NO19G00430, NO19G00430 (gene) Nannochloropsis oceanica

Overview
NameNO19G00430
Unique NameNO19G00430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1839
Alignment locationchr19:165912..167750 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:165912..167750 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR036617BAF_sf
Homology
[Close]
BLAST of NO19G00430 vs. NCBI_GenBank
Match: OQR91302.1 (hypothetical protein THRCLA_22476 [Thraustotheca clavata])

HSP 1 Score: 88.6 bits (218), Expect = 2.300e-14
Identity = 47/120 (39.17%), Postives = 75/120 (62.50%), Query Frame = 0 
Query:    7 FDPAKSQVSHEAQLLWLRSPITGDLTEVPGIGPKHAEHLHAKD-----IHTTHQLIGEYLKMKGKD------VDPKMHAQHFYDHIQAYGVSSHRTDVVDAIASKVSMWLPGMYDASAFH 116
            ++P KS+++ +    +LR+P+TG LTEVPGIGP  A+ L + D     +  T QLIG++L +K  D      +D   H   F+  +++ GV+S+R+ +V AIA KV+  +PG+YDA  F+
Sbjct:    6 YNPEKSRIAEDTLADFLRAPLTGVLTEVPGIGPAAAKKLASGDDIADQVTNTFQLIGKFLMLKRNDDETDEPIDCPTHCDAFWHWLKSKGVTSYRSGIVMAIAEKVNTMVPGVYDACDFN 125
[Close]
BLAST of NO19G00430 vs. NCBI_GenBank
Match: ETI47745.1 (hypothetical protein F443_08032 [Phytophthora parasitica P1569] >ETK87722.1 hypothetical protein L915_07858 [Phytophthora parasitica] >ETL41162.1 hypothetical protein L916_07783 [Phytophthora parasitica] >ETP17595.1 hypothetical protein F441_07998 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 87.0 bits (214), Expect = 6.800e-14
Identity = 48/120 (40.00%), Postives = 73/120 (60.83%), Query Frame = 0 
Query:    7 FDPAKSQVSHEAQLLWLRSPITGDLTEVPGIGPKHAEHL-HAKD----IHTTHQLIGEYLKMKGKD-------VDPKMHAQHFYDHIQAYGVSSHRTDVVDAIASKVSMWLPGMYDASAF 115
            +DP KS+V+ +    +LR+P+TGDLTEVPGIG      L  AKD    +  T QLIG++L +K          +D   H   F+  +++ G++++R+ +V AIA KV+  LPG+YDA+ F
Sbjct:    5 YDPQKSRVAEDTLADFLRAPLTGDLTEVPGIGKAAVAKLSEAKDGEDAVTNTFQLIGKFLMLKANSDDNDDGVIDCAAHCDAFWFWLKSKGITAYRSGIVMAIAEKVNTMLPGIYDAAEF 124
[Close]
BLAST of NO19G00430 vs. NCBI_GenBank
Match: XP_024581212.1 (hypothetical protein L914_07744 [Plasmopara halstedii] >CEG44843.1 hypothetical protein L914_07744 [Plasmopara halstedii])

HSP 1 Score: 86.7 bits (213), Expect = 8.800e-14
Identity = 49/120 (40.83%), Postives = 73/120 (60.83%), Query Frame = 0 
Query:    7 FDPAKSQVSHEAQLLWLRSPITGDLTEVPGIGPKHAEHLHAKD-----IHTTHQLIGEYLKMK------GKDV-DPKMHAQHFYDHIQAYGVSSHRTDVVDAIASKVSMWLPGMYDASAF 115
            +DP KS+V+ +    +LR+P+TGDLTEVPGIG      L   D     +  T QLIG++L +K      G DV D   H   F+  +++ G++++R+ +V AIA KV+  LPG+YDA+ F
Sbjct:    5 YDPQKSRVAEDTLADFLRAPLTGDLTEVPGIGKAAVTKLAGSDDGTEAVTNTFQLIGKFLLLKANSDDDGDDVIDCAAHCDAFWFWLKSKGITAYRSGIVMAIAEKVNTMLPGIYDAADF 124
[Close]
BLAST of NO19G00430 vs. NCBI_GenBank
Match: GBG26084.1 (Hypothetical Protein FCC1311_023042 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 86.7 bits (213), Expect = 8.800e-14
Identity = 41/112 (36.61%), Postives = 69/112 (61.61%), Query Frame = 0 
Query:    7 FDPAKSQVSHEAQLLWLRSPITGDLTEVPGIGPKHAEHLHA-----KDIHTTHQLIGEYLKMKGKDVDPKMHAQHFYDHIQAYGVSSHRTDVVDAIASKVSMWLPGMYDASA 114
            FDP+KS V  +A   +L +PI+ DL +VPGIGP   + L       + + TT+QL+G++L ++   +  + H    +  + A G+SSHR  +V +IA K ++ +PG+YD++A
Sbjct:    4 FDPSKSMVKEDALAAFLAAPISEDLEQVPGIGPAAKKALAVPLKGDQAVTTTYQLVGKFLTLRAAGMTQQEHLDAMWHWLNARGISSHRAGIVHSIAEKCNLMIPGIYDSAA 115
[Close]
BLAST of NO19G00430 vs. NCBI_GenBank
Match: XP_009521736.1 (hypothetical protein PHYSODRAFT_354157 [Phytophthora sojae] >EGZ26448.1 hypothetical protein PHYSODRAFT_354157 [Phytophthora sojae])

