NO14G00500, NO14G00500 (gene) Nannochloropsis oceanica

Overview
NameNO14G00500
Unique NameNO14G00500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4802
Alignment locationchr14:193475..198276 +

Link to JBrowse

Properties
Property NameValue
Descriptionpoly(A) binding protein 8
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:193475..198276 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
BLAST of NO14G00500 vs. NCBI_GenBank
Match: ETL85526.1 (hypothetical protein, variant 2 [Phytophthora parasitica])

HSP 1 Score: 224.2 bits (570), Expect = 8.000e-55
Identity = 146/354 (41.24%), Postives = 178/354 (50.28%), Query Frame = 0
Query:   81 RVYVGNLSWNVDREQLRAHMAEVGETSYCEVLTEPSGRSKGCGIVEYNSPEEAAAAIERLHNTTLNGRPIFVREDRESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAGPFPPTAGAGXXXXXXXXXXXXXXGVRVYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHDGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDREDKKVGGPVGGGFHANMGQGAXXXXXXXXXXXXXXXRQLYVGNLDFEITWQGLKDHFKGF-DVQRAEVAYDADGRSRGFGTVRFGTVAEAQRAQDSLNGTTLNNRTIEVREDNR 434
            RVYVGNLSW++  + L+ HM   G      VL E +GRSKGCGIV Y + E A  AI  L++T L GR IFVREDRE+                                                                PT+                 G RVYVGNLS+ V WQ+LKDHM+K G VVHADVLE  +GRSKGCG+VEY     A +AI ELNNT+L+GRLIFVREDRE      P GG       + A               RQLYVGNL ++  WQ LKD F+   DV+RA++A   DGRSRGFG +R+   ++A +A + LNG  +  R IEVR D R
Sbjct:   44 RVYVGNLSWSIKWQDLKDHMQAAGPVELATVL-EWNGRSKGCGIVTYATEEAAQNAIATLNDTELGGRKIFVREDREA---------------------------------------------------------------QPTS-----------TTKPKRGFRVYVGNLSWNVKWQELKDHMKKAGTVVHADVLELANGRSKGCGLVEYATEEEAAKAIAELNNTELEGRLIFVREDRE------PEGGSISKFAKRAA-------APRGSGEGRQLYVGNLPWDTNWQQLKDLFRTVGDVERADIAEYPDGRSRGFGIIRYTNASDAWQAIERLNGLEIEGRLIEVRLDKR 309          
BLAST of NO14G00500 vs. NCBI_GenBank
Match: ETL85527.1 (hypothetical protein, variant 3 [Phytophthora parasitica])

HSP 1 Score: 224.2 bits (570), Expect = 8.000e-55
Identity = 146/354 (41.24%), Postives = 178/354 (50.28%), Query Frame = 0
Query:   81 RVYVGNLSWNVDREQLRAHMAEVGETSYCEVLTEPSGRSKGCGIVEYNSPEEAAAAIERLHNTTLNGRPIFVREDRESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAGPFPPTAGAGXXXXXXXXXXXXXXGVRVYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHDGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDREDKKVGGPVGGGFHANMGQGAXXXXXXXXXXXXXXXRQLYVGNLDFEITWQGLKDHFKGF-DVQRAEVAYDADGRSRGFGTVRFGTVAEAQRAQDSLNGTTLNNRTIEVREDNR 434
            RVYVGNLSW++  + L+ HM   G      VL E +GRSKGCGIV Y + E A  AI  L++T L GR IFVREDRE+                                                                PT+                 G RVYVGNLS+ V WQ+LKDHM+K G VVHADVLE  +GRSKGCG+VEY     A +AI ELNNT+L+GRLIFVREDRE      P GG       + A               RQLYVGNL ++  WQ LKD F+   DV+RA++A   DGRSRGFG +R+   ++A +A + LNG  +  R IEVR D R
Sbjct:   44 RVYVGNLSWSIKWQDLKDHMQAAGPVELATVL-EWNGRSKGCGIVTYATEEAAQNAIATLNDTELGGRKIFVREDREA---------------------------------------------------------------QPTS-----------TTKPKRGFRVYVGNLSWNVKWQELKDHMKKAGTVVHADVLELANGRSKGCGLVEYATEEEAAKAIAELNNTELEGRLIFVREDRE------PEGGSISKFAKRAA-------APRGSGEGRQLYVGNLPWDTNWQQLKDLFRTVGDVERADIAEYPDGRSRGFGIIRYTNASDAWQAIERLNGLEIEGRLIEVRLDKR 309          
BLAST of NO14G00500 vs. NCBI_GenBank
Match: XP_024573880.1 (rna-binding protein [Plasmopara halstedii] >CEG37511.1 rna-binding protein [Plasmopara halstedii])

