenimonas oryziterrae] >KFN43460.1 hypothetical protein N789_09300 [Arenimonas oryziterrae DSM 21050 = YC6267]) HSP 1 Score: 100.5 bits (249), Expect = 4.400e-18 Identity = 44/84 (52.38%), Postives = 60/84 (71.43%), Query Frame = 0 Query: 44 QAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAEL 128 +AI M +GYDL+AH SKSL+E+ FDAV+TMGCGD+CPW+PA+R +W + DPKHM+ ++ ++RD I V LLA L Sbjct: 51 KAIRFMAEVGYDLAAHASKSLDEID--GEFDAVITMGCGDSCPWVPARRREDWALPDPKHMDDADYRRVRDEISTRVKTLLASL 132
BLAST of NO20G00140 vs. NCBI_GenBank
Match: WP_056183052.1 (MULTISPECIES: arsenate reductase ArsC [Lysobacter] >KRA14696.1 protein tyrosine phosphatase [Lysobacter sp. Root604] >KRD34438.1 protein tyrosine phosphatase [Lysobacter sp. Root916] >KRD78481.1 protein tyrosine phosphatase [Lysobacter sp. Root983]) HSP 1 Score: 100.5 bits (249), Expect = 4.400e-18 Identity = 48/104 (46.15%), Postives = 65/104 (62.50%), Query Frame = 0 Query: 24 VHEYLSGEETTTHFQPFLVSQAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAEL 128 V Y +G + P +A+ M +GYDLSAH SKSL+E++ FDAVVTMGCGD CPW+PA+R +W + DPKH++ + + +RD I V LLA L Sbjct: 36 VDAYSAGSAPSGRINP----KAVRYMAELGYDLSAHASKSLDEIE--GAFDAVVTMGCGDDCPWVPAQRREDWALPDPKHLDDDAYRAVRDEISARVRTLLASL 133 The following BLAST results are available for this feature:
BLAST of NO20G00140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO20G00140 ID=NO20G00140|Name=NO20G00140|organism=Nannochloropsis oceanica|type=gene|length=1210bpback to top protein sequence of NO20G00140.1 >NO20G00140.1-protein ID=NO20G00140.1-protein|Name=NO20G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=142bpback to top Synonyms
Publications
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