HSP 1 Score: 86.3 bits (212), Expect = 1.200e-13
Identity = 47/120 (39.17%), Postives = 73/120 (60.83%), Query Frame = 0 
Query:    7 FDPAKSQVSHEAQLLWLRSPITGDLTEVPGIGPKHAEHL-HAKD----IHTTHQLIGEYLKMKGKD-------VDPKMHAQHFYDHIQAYGVSSHRTDVVDAIASKVSMWLPGMYDASAF 115
            +DP KS+V+ +    +LR+P+TGDLTEVPGIG      L  AKD    +  T QLIG++L +K          ++   H   F+  +++ G++++R+ +V AIA KV+  LPG+YDA+ F
Sbjct:    5 YDPQKSRVAEDTLADFLRAPLTGDLTEVPGIGKAAVTKLGEAKDGEEAVENTFQLIGKFLMLKANSDDNDDGVINCAQHCDAFWFWLKSKGITAYRSGIVMAIAEKVNTMLPGIYDAAEF 124
[Close]
BLAST of NO19G00430 vs. NCBI_GenBank
Match: XP_008904770.1 (hypothetical protein PPTG_11245 [Phytophthora parasitica INRA-310] >ETM47535.1 hypothetical protein L914_07744 [Phytophthora parasitica] >ETN09624.1 hypothetical protein PPTG_11245 [Phytophthora parasitica INRA-310] >ETO76511.1 hypothetical protein F444_08071 [Phytophthora parasitica P1976] >ETP45626.1 hypothetical protein F442_07965 [Phytophthora parasitica P10297] >KUF77763.1 hypothetical protein AM587_10009771 [Phytophthora nicotianae])

HSP 1 Score: 85.5 bits (210), Expect = 2.000e-13
Identity = 47/120 (39.17%), Postives = 73/120 (60.83%), Query Frame = 0 
Query:    7 FDPAKSQVSHEAQLLWLRSPITGDLTEVPGIGPKHAEHL-HAKD----IHTTHQLIGEYLKMKGKD-------VDPKMHAQHFYDHIQAYGVSSHRTDVVDAIASKVSMWLPGMYDASAF 115
            +DP KS+V+ +    +LR+P+TGDLTEVPGIG      L  A+D    +  T QLIG++L +K          +D   H   F+  +++ G++++R+ +V AIA KV+  LPG+YDA+ F
Sbjct:    5 YDPQKSRVAEDTLADFLRAPLTGDLTEVPGIGKAAVAKLSEAEDGEDAVTNTFQLIGKFLMLKANSDDNDDGVIDCAAHCDAFWFWLKSKGITAYRSGIVMAIAEKVNTMLPGIYDAAEF 124
[Close]
BLAST of NO19G00430 vs. NCBI_GenBank
Match: XP_002895757.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY54721.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 85.5 bits (210), Expect = 2.000e-13
Identity = 47/120 (39.17%), Postives = 73/120 (60.83%), Query Frame = 0 
Query:    7 FDPAKSQVSHEAQLLWLRSPITGDLTEVPGIGPKHAEHL-HAKD----IHTTHQLIGEYLKMKGKD-------VDPKMHAQHFYDHIQAYGVSSHRTDVVDAIASKVSMWLPGMYDASAF 115
            +DP KS+V+ +    +LR+P+TGDLTEVPGIG      L  A+D    +  T QLIG++L +K          +D   H   F+  +++ G++++R+ +V AIA KV+  LPG+YDA+ F
Sbjct:    5 YDPQKSRVAEDTLADFLRAPLTGDLTEVPGIGKAAVAKLGEAEDGEDAVTNTFQLIGKFLMLKANSDDNDDGVIDCAAHCDAFWFWLKSKGITAYRSGIVMAIAEKVNTMLPGIYDAAEF 124
[Close]
BLAST of NO19G00430 vs. NCBI_GenBank
Match: POM77871.1 (hypothetical protein PHPALM_4680 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 85.5 bits (210), Expect = 2.000e-13
Identity = 47/120 (39.17%), Postives = 73/120 (60.83%), Query Frame = 0 
Query:    7 FDPAKSQVSHEAQLLWLRSPITGDLTEVPGIGPKHAEHL-HAKD----IHTTHQLIGEYLKMKGKD-------VDPKMHAQHFYDHIQAYGVSSHRTDVVDAIASKVSMWLPGMYDASAF 115
            +DP KS+V+ +    +LR+P+TGDLTEVPGIG      L  A+D    +  T QLIG++L +K          +D   H   F+  +++ G++++R+ +V AIA KV+  LPG+YDA+ F
Sbjct:    5 YDPQKSRVAEDTLADFLRAPLTGDLTEVPGIGKAAVTKLGEAEDGEDAVTNTFQLIGKFLMLKANSDDTDDEVIDCAAHCDAFWFWLKSKGITAYRSGIVMAIAEKVNTMLPGIYDAAEF 124
[Close]
BLAST of NO19G00430 vs. NCBI_GenBank
Match: ETL94304.1 (hypothetical protein L917_07672 [Phytophthora parasitica])