HSP 1 Score: 224.2 bits (570), Expect = 8.000e-55
Identity = 145/354 (40.96%), Postives = 175/354 (49.44%), Query Frame = 0
Query:   81 RVYVGNLSWNVDREQLRAHMAEVGETSYCEVLTEPSGRSKGCGIVEYNSPEEAAAAIERLHNTTLNGRPIFVREDRESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAGPFPPTAGAGXXXXXXXXXXXXXXGVRVYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHDGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDREDKKVGGPVGGGFHANMGQGAXXXXXXXXXXXXXXXRQLYVGNLDFEITWQGLKDHFKGF-DVQRAEVAYDADGRSRGFGTVRFGTVAEAQRAQDSLNGTTLNNRTIEVREDNR 434
            RVYVGNLSW++  + L+ HM   G      VL E +GRSKGCGI+ Y + E A  AI  L++T L GR IFVREDRES                                                                    AG              G RVYVGNLS+ V WQ+LKDHM+K G VVHADVLE  +GRSKGCG+VEY  P  A  AI ELNNT+L GRLIFVREDRE      P GG                         RQLYVGNL ++  WQ LKD F+   +V+RA++A   DGRSRGFG +R+ T A+A +A + +NG  +  R IEVR D +
Sbjct:   75 RVYVGNLSWSIKSQDLKEHMQVAGPVETATVL-EWNGRSKGCGIITYATEEAAQEAISTLNDTELGGRKIFVREDRESQF----------------------------------------------------------------VAAG----------KPKRGFRVYVGNLSWTVKWQELKDHMKKAGTVVHADVLELANGRSKGCGLVEYSTPEEAATAIAELNNTELDGRLIFVREDRE------PEGGSI------SKFAKRSNAPSRGNGEGRQLYVGNLPWDTNWQQLKDLFRTVGEVERADIAEYPDGRSRGFGIIRYTTAADAWQAIERMNGMEVEGRQIEVRLDKK 341          
BLAST of NO14G00500 vs. NCBI_GenBank
Match: OQR95163.1 (RNA binding protein [Thraustotheca clavata])

HSP 1 Score: 213.0 bits (541), Expect = 1.800e-51
Identity = 145/380 (38.16%), Postives = 178/380 (46.84%), Query Frame = 0
Query:   69 EPQKLDPARQ--AQRVYVGNLSWNVDREQLRAHMAEVGETSYCEVLTEPSGRSKGCGIVEYNSPEEAAAAIERLHNTTLNGRPIFVREDRESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAGPFPPTAGAGXXXXXXXXXXXXXXGVRVYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHDGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDREDK---KVGGPVGGGFHANMGQGAXXXXXXXXXXXXXXXRQ-----------LYVGNLDFEITWQGLKDHFK-GFDVQRAEVAYDADGRSRGFGTVRFGTVAEAQRAQDSLNGTTLNNRTIEVRED 432
            EP +  PA +   +RVYVGNL+W+V    L  HM   GE   CEVLTEPSGRSKGCG+V + + + A  AIERL +T L GR IFVREDRE                                                            + PF P + A               G RVYVGNLS+ V WQDLKDHM++ GNV+HADVLE+ +GRSKGCGIVEYD P  A RAI  L ++ L  R IFVREDRE +   +   P         G G+                Q           +Y+GNL  E  WQ +KD  +    V   EVA   DGRS+G+  V+  T  +AQ A   L+ T    R +EVR D
Sbjct:   38 EPYRGPPAARDVGRRVYVGNLAWDVKSTNLMDHMRLAGEVEQCEVLTEPSGRSKGCGLVTFRTHDMAMNAIERLTDTELMGRKIFVREDREENNQKPPRSLPPQSSSYMASSVYVSPPTSGY-----------------------------SNPFTPVSVAN-----------LNGGTRVYVGNLSWSVKWQDLKDHMKQAGNVLHADVLEEPNGRSKGCGIVEYDTPEAAARAIMMLTDSKLDNRPIFVREDREARPRHQNAPPASMPPLLRGGSGSAPPVFSRPPTLHSAPSQVHTMPGPPLCSIYIGNLPPEAMWQDVKDLVRTAASVDHVEVALHPDGRSKGYALVKCQTPQDAQNAIGQLHDTEFRGRYLEVRLD 377          
BLAST of NO14G00500 vs. NCBI_GenBank
Match: GAX14247.1 (hypothetical protein FisN_1Hh441 [Fistulifera solaris])

