NO15G00890, NO15G00890 (gene) Nannochloropsis oceanica

Overview
NameNO15G00890
Unique NameNO15G00890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2995
Alignment locationchr15:272932..275926 +

Link to JBrowse

Properties
Property NameValue
DescriptionRibosomal rna large subunit methyltransferase h
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr15genomechr15:272932..275926 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO:0016740transferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR029028Alpha/beta_knot_MTases
IPR003742SPOUT_MeTrfase
Homology
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BLAST of NO15G00890 vs. NCBI_GenBank
Match: XP_005852783.1 (ribosomal rna large subunit methyltransferase h [Nannochloropsis gaditana CCMP526] >EKU23052.1 ribosomal rna large subunit methyltransferase h [Nannochloropsis gaditana CCMP526] >EWM22458.1 ribosomal rna large subunit methyltransferase h [Nannochloropsis gaditana])

HSP 1 Score: 165.2 bits (417), Expect = 2.100e-37
Identity = 91/145 (62.76%), Postives = 105/145 (72.41%), Query Frame = 0 
Query:   65 VRPWRALPLLIFRLVLLSTLQPTMSFIAFQTQRLASTLRICSTTATTTIYPTRAFRATPTCGLQINIHIRGKRTGGEEYLNDAYLEYTKRLRPVLELETIWHKTDEELKAAVAKEKAPVICLDERGKQLPSLELADVLYKRLEEG 210
            +R W A  +L F    L+ +Q  M F AF      S  R C     +  + T AFR TP CGLQ+ IHIRGKR+GGEE+LNDAYLEYTKRLRPVL L T+WHKTD EL+AA+AKEKAPVICLDE GKQL S+ELAD+LYKRLEEG
Sbjct:   21 IRFWTAFSVLFF----LNFVQSNM-FFAF------SHTRYCRRLVRSPTF-THAFRVTPACGLQVTIHIRGKRSGGEEFLNDAYLEYTKRLRPVLGLTTVWHKTDSELEAAIAKEKAPVICLDEGGKQLSSMELADILYKRLEEG 153
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BLAST of NO15G00890 vs. NCBI_GenBank
Match: CBJ28859.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 79.7 bits (195), Expect = 1.200e-11
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 0 
Query:  147 AYLEYTKRLRPVLELETIWHKTDEELKAAVAKEKAPVICLDERGKQLPSLELADVLYKRLEEG 210
            AY EY KRLRPVL L+T WHKTD++L+AAV K+   V+CLDE G+Q+ S   +D L+ +LEEG
Sbjct:   63 AYDEYAKRLRPVLALDTQWHKTDDDLEAAVRKDPGVVVCLDEGGRQMNSPAFSDFLFSKLEEG 125
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BLAST of NO15G00890 vs. NCBI_GenBank
Match: OLP85879.1 (Ribosomal RNA large subunit methyltransferase H [Symbiodinium microadriaticum])