HSP 1 Score: 85.1 bits (209), Expect = 2.600e-13
Identity = 46/120 (38.33%), Postives = 73/120 (60.83%), Query Frame = 0 
Query:    7 FDPAKSQVSHEAQLLWLRSPITGDLTEVPGIGPKHAEHL-HAKD----IHTTHQLIGEYLKMKGKD-------VDPKMHAQHFYDHIQAYGVSSHRTDVVDAIASKVSMWLPGMYDASAF 115
            +DP KS+V+ +    +LR+P+TGDLTEVPGIG      L  A+D    +  T QL+G++L +K          +D   H   F+  +++ G++++R+ +V AIA KV+  LPG+YDA+ F
Sbjct:    5 YDPQKSRVAEDTLADFLRAPLTGDLTEVPGIGKAAVAKLSEAEDGEDAVTNTFQLVGKFLMLKANSDDNDDGVIDCAAHCDAFWFWLKSKGITAYRSGIVMAIAEKVNTMLPGIYDAAEF 124
[Close]
BLAST of NO19G00430 vs. NCBI_GenBank
Match: GAY01425.1 (Hypothetical protein PINS_009245 [Pythium insidiosum])

HSP 1 Score: 85.1 bits (209), Expect = 2.600e-13
Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = 0 
Query:    7 FDPAKSQVSHEAQLLWLRSPITGDLTEVPGIGPKHAEHLHAKD----IHTTHQLIGEYLKMKGKD-------VDPKMHAQHFYDHIQAYGVSSHRTDVVDAIASKVSMWLPGMYDASAF 115
            +DP KS+V+ +    +LR+P+TGDLTEVPGIG      L A +    +  T QLIG++L +K          +D   H   F+  +++ G+ ++R+ +V AIA KV+  LPG+YDA+ F
Sbjct:    5 YDPQKSRVAEDTLADFLRAPLTGDLTEVPGIGKAAVGKLAAGEEGDRVENTFQLIGKFLMLKQSTDKNEDGLIDCAEHCDAFWYWLKSKGIQAYRSGIVMAIAEKVNTMLPGIYDAAEF 123
The following BLAST results are available for this feature:
BLAST of NO19G00430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OQR91302.12.300e-1439.17hypothetical protein THRCLA_22476 [Thraustotheca c... [more]
ETI47745.16.800e-1440.00hypothetical protein F443_08032 [Phytophthora para... [more]
XP_024581212.18.800e-1440.83hypothetical protein L914_07744 [Plasmopara halste... [more]
GBG26084.18.800e-1436.61Hypothetical Protein FCC1311_023042 [Aurantiochytr... [more]
XP_009521736.11.200e-1339.17hypothetical protein PHYSODRAFT_354157 [Phytophtho... [more]
XP_008904770.12.000e-1339.17hypothetical protein PPTG_11245 [Phytophthora para... [more]
XP_002895757.12.000e-1339.17conserved hypothetical protein [Phytophthora infes... [more]
POM77871.12.000e-1339.17hypothetical protein PHPALM_4680 [Phytophthora pal... [more]
ETL94304.12.600e-1338.33hypothetical protein L917_07672 [Phytophthora para... [more]
GAY01425.12.600e-1338.66Hypothetical protein PINS_009245 [Pythium insidios... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR055ncniR055Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G00430.1NO19G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|276675gene_9743Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G00430.1NO19G00430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G00430 ID=NO19G00430|Name=NO19G00430|organism=Nannochloropsis oceanica|type=gene|length=1839bp