HSP 1 Score: 212.2 bits (539), Expect = 3.200e-51
Identity = 166/443 (37.47%), Postives = 221/443 (49.89%), Query Frame = 0
Query:    6 EVIRADVLLDATGRSKGCGLVEFKTPAQARQAIATLNNTDLDGRQIFLREDREAGAAMGPAG----EEPQKLDPARQAQRVYVGNLSWNVDREQLRAHMAEVGETSYCEVLTEPSG-RSKGCGIVEYNSPEEAAAAIERLHNTTLNGRPIFVREDRESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAGPFPPTAGAGXXXXXXXXXXXXXXGVRVYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHDGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDREDKKVGGPVGGGFHANMGQGAXXXXXXXXXXXXXXXR---------QLYVGNLDFEITWQGLKDHFKGF-DVQRAEVAYDADGRSRGFGTVRFGTVAEAQRAQDSLNGTTLNNRTIEVREDNR 434
            +  R DV++   GRSKGC +VEF T   AR+A+ TLN+++L+GRQIF+REDRE     GP G          D   +++RVYVGNL+W+V+ + L+    + G+  + E++ E  G RSKGCGIVE+ + E A  AIE L +T   GR +FVREDRE+                                                          G+  F P                      V+V NL+ +  W  LKD+MR+ GNV  A +  +  G + G GIV Y  P  A RAIRELN+++L G  I VREDR   K+ G  GGG     G+  XXXXXXXXXXXXXXX          +L+VGNL FE +W  +KDHFK   ++  AEV        RG+G V+F    +A++A    NGT    R +EVR D R
Sbjct:   82 DATRVDVMMAPDGRSKGCAIVEFATADDARKAVLTLNDSELEGRQIFVREDREDRLG-GPGGSFTSSRAFSSDHNAKSRRVYVGNLAWDVEWQDLKDFCKQAGDVVHAEIIKESGGIRSKGCGIVEFATVEGAQQAIEMLTDTDFRGRMVFVREDRETSNQNG-----------------------------------------------------GSASFAPNTS-------------------VFVKNLNPDTTWFQLKDYMRRAGNVDSATIHANASGEA-GSGIVTYQRPQDASRAIRELNDSELMGYQISVREDRSHSKLHGR-GGGXXXXXGRXXXXXXXXXXXXXXXXXXXXXDTTDGIKLFVGNLPFETSWSEVKDHFKQCGEIIHAEV-------KRGYGIVQFRKRMDAEKAIAEFNGTDFQGRNLEVRFDQR 442          
BLAST of NO14G00500 vs. NCBI_GenBank
Match: OWZ13208.1 (RNA binding protein [Phytophthora megakarya])

HSP 1 Score: 211.8 bits (538), Expect = 4.100e-51
Identity = 147/402 (36.57%), Postives = 181/402 (45.02%), Query Frame = 0
Query:   61 AAMGPAGEEPQKLDPARQAQRVYVGNLSWNVDREQLRAHMAEVGETSYCEVLTEPSGRSKGCGIVEYNSPEEAAAAIERLHNTTLNGRPIFVREDRESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAGPFPPTAGAGXXXXXXXXXXXXXXGVRVYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHDGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDRED---------KKVGGPVGGGFHANMGQGAXXXXXXXXXXXXXXXRQLYVGNLDFEITWQ--------------------GLKDHFKGFDVQRAEVAYDADGRSRGFGTVRFGTVAEAQRAQDSLNGTTLNNRTIEVREDNR 434
            A  G  G+  + ++      RVYVGNLSW++  + L+ HM   G      VL E +GRSKGCG+V Y + E A  AI  L++T L GR IFVREDRE+                                                           A P                      G RVYVGNLS+ V WQ+LKDHM+K G VVHADVLE+ +GRSKGCG+VEY     A +AI ELNNT+L+GRLIFVREDRE          K+   P GGG                        RQLYVGNL +E  WQ                             DV+RA++A   DGRSRGFG +R+   A+A +A + LNG  +  R IEVR D R
Sbjct:   48 ARHGRHGDGDEDMEQMPVGCRVYVGNLSWSIKWQDLKDHMQAAGSVELATVL-EWNGRSKGCGVVTYATEEAAQNAIATLNDTELGGRKIFVREDREAQASST------------------------------------------------------AKP--------------------KRGFRVYVGNLSWNVKWQELKDHMKKAGTVVHADVLEESNGRSKGCGLVEYATQEEAAKAIAELNNTELEGRLIFVREDREPEGGSISKFAKRAAAPRGGG----------------------ESRQLYVGNLPWETNWQQRXXXXXXXXXXXXXXXXXXXXXXXXXXXDVERADIAEYPDGRSRGFGIIRYTNAADAWQAIERLNGLEIEGRLIEVRLDKR 352          
BLAST of NO14G00500 vs. NCBI_GenBank
Match: XP_005787823.1 (RNA-binding protein [Emiliania huxleyi CCMP1516] >EOD35394.1 RNA-binding protein [Emiliania huxleyi CCMP1516])