HSP 1 Score: 66.6 bits (161), Expect = 1.000e-7
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 0 
Query:  128 QINIHIRGKRTGGEEYLNDAYLEYTKRLR---PVLELETIWHKTDEELKAAVAKEKAPVICLDERGKQLPSLELADVLYKRLEEG 210
            ++ +H+ GK   G  +   A  EY +RLR   P +E+ETI+HK D +L  A+ K + P++ LDERG  L S E A +L+ RLEEG
Sbjct:  997 KVTVHVVGKPVSG-GWEGTAVEEYVQRLRGRDPAIEVETIFHKADAQLLRALKKLRHPILVLDERGALLDSEEFARLLFARLEEG 1080
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BLAST of NO15G00890 vs. NCBI_GenBank
Match: XP_002179243.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC49066.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 65.1 bits (157), Expect = 3.000e-7
Identity = 37/97 (38.14%), Postives = 54/97 (55.67%), Query Frame = 0 
Query:  118 AFRATPTC-GLQINIHIRGKRTGGEEYLNDAYLEYTKRLRPV-LELETIWHKTDEELKAAVAKE---KAPVICLDERGKQLPSLELADVLYKRLEEG 210
            A  +T  C GL+  I I G+++G E +L DA   Y  RL+P  ++++T WHK D+ L   V  +     PV+ LD RGK+  S +  D  YK +E G
Sbjct:   36 ASSSTTRCMGLKTTIRIVGRKSGSESWLEDACSMYETRLKPANIDVQTEWHKNDQSLTKGVQSDYVRNVPVVMLDPRGKRFTSEQFTDDFYKWMEIG 132
The following BLAST results are available for this feature:
BLAST of NO15G00890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
XP_005852783.12.100e-3762.76ribosomal rna large subunit methyltransferase h [N... [more]
CBJ28859.11.200e-1158.73conserved unknown protein [Ectocarpus siliculosus][more]
OLP85879.11.000e-743.53Ribosomal RNA large subunit methyltransferase H [S... [more]
XP_002179243.13.000e-738.14predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL148nonsL148Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL145nonsL145Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR006ncniR006Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR063ngnoR063Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK001518NSK001518Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO15G00890.1NO15G00890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO15G00890.2NO15G00890.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO15G00890.3NO15G00890.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587286gene_4635Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100011g12gene7942Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO15G00890.1NO15G00890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO15G00890.2NO15G00890.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO15G00890.3NO15G00890.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO15G00890 ID=NO15G00890|Name=NO15G00890|organism=Nannochloropsis oceanica|type=gene|length=2995bp
GTCGTTGTCCTCCTCATCTTCTTTCCTTCGCATTCACCCATTCCTCATCA
TATTCCTCCTTCATTTTTAAAATTCTTCACAAATACCACGACTTCTCCCA
CCATTCCCTCTCACTCATTTGAAACCACACCCTCTTCGCTTTTCCTGCCA
TGCACTCTTTTCTTCTAATTAATCTGACAACTCCTTCTTGCAATCATTCT
TCTTCTTATTCATCATCATGCCGAGACTTTTGACGATGGCGACGACTCCG
TCTCAGCGGCCCCCGCCCTCTCCTCCTTTCCCTCCCCCTCCTCCTCCTTC
CTATTCTTCTCCACCAACTCCTCCTGCTCCTCCCTCTCTAGCCCCTCCAA
AAAGGAAACCAAGGACTGTGTGCTCGAAGCCAAGCCCGTCACTTCAGCTG
CCTTAGAGGAAGCCGACGAGGTCAAGGACAGGAGCGACGATCGTTCCTCC
CCTGCCAGCGGCCCAACATACTCATAGATTGTTACGAACACGGACTGGGT
CGCAGGGTCCCTTATCTTCTCGATCCATATGACGCCGTCCATGTAGCTGA
CATCTGCGAAGGCAGTGCCTAGATTTCCCACATTTTGAGGGAGGGGGAGC
TTCCATTGTTTGCCTGCCTTGGAGAAGGGGCTGTTGATGTTGACGTAGTT
GGAAGTGAATTCGAAAACCAGGCGGCCTTGTGGCGTCAGGTTGTATTTTG
CGGAGGATACGAGAGACTCCCAGTACTTGTCTTTAAACTTCATGACATTC
TCGAGGCGGTCGTCGCGGTGGATATCATAATACACACGAGTGCCGGGGGG
GAGGATTTTATACCTCTCTTCCGTGGTGAATGCCAACTTCCATCTTCCCT
TCATCGCCTCAGCCAAGCCTTCCAAAGTACGAACAGGGGAGCCGTTCTTG
ATCAAGGTATCGGCGTACCCAATCATCATATCCCGGGTCTCGGGGGCGAG
CATCCCGGCGTTGACATCTTTTTCTTCCATGAATTTGAGGCAGCACAAAA
GCTCTTGCCATTCAAAGAGGACTTCGTCGGGCGGTCGATACATCTCACGG
TCCCATCCTTTGGGTATGTACTTGGTCTGAGAACGTTGTAGTGGGCTGGA
GGGGGGAGGGGTGGGCGTGGAGGTGGCGTATCTGAATAGGCTGCTGCGGG
TTGAGGAGGATAATGAGGAAGAGGAGGATGGTCTGCTGATGACGAGGGCA
TGCGGGATGAAGGCGCTTGCAATCGGAGCGCATAGGCCCAGGGCAGCCGT
GACAACACCAGCAGCCGTCCCTGCTAGTAGCATAGCAGTACCTCTTATTC
TTCTTGGTGGTGGTGCCATGGCCTACGTACTGGAGTGCTAGTTGCTGTGT
GTGTCATGTTGGGAAGGAAGAGGGGAGGTCGATCAGTGTTGAGAAGTTGA
ATAACTGAGCAAAGCAAAACCACAGACTACAACAGCACAAGTGTGGTGTA
ATCTACCCGTACTTCTGATACTACTTGTGCGTGCCTGGGTGTGTCATGGT
CAACTGCATTGCGAGAAATATCTAGATGGAATCAGGTTTTCTTCAAGAAA
GTTGCTTCAACCCACCACAGTTCTTCACTTCTCTAACAAACCTTACCACT
GTGTCCACACGCACCGACAGGCATATACAAGGGCAACGAAGTTTATATCA
AGGAGCGACCGCAGCATGCGCGAAGCTGGGACACGATTTCTGTAAAGGGT
TCTGGCGGATGGGAGACGTGCGGCCGTGGAGgtacgccaaaaaaaaagac
cctcgggctccatctttaagaatcgtttatgcaatttgtgctctttcgaa
atccatattcgacagaccctcacaatgatttagctcaacgcttcctctcc
gccctcgtgtcctcaatcccaaaccccaaaccccatcccttctgtcccca
cccgtaccagGGCACTTCCTCTTCTGATTTTTCGCCTCGTACTCTTGAGC
ACGTTGCAGCCGACCATGTCTTTCATAGCTTTCCAAACCCAGCGCCTCGC
CTCCACCCTGCGCATCTGTTCTACAACAGCCACCACCACCATTTACCCCA
CACGCGCCTTTCGGGCCACCCCGACCTGCGGCCTCCAAATCAACATTCAC
ATACGGGGCAAGCGCACGGGCGGCGAAGAATACCTCAACGACGCTTACCT
TGAGTACACAAAGCGCCTGAGACCTGTTTTAGAACTCGAGACCATATGGC
ACAAGACAGATGAGGAGCTAAAGGCTGCCGTAGCCAAGGAGAAAGCACCT
GTTATTTGTCTCGATGAACGGGGGAAACAGCTACCGTCATTAGAGTTAGC
GGACGTGCTTTATAAGCGATTGGAAGAGGGTAAGTGAAAGACAGGCAAAA
AGAGTTTTGGTGTAATATCAAAAAATTGTGACATAGGTCATTGGAAGCAT
TCATGGCTTTCCTTTCATTGTCTTTATGCGACTCCTGGCCGTTTTCTCGC
TTTATCTTCGTCTAGAGCCGCCAAGCATTGTGCCATGTCCGCCCTACACA
TTTCAGCTCCTTTCCCCTACCCCTCCCTTCAGGTGGTTCTCGGCTAGTGT
TTGTGATCGGGGGCGCCGAGGGCCTGCCCTCCGCCTTGAAAAACAAGGAG
CTTTGGAGTTTGTCCAAGTTGACCTTCACACATCAGTGGGCTCGTGTTTT
GCTGACAGAGCAGATATATCGAGCGACGGAGATAAAGAAGGGAAGTGGAT
ATCATAAGGAGTAGTGAGAGCTTCGTTGTGGGAGAGGGAATCCCCCATTC
TAGGTGTGCTTATTCAGGGTTCACATTTATTTTGTTCGTAAGTGAGCTGG
GAAGAGGGGATGAAAGCTCAGGGAAAGTGTGAATTCTTATGGATCTTAAA
CATAATGAAGGGAAATTCAAATGAAGAAAAGCAATGAGTCACGGATATGA
AGATCCGGGTACATGCTTATCTTGGATAGAAACACACAGGGAAGTGCGAG
GAAAGGAAGTGGAAGAGGACGTTGGAACTCGCGTGGATAGTTCTG
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protein sequence of NO15G00890.1