ACAGCCACTACCGCTACCACCACTTCTCCACCAACAACAATGACGgtacg
taccgtgctcccttgtgtgtgcgtcaatacgtgcccgtctcgttcttttc
ctcttcccatccgcttccatttcccaaccaccaaacccgtctcttttatc
ttcatctctcttgcacagAAGCATGGCACCTTCGACCCTGCCAAATCCCA
GGTCTCCCACGAGGCCCAGCTCCTGTGgtaggtacatgcatggcccgtcc
acctgcttatttgctgtctgcgtgcgtggagcgctgggttgacgtatcgt
ggcctttctcttccctctccatgcttttcttccttccaactttcttccct
tccgctgccctcgtcccctcctccccccctactctctgtccttctctcgc
ctaacgtccttctctccctcttgtgcatcgttatcttcgctgtcttattt
ctcttctgtgtgtctattccacacatccgtccaaccacatggcaccattt
acagGCTCCGGTCACCCATCACGGGAGATCTGACCGAGGTGCCCGGCATC
Ggtacgtccctcttctcctccctccctccatccttccttccctttctcgt
tccctccctccctcgttctatctcatttcaccttcccaccttccttcctc
ttcctacctccctttccacctcttcatttctcctgccagGCCCCAAACAT
GCCGAGCATCTGCACGCTAAGGATATTCACACCACCCATCAGCTCATCGG
CGAGgtaccctccctccctccctccctccctccctccctccctgccttgc
tcctttgctcatttctcttctcatgacatcaagaattgctaaccctcctg
tccctctctcccttcctcagTACCTCAAGATGAAGGGCAAGGACGTCGAT
CCCAAGgtcaacaaatatctcacaggagggggggaaggagggagggaggg
agggagggagagaggggcatgaaagcacatgaaggcctcccaccccggca
tctcgcccctccctccctcccgccttccttcctccctcagATGCATGCGC
AGCATTTCTATGATCATATTCAGGCGTACGGAGTCAGCTCTCACCGTACG
GACGTGGTGGATGCCATCGCGTCGAAGgtcaggagggggaggaagggagg
gggaagaaggagaaggagaaggagaaagggactatggggttttcttcaca
gcccgaaccactccctccctcccccctcccccctgccctccctcagGTCT
CCATGTGGCTGCCCGGCATGTATGATGCTTCTGCCTTTCATCACACCGCT
GGCCCCACCACGGAGGGAAAGAACGAGCATGAGCTTATTGCTGTTGCTGC
CACTGATACTACAGCTGCTACTGCTGCTGCTGCTGCTGCTGTTGCTGTTG
CTGCTGTTGCTGCTGTTGCTGCTGCTGCTGTTCCTACCTCGGAGGAGGAG
GGCGGAAAAAAGGAGGTGGAGGGGGCGACAGCTGTGGAAATGGCGCCTGA
AGCATCACCCGTGGAAACGAATTAGAGATAACGGACGAAAGAAGGAGGTG
AGGAGGTGAGGGCAGGTAAGGCAAGGAGGGAGGGAGGGAGGGAGGGGGGA
AGGATCCGTTGACATGCGTCTATTTTTTCCTCTGCCTCTCTCTCTCTGTC
TCTCTCTCTTCTTTCTCTCTGCCCCCCTCTCTCTTTCCCCGAACTTCCTC
TTTTTGGGCCGTCTTAGTCTGTTGTTTCTATTTCGTTGTCGAAGAGAGGG
AGGCAGGGAGGGAAGGAGGGAGAGAAGGGGGGAGTCTACAAAGGACCTGT
CAGCTCAACTCCAAAATTTTCTCCTGCCGCTTCCTCTTC
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protein sequence of NO19G00430.1

>NO19G00430.1-protein ID=NO19G00430.1-protein|Name=NO19G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MTKHGTFDPAKSQVSHEAQLLWLRSPITGDLTEVPGIGPKHAEHLHAKDI
HTTHQLIGEYLKMKGKDVDPKMHAQHFYDHIQAYGVSSHRTDVVDAIASK
VSMWLPGMYDASAFHHTAGPTTEGKNEHELIAVAATDTTAATAAAAAAVA
VAAVAAVAAAAVPTSEEEGGKKEVEGATAVEMAPEASPVETN*
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Synonyms
Publications