HSP 1 Score: 209.5 bits (532), Expect = 2.000e-50
Identity = 152/353 (43.06%), Postives = 183/353 (51.84%), Query Frame = 0
Query:   82 VYVGNLSWNVDREQLRAHMAEVGETSYCEVLTE-PSGRSKGCGIVEYNSPEEAAAAIERLHNTTLNGRPIFVREDRESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAGPFPPTAGAGXXXXXXXXXXXXXXGVRVYVGNLSYEVAWQDLKDHMRKVGNVVHADV-LEDHDGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDREDKKVGGPVGGGFHANMGQGAXXXXXXXXXXXXXXXRQLYVGNLDFEITWQGLKDHFK-GFDVQRAEVAYDADGRSRGFGTVRFGTVAEAQRAQDSLNGTTLNNRTIEVRED 432
            VYVGNL++ V  + L+ H  + G+  + +VL E  +GRSKGCGIV + +P +A  AIE LH+T L GRPIFVREDRE+                                                             P   + G G              G  VYVGNL+YEV+WQDLKDH ++VG+VV ADV LE+  GRSKGCGIV + +P  A  AI  L++TDLKGR IFVREDRE                    XXXXXXXXXXXX    Q+YVGNL ++  WQ LKDHFK   DV RAEV   ADGRSRGFGTV F +  +A RA    N +    R I VR D
Sbjct:   64 VYVGNLAYEVSWQDLKDHCKQAGDVRHADVLLENGTGRSKGCGIVVFGTPRDAQNAIEMLHDTELKGRPIFVREDREA-----------------------------------------------------------GAPQSSSRGGG-----------TAPGCSVYVGNLAYEVSWQDLKDHCKQVGDVVRADVLLENGTGRSKGCGIVVFGSPKDAKTAIDTLHDTDLKGRAIFVREDREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC--QVYVGNLSWDCKWQDLKDHFKQAGDVIRAEVKDGADGRSRGFGTVLFSSAMDAARAIQKFNESNFMGRPILVRPD 344          
BLAST of NO14G00500 vs. NCBI_GenBank
Match: PRW60040.1 (RNA binding isoform B [Chlorella sorokiniana] >PRW60042.1 RNA binding isoform C [Chlorella sorokiniana])

HSP 1 Score: 206.5 bits (524), Expect = 1.700e-49
Identity = 168/361 (46.54%), Postives = 202/361 (55.96%), Query Frame = 0
Query:   77 RQAQRVYVGNLSWNVDREQLRAHMAEVGETSYCEVLTE--PSGRSKGCGIVEYNSPEEAAAAIERLHNTTLNGRPIFVREDRESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAGPFPPTAGAGXXXXXXXXXXXXXXGVRVYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHDGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDREDKKVGGPVGGGFHANMGQGAXXXXXXXXXXXXXXXRQLYVGNLDFEITWQGLKDHFK-GFDVQRAEVAYDADGRSRGFGTVRFGTVAEAQRAQDSLNGTTLNNRTIEVREDNRV 435
            R A+R++VGNLSW    + L+ H   VG   + +VL E  P  RSKGCGIVEY +P+EAAAAI  LH++ L GR I+VREDRE          XXXXXXXXXXXXXXXXXXXXXXXX                            P     G                G RVYVGNLS+E  WQ+LKDH +  G V HADVL D +GRS+GCGIVE+D+P  A+ AI  L+N+ L GR I VREDRED            A+     XXXXXXXXXXX     Q+ V  L F+ +WQ LKD  +    V  A++A   DGRS+G+GTV F T ++A  A D LNG  L  RT+    D  V
Sbjct:   10 RVARRIFVGNLSWQTSWQDLKDHFGTVGRVVFADVLREDGPGSRSKGCGIVEYETPDEAAAAILELHDSELGGRKIWVREDREDFELRGEGGPXXXXXXXXXXXXXXXXXXXXXXXXR------------------------SRSPLHRGGGGFRGDFGGRREPAATVGRRVYVGNLSFETTWQELKDHFKAAGRVAHADVLTDAEGRSRGCGIVEFDHPADALHAISMLSNSTLGGRQIHVREDREDPA----------AHXXXXXXXXXXXXXXXXGAPGTQVVVHGLPFKFSWQDLKDLARPAGAVVHADIAMGGDGRSKGWGTVAFATPSDANAAVDMLNGKELEGRTLACHMDKFV 336          
BLAST of NO14G00500 vs. NCBI_GenBank
Match: PRW60041.1 (RNA binding isoform A [Chlorella sorokiniana])