>NO15G00890.1-protein ID=NO15G00890.1-protein|Name=NO15G00890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MESGFLQESCFNPPQFFTSLTNLTTVSTRTDRHIQGQRSLYQGATAACAK
LGHDFCKGFWRMGDVRPWRALPLLIFRLVLLSTLQPTMSFIAFQTQRLAS
TLRICSTTATTTIYPTRAFRATPTCGLQINIHIRGKRTGGEEYLNDAYLE
YTKRLRPVLELETIWHKTDEELKAAVAKEKAPVICLDERGKQLPSLELAD
VLYKRLEEAPFPYPSLQVVLG*
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protein sequence of NO15G00890.2

>NO15G00890.2-protein ID=NO15G00890.2-protein|Name=NO15G00890.2|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MESGFLQESCFNPPQFFTSLTNLTTVSTRTDRHIQGQRSLYQGATAACAK
LGHDFCKGFWRMGDVRPWRALPLLIFRLVLLSTLQPTMSFIAFQTQRLAS
TLRICSTTATTTIYPTRAFRATPTCGLQINIHIRGKRTGGEEYLNDAYLE
YTKRLRPVLELETIWHKTDEELKAAVAKEKAPVICLDERGKQLPSLELAD
VLYKRLEEGGSRLVFVIGGAEGLPSALKNKELWSLSKLTFTHQWARVLLT
EQIYRATEIKKGSGYHKE*
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protein sequence of NO15G00890.3

>NO15G00890.3-protein ID=NO15G00890.3-protein|Name=NO15G00890.3|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MESGFLQESCFNPPQFFTSLTNLTTVSTRTDRHIQGQRSLYQGATAACAK
LGHDFCKGFWRMGDVRPWRALPLLIFRLVLLSTLQPTMSFIAFQTQRLAS
TLRICSTTATTTIYPTRAFRATPTCGLQINIHIRGKRTGGEEYLNDAYLE
YTKRLRPVLELETIWHKTDEELKAAVAKEKAPVICLDERGKQLPSLELAD
VLYKRLEEGK*
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Synonyms
Publications