HSP 1 Score: 206.5 bits (524), Expect = 1.700e-49
Identity = 168/361 (46.54%), Postives = 202/361 (55.96%), Query Frame = 0
Query:   77 RQAQRVYVGNLSWNVDREQLRAHMAEVGETSYCEVLTE--PSGRSKGCGIVEYNSPEEAAAAIERLHNTTLNGRPIFVREDRESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAGPFPPTAGAGXXXXXXXXXXXXXXGVRVYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHDGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDREDKKVGGPVGGGFHANMGQGAXXXXXXXXXXXXXXXRQLYVGNLDFEITWQGLKDHFK-GFDVQRAEVAYDADGRSRGFGTVRFGTVAEAQRAQDSLNGTTLNNRTIEVREDNRV 435
            R A+R++VGNLSW    + L+ H   VG   + +VL E  P  RSKGCGIVEY +P+EAAAAI  LH++ L GR I+VREDRE          XXXXXXXXXXXXXXXXXXXXXXXX                            P     G                G RVYVGNLS+E  WQ+LKDH +  G V HADVL D +GRS+GCGIVE+D+P  A+ AI  L+N+ L GR I VREDRED            A+     XXXXXXXXXXX     Q+ V  L F+ +WQ LKD  +    V  A++A   DGRS+G+GTV F T ++A  A D LNG  L  RT+    D  V
Sbjct:   10 RVARRIFVGNLSWQTSWQDLKDHFGTVGRVVFADVLREDGPGSRSKGCGIVEYETPDEAAAAILELHDSELGGRKIWVREDREDFELRGEGGPXXXXXXXXXXXXXXXXXXXXXXXXR------------------------SRSPLHRGGGGFRGDFGGRREPAATVGRRVYVGNLSFETTWQELKDHFKAAGRVAHADVLTDAEGRSRGCGIVEFDHPADALHAISMLSNSTLGGRQIHVREDREDPA----------AHXXXXXXXXXXXXXXXXGAPGTQVVVHGLPFKFSWQDLKDLARPAGAVVHADIAMGGDGRSKGWGTVAFATPSDANAAVDMLNGKELEGRTLACHMDKFV 336          
BLAST of NO14G00500 vs. NCBI_GenBank
Match: XP_002905565.1 (RNA binding protein, putative [Phytophthora infestans T30-4] >EEY68406.1 RNA binding protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 206.1 bits (523), Expect = 2.300e-49
Identity = 135/333 (40.54%), Postives = 163/333 (48.95%), Query Frame = 0
Query:   81 RVYVGNLSWNVDREQLRAHMAEVGETSYCEVLTEPSGRSKGCGIVEYNSPEEAAAAIERLHNTTLNGRPIFVREDRESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAGPFPPTAGAGXXXXXXXXXXXXXXGVRVYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHDGRSKGCGIVEYDNPHGAMRAIRELNNTDLKGRLIFVREDREDKKVGGPVGGGFHANMGQGAXXXXXXXXXXXXXXXRQLYVGNLDFEITWQGLKDHFKGF-DVQRAEVAYDADGRSRGFGTVRFGTVAEAQRA 413
            RVYVGNLSW++  + L+ HM   G      VL E +GRSKGCGIV Y + E A  AI  L++T L GR IFVREDRE+                                                                PTA                 G RVYVGNLS+ V WQ+LKDHM+  G VVHADVLE  +GRSKGCG+VEY     A +AI ELNNT+L+GRLIFVREDRE      P GG         +               RQLYVGNL ++  WQ LKD F+   DV+RA++A   DGRSRGFG +R+    +A +A
Sbjct:   75 RVYVGNLSWSIKGQDLKDHMQAAGPVDLATVL-EWNGRSKGCGIVTYATEEAAQNAIATLNDTELGGRKIFVREDREA---------------------------------------------------------------QPTA-----------TTKPKRGYRVYVGNLSWNVKWQELKDHMKTAGTVVHADVLELANGRSKGCGLVEYATEDEAAKAIAELNNTELEGRLIFVREDRE------PEGGSI-------SKFAKRASAPRGNGEGRQLYVGNLPWDTNWQQLKDLFRTVGDVERADIAEYPDGRSRGFGIIRYTNAVDALQA 319          
The following BLAST results are available for this feature:
BLAST of NO14G00500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
ETL85526.18.000e-5541.24hypothetical protein, variant 2 [Phytophthora para... [more]
ETL85527.18.000e-5541.24hypothetical protein, variant 3 [Phytophthora para... [more]
XP_024573880.18.000e-5540.96rna-binding protein [Plasmopara halstedii] >CEG375... [more]
OQR95163.11.800e-5138.16RNA binding protein [Thraustotheca clavata][more]
GAX14247.13.200e-5137.47hypothetical protein FisN_1Hh441 [Fistulifera sola... [more]
OWZ13208.14.100e-5136.57RNA binding protein [Phytophthora megakarya][more]
XP_005787823.12.000e-5043.06RNA-binding protein [Emiliania huxleyi CCMP1516] >... [more]
PRW60040.11.700e-4946.54RNA binding isoform B [Chlorella sorokiniana] >PRW... [more]
PRW60041.11.700e-4946.54RNA binding isoform A [Chlorella sorokiniana][more]
XP_002905565.12.300e-4940.54RNA binding protein, putative [Phytophthora infest... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL138nonsL138Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR069ncniR069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR023ngnoR023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002244NSK002244Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO14G00500.1NO14G00500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO14G00500.2NO14G00500.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|646884gene_5615Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO14G00500.1NO14G00500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO14G00500.2NO14G00500.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO14G00500 ID=NO14G00500|Name=NO14G00500|organism=Nannochloropsis oceanica|type=gene|length=4802bp
ACAGGACGTTCCAAGCAGTTGGGAGGAGCCGGTAGATTTATTCTGAACTT
TGTTGTCTTAAAGGCGGCGAAGGAGAAAGAATAAAGGAAGGAAAAAAAGG
CAGCAGCAGAACAGCAGCAGCCCCACCACACACCACCTCTTTACCAGCTA
CACAAGTAGATGGCATCGTTGCTTCAAGGAACAGAAGACGCTCTTGATAT
GCCCATCGAAAGCATGATTGgtacgtacgggcgaagaagggaaaggaggg
aagggaggggagttaataagaacagggattctcctcccttcatttcagga
ggagggctacgtaaactccgccactttgtggaaatgagatggatgcgaca
tgtcacccgagtgggaagcgtctatttaaaggcgtctgtctagaggtgat
ttacaaggattggctgggggacagaatattgcggtggggaacagcggcgt
gctgggcaggcgtcggagttatagggtcagccttcttgttgtcaaataca
tcccccccactcactcactcacccgcccaactcgtcctccctccatccac
agAAGACAACAATGAAGCTGGCACCGCCGAGGGGGCCGCGCCCGTGAATC
CGAACAACCGTCGAGTATACGTGGGGAACTTGTCCTGGAGTACGGCGTGG
CAGGGGCTCAAGGACCACATGAAGACCGTCGGAGAGGgtgaggagatggg
aagggaagggaagggaagggaagggaagggaagagaaggcatggaaagag
gaggtggatagagggaaggataaggagatgagaagggaaggaaagggggt
gggggagagataggcgtagggatagaggggagggtgtcgtcctgacaagc
gcagttccgaggtagaaagaaagtcttattcctccctccctcccgcccgc
cccctttccttgcttccttcagTCATCCGCGCTGACGTCCTTCTGGATGC
GACGGGTCGCTCCAAGGGCTGTGGGTTGGTTGAATTTAAGACTCCCGCCC
AGGCTCGTCAGGCCATCGCCACCCTTAACAACACGGACCTTGATGgtacg
tacccctccctccctccctccctccctcccttcctttcttcgtcttatta
ccccatcgctctttcccatctcaccctcctgccctccttccctccctccc
tccctccccccttcccagGCCGTCAGATCTTCCTTCGGGAGGATCGCGAG
GCCGGTGCTGCCATGGGACCGGCAGGGGAGGAGCCGCAGAAGCTGGATCC
TGCCCGTCAAGCACAGCGTGTCTATGTAGGGAACTTGTCGTGGAATGTGG
ACCGGGAACAGCTCCGTGCCCACATGGCGGAAGTGGGGGAGAgtgagtaa
gggagggagggagggagggagggagggatggatggaaggagggtatgggg
ataaatgttagtgagcatgcatgaaatcataccattttcgttttctggat
cgtcggggaaagaaagaacctttctattcatttccttccctccctccctc
cctccctccccccctccctcagCGTCGTACTGCGAGGTGCTGACGGAGCC
CTCGGGGCGGTCCAAGGGCTGTGGCATTGTGGAGTACAACTCCCCGGAGG
AGgtgagggagggagggagggagagagggagggagggaggggaaaacatg
ggccgtcttacatgaactgaactgtcataatccattgacacaatccctca
cacctacctccctccctccctccctccctccctccctccttctcttagGC
GGCAGCTGCCATCGAGCGTCTGCACAACACCACCCTCAACGGCCGGCCCA
TTTTTGTCCGGGAGGACCGAGAGAGCGGCGCCGCGGGCGAGGGAGGAGGA
GGAGGACGAGGCGGGGGTGGGGGGCACCAGCACATGTACCAGCAGCACCA
CCACCACCAGgtgagcctttttttccttcctccctccctccctccctccc
tccctccctccctccctttcctcgttcctcgggtcccgcccgctcgtcaa
aaaaaaaaaaaaaaaagccgtccagaaaggaaacccaccctccctccctc
cctccctccctccctccttccttccctccccatcaccagCAGCAGCAAGT
GGTGTATCATCCTCACGCGGGCCATCATGTCGTCCATCACCCCGTGGTGC
ACCATCACGCCCCTCCTCCGCAATATCCCGGCGCGGGGCCCTTCCCCCCC
ACGGCGGGCGCGGGAGGTCGCGGCGGAGGGCGGGGCGGAGGAGCCCCGGG
AGGGGTGGGTGTGCGTGTGTATGTCGGCAACCTGTCGTATGAGGTGGCGT
GGCAAGACCTCAAGGACCACATGCGCAAGgtagggaggaagagagggagc
gagggaggcagcgaaggaggcagggagcgagggaggtagcgagggaggta
gcgtgggaaggaagagggaaggaagagggaggagggagggagggagaggg
aggacaagcaagggcctatggaaagtctgccaggtactcttgactcacct
ccttccctccctccctccctccctccctccctcccttgtccagGTGGGGA
ACGTGGTGCACGCGGACGTGTTGGAGGACCATGACGGACGGTCCAAAGGC
TGTGGCATTGTCGAGTACGACAACCCCCATGGCGCCATGCGGGCCATTCG
GGAGgtagggagggagggaggtagggagggagggagggagggagatccag
aaacaaagatacgccagcacattagaaccccacactcacgaggacctctc
ccttcctttctttccttcctgcttcccttcccttccttcctttcctccct
cctttcctccgtcccttccctcttcagTTGAACAATACGGACCTCAAAGG
CCGGCTCATCTTTGTGCGCGAGGACCGGGAAGACAAGAAGgtaagcccct
ccctccctcccccctccctccctccctccgcacccacccgcctaaccctt
cctcaccccctcctaccctccctccctgctccagGTCGGCGGCCCCGTCG
GCGGCGGCTTCCACGCCAATATGGGCCAGGGGGCGGCCATGCGAGGAGGA
GGGGGAGGAGGGCCTCCGTCCGCGGCGGGAAGGCAGCTCTATGTCGGAAA
CCTGGACTTTGAGgtgaggaggagggaggaaagaggggagggtaagggta
gttgaggggaggagggatggtgagagtgtctaatgcttgtctgaggctgc
tcccgtcgatccagacgtccttctgacggccttccctccctccctccctc
gttccctccctccctttgtctgtagATCACCTGGCAGGGCCTTAAAGACC
ACTTCAAGGGCTTTGACGTCCAGCGTGCTGAGGTAGCCTATGATGCCGAC
GGCCGCTCCCGGGGCTTTGGAACGgtacgcccccccccaccttcccttct
tccctccctccctccctcccttctcccttctgcacacgctcatctgccct
ccctctctccctctgtccctccttccttccctccccatcagGTCCGCTTT
GGAACGGTGGCTGAGGCTCAACGGGCGCAGGACTCTCTTAATGGCACCAC
CCTCAACAACCGCACCATCGAGGTGAGGGAGGACAACCGAGTGGTTTAAG
ATTTGCAGGAGGCACGAGAGGAGGAGGAGGAGAAAGAGGGGGGGGGGAAG
AGGACGGGTTTTATTACATCATGGTATCAGTCAATTCATGCGTGGGGTTC
GTAAGTGATGGAGGAGGAGGGTGAAGCGAAGGAGAGAGAAGTAAGGATCT
AGCGACGCCGGTCCCTCTCTTTTCCCCTCTTGTTTCAGTCTCCCTTTATC
CTGTAAACATGCCAGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGAGCACATCAAGAGGAGGGAGAGGAGGAAGGATGG
TCGGTAAAAGAGATATCGTCCCGACAGAACTAGTGAAGAAGAAAGACAGG
AGCACCACCACCACCAAGACCACCACCATGAGCAAGAGCCAGCAGGCATA
ATCAATTAATTTAGGAACAGAATGATTTGAAGATACCGCATTTGAGTACG
TAAGAGAGAGAGAGAGAGGAAGAGGGCAGAGGAGGTCGAAAGAGATAGAG
AGGGAAAGAGATCGACATTAAGATGAACAGGGGGATGGAGGAGGGAATGA
GGAGGAGAGGAGAAGAATGAGAAGGAAGGAGAGGAAAAGGTTGAGGAGGC
GGAGGAGGAGGAGGAGGAGACATAAGAGAGAAGAGAGACAAAATGAGTGA
CGGGAAGGTAAAAAAGATGGGACGGAGAGAAGAGGGGAAGCGTAGGGAGA
AACACAGCGTCGAGAAAAGGAAGGGGGTAATCCAGCAAGGAAGAGAGATC
TCCCTTGTTTTCCTTCCTTCTCATAAGCCTTTCTTCCCATTACATCACTC
GTCCGTCTTCCACTCACGGCTCTTCACGACAAGCCATACATCCGATAATA
CTCCCTTGATAAGAATAGCCACCCCCCCCGTTCCCTGTTTCACCCCCCCA
TTCCTCACCACCAATTAATCAACCCTTTTTGATTTATGTCTATGTGTGTG
TGCGTGTGAGTGTGTGTCTTGAGAGAGACAAAAGCGAGCGACAAGTAGAG
AGAGTGAGAGCAGGAGAAAGAGAAGTTGGGAATTGTCACCATAATTTCTC
TCGTGTCCTGCACGTACGGTTTGGATTTTCGGTTCAGTTGCAATAGATGG
GGCAGGGGCAAATAACAAGACAAGGAGGGATGAGGGAGAAGGTAGAAAAA
AAGAAAAAATGGAAAGTAAGAGCCTCAAGAAGACACAGATTGATGTATTC
GC
back to top

protein sequence of NO14G00500.1

>NO14G00500.1-protein ID=NO14G00500.1-protein|Name=NO14G00500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MASLLQGTEDALDMPIESMIEDNNEAGTAEGAAPVNPNNRRVYVGNLSWS
TAWQGLKDHMKTVGEVIRADVLLDATGRSKGCGLVEFKTPAQARQAIATL
NNTDLDGRQIFLREDREAGAAMGPAGEEPQKLDPARQAQRVYVGNLSWNV
DREQLRAHMAEVGETSYCEVLTEPSGRSKGCGIVEYNSPEEAAAAIERLH
NTTLNGRPIFVREDRESGAAGEGGGGGRGGGGGHQHMYQQHHHHQQQQVV
YHPHAGHHVVHHPVVHHHAPPPQYPGAGPFPPTAGAGGRGGGRGGGAPGG
VGVRVYVGNLSYEVAWQDLKDHMRKVGNVVHADVLEDHDGRSKGCGIVEY
DNPHGAMRAIRELNNTDLKGRLIFVREDREDKKVGGPVGGGFHANMGQGA
AMRGGGGGGPPSAAGRQLYVGNLDFEITWQGLKDHFKGFDVQRAEVAYDA
DGRSRGFGTVRFGTVAEAQRAQDSLNGTTLNNRTIEVREDNRVV*
back to top

protein sequence of NO14G00500.2

>NO14G00500.2-protein ID=NO14G00500.2-protein|Name=NO14G00500.2|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MKTVGEVIRADVLLDATGRSKGCGLVEFKTPAQARQAIATLNNTDLDGRQ
IFLREDREAGAAMGPAGEEPQKLDPARQAQRVYVGNLSWNVDREQLRAHM
AEVGETSYCEVLTEPSGRSKGCGIVEYNSPEEAAAAIERLHNTTLNGRPI
FVREDRESGAAGEGGGGGRGGGGGHQHMYQQHHHHQQQQVVYHPHAGHHV
VHHPVVHHHAPPPQYPGAGPFPPTAGAGGRGGGRGGGAPGGVGVRVYVGN
LSYEVAWQDLKDHMRKVGNVVHADVLEDHDGRSKGCGIVEYDNPHGAMRA
IRELNNTDLKGRLIFVREDREDKKVGGPVGGGFHANMGQGAAMRGGGGGG
PPSAAGRQLYVGNLDFEITWQGLKDHFKGFDVQRAEVAYDADGRSRGFGT
VRFGTVAEAQRAQDSLNGTTLNNRTIEVREDNRVV*
back to top
Synonyms
Publications